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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005448 ID=TCONS_00005448|Name=TCONS_00005448|organism=Clytia hemisphaerica|type=transcript|length=7354bpRun BLAST on NCBI transcript from alignment at sc0000053:789687..836117+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005448 ID=TCONS_00005448|Name=TCONS_00005448|organism=Clytia hemisphaerica|type=transcript|length=46431bp|location=Sequence derived from alignment at sc0000053:789687..836117+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005448 vs. Swiss-Prot (Human)
Match: SORL (Sortilin-related receptor OS=Homo sapiens GN=SORL1 PE=1 SV=2) HSP 1 Score: 731.865 bits (1888), Expect = 0.000e+0 Identity = 521/1438 (36.23%), Postives = 749/1438 (52.09%), Query Frame = 2
Query: 449 GDPAMDEIGKRFRRAVKNDLEKIKS-SPYAFNDKHFIAEVHWSGANSSSIMVLMRDPDNLMSSSRP--SNFYVSRDYGKTYTNVTG--NFTLSDGSLATISSFFSSKADNRKYILVAKYHRVLFVSDDECKTFRRVSTTFYPSEVKYHPRYSYYVALHEKEMGSKRLYTSTNNGRYWRFKASDVESYTWSYYPPVDTTSYLYYFKHTAGQGVLLKTRAWSYFYSR----TLAQGVEDFLMINQYMFXXXX-----XXXXXXXXLLVSTNRNGFESTNFPFTNSTSMLSLNFLVADASENETFVAVAFNNKTANLYISDFEGKKYSLALENVLYFNKQDKGVNRFFRH----DFVELHRVLGVSGVYIATNLTQGKPGTRHLQSWITFNKGGDWSHIVPPPELCTDSKKTGSL---CALQLSQEFG-FHNPYTRFTPIYSKKSAPGFILATGNVGPYLNSTPNVFLSTDAGISWRKILDGHYYYAFVDHGGIIVGAQKYGYTDTLKFSWDEGHSWQDYKFSKDPVRVYGLLTEPGEKSAIFTVYAS-KANGHSWFVIQVDFRQFLGRPCDKSKDYYLWELGDLRNDTQHCSLGKKQKYERRLADHKCYNGYNYDRAVEVSNCLCTREDFMCDFGFKEFVLGWFGTFCFPDINFFNATIKQPSWCQPGLLYNISSGYRKIPGDTCEGGDFDKKFLPETRACHIDPIDDFVLYAKSSYIMRYDLKSHQSVRMHLNGMKNVISLDYDYAGKTLFYADITLDRIMRMNLTTGHLHEVLQFDEERTYVEGIAYDWMNKDIYYTDVGSAEIGIISVDGRFKKKLFGPSDVGKPRGIAVHPAKGVMAWTDLGS-NPSITIANMDGSGKKNLLSTSQNIKTPNDVAFDYESNLLYWTDSGMDRIERIQLDGRGRKVIQSSGVSNPYSLDIYKQKIVWDDWSYGGVQLMDKESGDGKQNLVNWLYKPTALRAFWEGKQKLDNNPCAPGHHNCTFKCLP-ANGKPSCVCPEGLKPV---SGPLQCKCPNEEVFDRKTNACRPPKNETCTAHQFTCTHSKECIPDHWXXXXXXXXXXXSDEWGCAAPEVCKVN-QFRCA-NGACILRSWKCDNEEDCSDGSDEKNCTTAGCAVGHVKCPTSECIPNNWVCDGEDDCADGWDEKDCSQTTTVRPTVVCPATQFGCIKYNRYRCLSNSFKXXXXXXXXXXSDER--GCAKVICSALERNCDNGLQCIARRYWCNGWPDCNDGSDENNCAFTTPPRPTSPEICSGNGTYPCDNRRRCYGPEQRCNGIPDCNDGADEKGCXXXXXXXXXXXGKCK--GYQCKKSVNCIGYHQTCDGRTDCPHGDDEWPASCA-------CT----FRCPDNNACATR--CNGIPECKGKEDEAKC-DTEKGKVDCALPS---PFSKKC-DGSCFNITVMCDDQALCDDASDEPA 4606
