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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005466 ID=TCONS_00005466|Name=TCONS_00005466|organism=Clytia hemisphaerica|type=transcript|length=2801bpRun BLAST on NCBI transcript from alignment at sc0000053:133619..179240- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005466 ID=TCONS_00005466|Name=TCONS_00005466|organism=Clytia hemisphaerica|type=transcript|length=45622bp|location=Sequence derived from alignment at sc0000053:133619..179240- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00005466 vs. Swiss-Prot (Human)
Match: ATP7B (Copper-transporting ATPase 2 OS=Homo sapiens GN=ATP7B PE=1 SV=4) HSP 1 Score: 209.92 bits (533), Expect = 1.279e-55 Identity = 159/533 (29.83%), Postives = 263/533 (49.34%), Query Frame = 2
Query: 860 LSALLVSAPSTVLLAETN-----QSVDIKDVAMGTLIVVCAGEQIPLDGKVIKGKAAVDESSITGEATPVGKSTDSTVFSGTVIQSGYLKIETTSDYKTSTLSRVSEYIEEAKAASSNTEEILNRFAKFYTPLIVGVALLIFIVPLIVGKVKNG-----FTTEDMKIWSTR---------ALKVLVVACPCSLIIAVPVTMISGISRASKDGILVKGAQFLEKMASIQMFCFDKTGTLTEG-----RFQVVAEHHVSGERSDAVMYAAALETKSSHPVAAAIVNHFS----------------------GCITDKIEQF--GSQINLPDVTKFKNEAGMGLSGVVSEKE-------VLVGNLDLMQLYSVLVSDKEKTLLEDWSNMGRTVVFVANEGRLSLILGLADKVRDSSRETIQGLTQHNVRCCMLTGDTEGPARLISNETGIVEYSFSMKPHEKYEWLVSKQKQDKLKVAMCGDGVNDCPSLAAADVGIAIGPTATGLAVDSAGITLMSDDLSRVVTLLLLAKYCRTI 2293
L +L + + V L E N + V ++ V G ++ V G + P+DGKV++G DES ITGEA PV K STV +G++ G + I+ T +TL+++ + +EEA+ + + +++ +RF+ ++ P I+ ++ L +V +++G + G F + I T ++ VL +ACPCSL +A P ++ G A+++GIL+KG + LE I+ FDKTGT+T G R ++ + R + A E S HP+ A+ + GC +E S+ L NEAG + +EK+ VL+GN + ++ + +S + D G+T + VA +G L ++ +AD V+ + + L V ++TGD AR I+ + GI + + P K + Q + K KVAM GDGVND P+LA AD+G+AIG T T +A+++A + L+ +DL VV + L+K RT+
Sbjct: 795 LMSLQATEATVVTLGEDNLIIREEQVPMELVQRGDIVKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSTVIAGSINAHGSVLIKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIMSTLTLVVWIVIGFIDFGVVQRYFPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVMRVLLLGDVATLPLRKVLAVVGTA-EASSEHPLGVAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSNVEGILAHSERPLSAPASHLNEAG----SLPAEKDAVPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAVHTLQSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNKGK-KVAMVGDGVNDSPALAQADMGVAIG-TGTDVAIEAADVVLIRNDLLDVVASIHLSK--RTV 1318 The following BLAST results are available for this feature:
BLAST of TCONS_00005466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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