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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005481 ID=TCONS_00005481|Name=TCONS_00005481|organism=Clytia hemisphaerica|type=transcript|length=1347bp
caaactcCTCTTATTTTAACagGGTTTCTGACGAAGGTGACAGACCAGTT
GAATCTTTCTGCTGTAAAGATGAGACGACTAGCAGTGCTTTTCGCATTTG
GTGTCTTCGTGGCATTATCTTCTTCAGCTCTTGTGGAAGTTCAAGAAGAC
TATTACGAAGATGACGAAATTTACGTAACCCAACCAACTCCCACCGAAAA
CCGAAACAATAACAAAGTCAACGCAAAACGTATTGTTCAACCTTACTGGA
CCCCAAGACGACCCAGAACTACATACGATCCATGGGGACCCACAAGACCT
TATTGGTGGAGCACGGCACCCCGTGGAACTGACCGACCACGAACATATGA
TCCTTGGGGACCCACCCGACCTTACTGGTGGAGTACCAGACGACCGTGGA
ATACTGATCGACCAACATACGATCCTTGGGGTCCTACCAGGCCATACTGG
TGGAGTACTAGACGACCATGGGGTACAAGACCTTGGGGTACCAGAAGACC
ATGGGGTACAAGACCTTGGGGAACTAGACGACCATGGGGTACTAGAAGAC
CATGGGGCACCAGACGACCATGGGGAACAAGAAGACCATGGGGTACAAGA
AGACCTTGGGGAACAAGACGACCATGGGGCACCAGAAGACCATGGTGGAC
CAGACGACCATGGGGTACAAGACGACCTTGGGGAACAAGACGACCATGGG
GCACCAGAAGACCATGGTGGACCAGACGACCATGGGGTACAAGACGACCA
TGGGGTACAAGACGACCATGGGGAACCAGAAGACCTTGGGGTACCAGAAA
ACCTTGGGGAACCAGACGACCATGGGGTACAAGACGACCATGGGGTACAA
GACGACCATGGGGAACCAGAAGACCTTGGGGTACAAGACGACCTTGGGGA
ACAAGACGACCATGGGGTACAAGAAGACCATGGGGTACAAGAAGACCATG
GGGTACGAGAAGACCACTCAACCCATACGTTGAGCGTAGAATCCAGAATT
TCAGCCGTATGATTGGAATGAAGTTGAGAGAGTTTGTCATTTCATTGCGT
AGAAACCAACCCCCGCGTCGACCAAATGAATAATGTACCAATGGATGATC
TTCCAGCTCCGTTGATTTGAATTATATtttactgaggttaagcataccaa
gatgttgacaaaaaatgtaataggctagtgaaaattggattgatttgaaa
tttgattggttgaaactcactagccgtagcctgttaaattttcgttcgtc
gtcgtgattttcaCGATTTACTTAACTTCACTATTATCAAAGTTTATGGT
TTTatgtaaataaaaatgattAATTTGAATGAGCGGTTGTTTTGCCA Run BLAST on NCBI protein sequence of TCONS_00005481-protein >TCONS_00005481-protein ID=TCONS_00005481-protein|Name=TCONS_00005481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
QTPLILTGFLTKVTDQLNLSAVKMRRLAVLFAFGVFVALSSSALVEVQED
YYEDDEIYVTQPTPTENRNNNKVNAKRIVQPYWTPRRPRTTYDPWGPTRP
YWWSTAPRGTDRPRTYDPWGPTRPYWWSTRRPWNTDRPTYDPWGPTRPYW
WSTRRPWGTRPWGTRRPWGTRPWGTRRPWGTRRPWGTRRPWGTRRPWGTR
RPWGTRRPWGTRRPWWTRRPWGTRRPWGTRRPWGTRRPWWTRRPWGTRRP
WGTRRPWGTRRPWGTRKPWGTRRPWGTRRPWGTRRPWGTRRPWGTRRPWG
TRRPWGTRRPWGTRRPWGTRRPLNPYVERRIQNFSRMIGMKLREFVISLR