G DE R +R+ E IK + ND H VHW+G S+ I+ L RD ++ +RP S+ YVS DYGK++ ++ NF L + S A I+ F+ S ADN++YI Y + L+++ D C T + S F +++ H + S + ++ +K+L+ S + G+ W V+S++W P D + +Y +H G R+ +F SR + + V DF + ++YMF TK + + L VS R + F + + + +ADASE++ FV V+ +N NLYIS+ EG K+SL+LENVLY++ G + R+ F + HRV G+ GVYIAT L G +++S ITF+KGG W + P K L C+L L+Q N R PI SK+SAPG I+ATG+VG L S NV++S+ AG WR+ L G +YY + DHGGII + T+ LK+S +EG +W+ + FS+ PV VYGLLTEPGEKS +FT++ S K N HSW ++QV+ LG PC ++ DY LW D R + C LG K ++RR C+NG ++DR V VSNC CTRED+ CDFGFK C PD F + P C G Y + GYRKI GDTC GGD + + E C + ++F+LYA I RYDL S + ++ L G++ ++LD+DY L+++D+ LD I R+ L EV+ + VE +A++ +++ +Y+ D G +I + + DG F+ + S + +PR + + P +GVM WTD G P I +NMDGS +L+ S+++K PN ++ D +YWTD+ ++ IERI G+ R VI + + +PY++ ++K +I WDDWS + K SG + L N L ++ F++GK +N C P C+ CLP AN SC CPE + SG L C CP + + K N C +N TC +Q+ C++ CI W CD D DCGD SDE C +C ++ QFRC +G CI S+KCD E+DC D SDE +C C C + CI ++WVCDG++DC D DE +C T + T C A+ F C C+ + C+GD DC DGSDE C K C+ C NG CI C+G DC+DGSDE +C +C+ + C NR++C C+GI C DG+DE + P C G+QC+ V CI CDG DC DE A+C C+ FRC + + R C+ +C DE C D+ PS P +C G+C T +CD C D SDE A
Sbjct: 68 GASRADEKPLRRKRSAALQPEPIKVYGQVSLNDSHNQMVVHWAGEKSNVIVALARDS---LALARPKSSDVYVSYDYGKSFKKISDKLNFGLGNRSEAVIAQFYHSPADNKRYIFADAYAQYLWITFDFCNTLQGFSIPFRAADLLLHSKASNLLLGFDRSHPNKQLWKSDDFGQTWIMIQEHVKSFSWGI-DPYDKPNTIYIERHEPS-GYSTVFRSTDFFQSRENQEVILEEVRDFQLRDKYMFATKVVHLLGSEQQSSVQLWVSFGRKPMRAAQFVTRHPIN----EYYIADASEDQVFVCVSHSNNRTNLYISEAEGLKFSLSLENVLYYSPGGAGSDTLVRYFANEPFADFHRVEGLQGVYIAT-LINGSMNEENMRSVITFDKGGTWEFLQAPAFTGYGEKINCELSQGCSLHLAQRLSQLLNLQLRRMPILSKESAPGLIIATGSVGKNLASKTNVYISSSAGARWREALPGPHYYTWGDHGGIITAIAQGMETNELKYSTNEGETWKTFIFSEKPVFVYGLLTEPGEKSTVFTIFGSNKENVHSWLILQVNATDALGVPCTEN-DYKLWSPSDERGN--ECLLGHKTVFKRRTPHATCFNGEDFDRPVVVSNCSCTREDYECDFGFK-MSEDLSLEVCVPDPEFSGKSYSPPVPCPVGSTYRRTRGYRKISGDTCSGGDVEARLEGELVPCPLAEENEFILYAVRKSIYRYDLASGATEQLPLTGLRAAVALDFDYEHNCLYWSDLALDVIQRLCLNGSTGQEVI-INSGLETVEALAFEPLSQLLYWVDAGFKKIEVANPDGDFRLTIVNSSVLDRPRALVLVPQEGVMFWTDWGDLKPGIYRSNMDGSAAYHLV--SEDVKWPNGISVD--DQWIYWTDAYLECIERITFSGQQRSVILDN-LPHPYAIAVFKNEIYWDDWSQLSIFRASKYSGSQMEILANQLTGLMDMKIFYKGKNT-GSNACVP--RPCSLLCLPKANNSRSCRCPEDVSSSVLPSGDLMCDCP--QGYQLKNNTCVKQEN-TCLRNQYRCSNGN-CINSIWWCDFDNDCGDMSDERNCPT-TICDLDTQFRCQESGTCIPLSYKCDLEDDCGDNSDESHCEMHQCRSDEYNCSSGMCIRSSWVCDGDNDCRDWSDEANC---TAIYHT--CEASNFQC---RNGHCIPQRWACDGDTDCQDGSDEDPVNCEKK-CNGFR--CPNG-TCIPSSKHCDGLRDCSDGSDEQHCE----------PLCTHFMDFVCKNRQQCLFHSMVCDGIIQCRDGSDEDAAFAGCSQDPEFHKVCDEFGFQCQNGV-CISLIWKCDGMDDCGDYSDE--ANCENPTEAPNCSRYFQFRCENGHCIPNRWKCDRENDCGDWSDEKDCGDSHILPFSTPGPSTCLPNYYRCSSGTCVMDTWVCDGYRDCADGSDEEA 