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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005465 ID=TCONS_00005465|Name=TCONS_00005465|organism=Clytia hemisphaerica|type=transcript|length=2727bpRun BLAST on NCBI transcript from alignment at sc0000053:133619..178831- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005465 ID=TCONS_00005465|Name=TCONS_00005465|organism=Clytia hemisphaerica|type=transcript|length=45213bp|location=Sequence derived from alignment at sc0000053:133619..178831- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005465 vs. Swiss-Prot (Human)
Match: ATP7B (Copper-transporting ATPase 2 OS=Homo sapiens GN=ATP7B PE=1 SV=4) HSP 1 Score: 207.608 bits (527), Expect = 6.123e-55 Identity = 158/533 (29.64%), Postives = 266/533 (49.91%), Query Frame = 3
Query: 786 LSALLVSAPSTVLLAETN-----QSVDIKDVAMGTLIVVCAGEQIPLDGKVIKGKAAVDESSITGEATPVGKSTDSTVFSGTVIQSGYLKIETTSDYKTSTLSRVSEYIEEAKAASSNTEEILNRFAKFYTPLIVGVALLIFIVPLII-----GKVKNNFTDKD---------MKDWSERALKVLVVACPCSLIIAVPVTMISGISRASKDGILVKGAQFLEKMASIQMFCFDKTGTLTEGRFQVVAEHHVSGDRS-----DAVMYAAALETKSSHPVAAAIVNHFS----------------------GCITDKIEQF--GSQINLPDVTKFKNEAGMGLSGVVSEKE-------VLVGNLDLMQLYSVLVSDKEKTLLEDWSNMGRTVVFVANEGRLSLILGLADKVRDSSRETIQGLTQHNVRCCMLTGDTEGPARLISNETGIVEYSFSMKPHEKYEWLVSKQKQDKLKVAMCGDGVNDCPSLAAADVGIAIGPTATGLAVDSAGITLMSDDLSRVVTLLLLAKYCRTI 2219
L +L + + V L E N + V ++ V G ++ V G + P+DGKV++G DES ITGEA PV K STV +G++ G + I+ T +TL+++ + +EEA+ + + +++ +RF+ ++ P I+ ++ L +V ++I G V+ F + + ++ + ++ VL +ACPCSL +A P ++ G A+++GIL+KG + LE I+ FDKTGT+T G +V+ + GD + + E S HP+ A+ + GC +E S+ L NEAG + +EK+ VL+GN + ++ + +S + D G+T + VA +G L ++ +AD V+ + + L V ++TGD AR I+ + GI + + P K + Q + K KVAM GDGVND P+LA AD+G+AIG T T +A+++A + L+ +DL VV + L+K RT+
Sbjct: 795 LMSLQATEATVVTLGEDNLIIREEQVPMELVQRGDIVKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSTVIAGSINAHGSVLIKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIMSTLTLVVWIVIGFIDFGVVQRYFPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVM-RVLLLGDVATLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSNVEGILAHSERPLSAPASHLNEAG----SLPAEKDAVPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAVHTLQSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNKGK-KVAMVGDGVNDSPALAQADMGVAIG-TGTDVAIEAADVVLIRNDLLDVVASIHLSK--RTV 1318 The following BLAST results are available for this feature:
BLAST of TCONS_00005465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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