RNQPPRRPNE Run BLAST on NCBI transcript from alignment at sc0000053:346689..350031- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005481 ID=TCONS_00005481|Name=TCONS_00005481|organism=Clytia hemisphaerica|type=transcript|length=3343bp|location=Sequence derived from alignment at sc0000053:346689..350031- (Clytia hemisphaerica)
CAAACTCCTCTTATTTTAACAGGTAATTTATGAAAAGCAAATCCCTCGTT
TTCGCTACATTTTCCCCTCGTTTCCCCCTGGATTTTTCACAATAATTAAT
GCCTCTGTATTTTCCAGGGTTTTTTAGGGAGAATTTAACTTCCAAACACC
GAAGGGGGGGGTAAACTTTTTTGGAACAGCCAACTCCTGTAGCAACTCTC
AATGACTAATTAGACAAAAGACTAGGCACAAAATTTGTACAACGTTGAGC
TTTACTTGTTGACATACGATTTAGGTCCTTAATGGGAATCGAATCTTATG
TTTGGATTACGTCAATCAGTTTCAAAGTAAATATTAGTTTTTGCCAACGT
ATGCCTATTTTTAAGGAGTTGGATGTTTGGTTTGTAAACCCCACTCGATT
TCACGGATGAATAGATTTTGCAAAATTGACAAAAATTTGAGGTCAGTATT
GGCGCTATAGAAACCCCTTTCTGATTGGCTCGAGTTACTTTTTAATCACC
CTTTTACCCAATCAACTGTCATCTTTTATCTGTAATTGTAACACTTTTTT
TTCTCTCATGCAATAAATTTAGGGTTTCTGACGAAGGTGACAGACCAGTT
GAATCTTTCTGCTGTAAAGATGAGACGACTAGCAGTGCTTTTCGCATTTG
GTGTCTTCGTGGCATTATCTTCTTCAGCTCGTAAGTATACTGTACTTCTC
AATGGGCTCTTCAAGAAAATTTGTGTACATGGGGGGTGGAGGATATATTG
GATATTTTGTCCGGGTGGTAGTGAAAAATCTGCAAAAGATACCTGCTTGT
TTTGGGGGCAAATTTGCTCTGTTTAGACCCCTGAATGTCTAATTTTTGAA
TGTCTTTTTGTGGAGAATAAAGGAAATAAAACTGAAGTTCCGAGTTCCCC
AAGGAGCATTAATTTGGGGGCCTTTTNAATATTGGTGAAAATTGAGTTAA
AAATTTCTCGCGAGAAATCGGTCATACTTTAAACGTGCTTTTTTTTGGGT
TTTTGGGAGAGGAAAGACTTTTATTTTCCTCACGCAAGGATGAAGATAAA
AAACAAATAGAAATTCAAATTAAGTATTAGAGGTACTTGGCGACACCGAT
CACTCCAAAGACCACAGTGCTTTACGGTAGAATATAAAGAGTGCCTTTTT
TCAATACCTCTTAACAGAGTCAACAATTATTTAACAATTAAACTCAATGC
GTAAGTAAAAGCGTTTTCATTTTGCTATCTCAATAGAACAAAAAATAGCA
AACATTGTTTAAAAAATTTCATAATTGAATTGGGAATAAGTCATCAACTT
TTCTCATATTGTCAAGTCCATTAAAAATTGAAATGTTTTTATCAGAGTAT
CAAATAGAAGGGAAATGTCATCGGAGCTTTATTAATCTCAAGGGTAATCA
TAAATATGATGTCTTTTTGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAATTATGCTGATAGTGCTATTGCACAGTCAG
TTGTGTTTCTCCATCAAGGAGAAATGTGCTCTCTTGAATGGAAGTGCACT
TGGCGAATAGAATTGAATATACAATCAAAAAGGCGCGAAAAAAATTGCCG
TGTATTTAAAAATCCCTAGCGAAAAAGCCTCATGCGAGAATGGGAGAGTT
CCGATTTAAGCGTATTATAATATAGATAATAATTTGTTTCAGTTGTGGAA
GTTCAAGAAGACTATTACGAAGATGACGAAATTTACGTAACCCAACCAAC
TCCCACCGAAAACCGAAACAATAACAAAGTCAACGCAAAACGTATTGTTC
AACCTTACTGGACCCCAAGACGACCCAGAACTACATACGATCCATGGGGA
CCCACAAGACCTTATTGGTGGAGCACGGCACCCCGTGGAACTGACCGACC
ACGAACATATGATCCTTGGGGACCCACCCGACCTTACTGGTGGAGTACCA
GACGACCGTGGAATACTGATCGACCAACATACGATCCTTGGGGTCCTACC