1452 HSP 2 Score: 117.857 bits (294), Expect = 5.726e-26 Identity = 100/298 (33.56%), Postives = 126/298 (42.28%), Query Frame = 2
Query: 3392 GPLQCKCPNEEVFDRKTNACR--PPKNETCTAHQFTCTHSKECIPDHWXXXXXXXXXXXSDEWGCA----APEVCKVNQFRCANGACILRSWKCDNEEDCSDGSDEKNC--------TTAG---CAVGHVKCPTSECIPNNWVCDGEDDCADGWDEKDCSQTTTVRPTVVCPATQFGCIKYNRYRCLSNSFKXXXXXXXXXXSDERGCAKVICSALERNCDNGLQCIARRYWCNGWPDCNDGSDENNCAFTTPPRPTSPEICSGNGTYPCDNRRRCYGPEQRCNGIPDCNDGADEKGC 4234
G +QC+ ++E D C P ++ C F C + CI WKCDG DCGD SDE C AP + QFRC NG CI WKCD E DC D SDEK+C +T G C + +C + C+ + WVCDG DCADG DE+ C V T TQ G C E C CI C+G DC DG DE NC PT + + + C++ C +RC+G DC+D +DEK C
Sbjct: 1298 GIIQCRDGSDE--DAAFAGCSQDPEFHKVCDEFGFQCQNGV-CISLIWKCDGMDDCGDYSDEANCENPTEAPNCSRYFQFRCENGHCIPNRWKCDRENDCGDWSDEKDCGDSHILPFSTPGPSTCLPNYYRCSSGTCVMDTWVCDGYRDCADGSDEEACPLLANV--TAASTPTQLG----------------------------------RCDRFEFECHQPKTCIPNWKRCDGHQDCQDGRDEANC-------PTHSTLTCMSREFQCEDGEACIVLSERCDGFLDCSDESDEKAC 1549 HSP 3 Score: 84.7297 bits (208), Expect = 7.244e-16 Identity = 74/245 (30.20%), Postives = 102/245 (41.63%), Query Frame = 2
Query: 3428 FDRKTNACRPPKNETCTAH-QFTCTHSKECIPDHWXXXXXXXXXXXSDEWGCA----------APEVCKVNQFRCANGACILRSWKCDNEEDCSDGSDEKNC------TTAGCAVGHVKCPTSE--------CIPNNWVCDGEDDCADGWDEKDCSQTTTVRPTVVCPATQFGCIKYNRYRCLSNSFKXXXXXXXXXXSDERGCAKVICSALERNCDNGLQCIARRYWCNGWPDCNDGSDENNCA 4087
+ + N P + C+ + QF C + CIP+ WKCD + DCGD SDE C P C N +RC++G C++ +W CD DC+DGSDE+ C T A +C E CIPN CDG DC DG DE +C +T+ C+S F+ C++G CI C+G+ DC+D SDE C+
Sbjct: 1353 YSDEANCENPTEAPNCSRYFQFRCENG-HCIPNRWKCDRENDCGDWSDEKDCGDSHILPFSTPGPSTCLPNYYRCSSGTCVMDTWVCDGYRDCADGSDEEACPLLANVTAASTPTQLGRCDRFEFECHQPKTCIPNWKRCDGHQDCQDGRDEANCPTHSTL-------------------TCMSREFQ---------------------------CEDGEACIVLSERCDGFLDCSDESDEKACS 1550 The following BLAST results are available for this feature:
BLAST of TCONS_00005448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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