AGGCCATACTGGTGGAGTACTAGACGACCATGGGGTACAAGACCTTGGGG
TACCAGAAGACCATGGGGTACAAGACCTTGGGGAACTAGACGACCATGGG
GTACTAGAAGACCATGGGGCACCAGACGACCATGGGGAACAAGAAGACCA
TGGGGTACAAGAAGACCTTGGGGAACAAGACGACCATGGGGCACCAGAAG
ACCATGGTGGACCAGACGACCATGGGGTACAAGACGACCTTGGGGAACAA
GACGACCATGGGGCACCAGAAGACCATGGTGGACCAGACGACCATGGGGT
ACAAGACGACCATGGGGTACAAGACGACCATGGGGAACCAGAAGACCTTG
GGGTACCAGAAAACCTTGGGGAACCAGACGACCATGGGGTACAAGACGAC
CATGGGGTACAAGACGACCATGGGGAACCAGAAGACCTTGGGGTACAAGA
CGACCTTGGGGAACAAGACGACCATGGGGTACAAGAAGACCATGGGGTAC
AAGAAGACCATGGGGTACGAGAAGACCACTCAACCCATACGTTGAGCGTA
GAATCCAGAATTTCAGCCGTATGATTGGAATGAAGTTGAGAGAGTTTGTC
ATTTCATTGGTAAGGGCCTAAGATCATTAGTCTTTTTGAGTAAATTTAAG
ATAAATTTTGAAAAAGAAAATAATTTTAAAATCTGCTTAAATCGTCAAGT
TACAGTGACGAGATTCTGAGGCAAGCTACGAAGTCCCTCCCTCCCCCCGA
CCCCGACCCCGACGAAAAATCTTTTTTGGCAACTTTCAGGGGCTAGTGAC
AAAGATTTTCACAAAAATTACGAATTTCTTCGACGAGAAGTTTTGTATAA
CGCCTAAGGTATCTCACTCAATTTTCATGCTTTTATTTTACAGCGTAGAA
ACCAACCCCCGCGTCGACCAAATGAATAATGTACCAATGGATGATCTTCC
AGCTCCGTTGATTTGAATTATATTTTACTGAGGTTAAGCATACCAAGATG
TTGACAAAAAATGTAATAGGCTAGTGAAAATTGGATTGATTTGAAATTTG
ATTGGTTGAAACTCACTAGCCGTAGCCTGTTAAATTTTCGTTCGTCGTCG
TGATTTTCACGATTTACTTAACTTCACTATTATCAAAGTTTATGGTTTTA
TGTAAATAAAAATGATTAATTTGAATGAGCGGTTGTTTTGCCA Coding sequence (CDS) from alignment at sc0000053:346689..350031- >TCONS_00005481 ID=TCONS_00005481|Name=TCONS_00005481|organism=Clytia hemisphaerica|type=CDS|length=4332bp|location=Sequence derived from alignment at sc0000053:346689..350031- (Clytia hemisphaerica)
CGTAGAAACCAACCCCCGCGTCGACCAAATGAATAATTGTGGAAGTTCAA
GAAGACTATTACGAAGATGACGAAATTTACGTAACCCAACCAACTCCCAC
CGAAAACCGAAACAATAACAAAGTCAACGCAAAACGTATTGTTCAACCTT
ACTGGACCCCAAGACGACCCAGAACTACATACGATCCATGGGGACCCACA
AGACCTTATTGGTGGAGCACGGCACCCCGTGGAACTGACCGACCACGAAC
ATATGATCCTTGGGGACCCACCCGACCTTACTGGTGGAGTACCAGACGAC
CGTGGAATACTGATCGACCAACATACGATCCTTGGGGTCCTACCAGGCCA
TACTGGTGGAGTACTAGACGACCATGGGGTACAAGACCTTGGGGTACCAG
AAGACCATGGGGTACAAGACCTTGGGGAACTAGACGACCATGGGGTACTA
GAAGACCATGGGGCACCAGACGACCATGGGGAACAAGAAGACCATGGGGT
ACAAGAAGACCTTGGGGAACAAGACGACCATGGGGCACCAGAAGACCATG
GTGGACCAGACGACCATGGGGTACAAGACGACCTTGGGGAACAAGACGAC
CATGGGGCACCAGAAGACCATGGTGGACCAGACGACCATGGGGTACAAGA
CGACCATGGGGTACAAGACGACCATGGGGAACCAGAAGACCTTGGGGTAC
CAGAAAACCTTGGGGAACCAGACGACCATGGGGTACAAGACGACCATGGG
GTACAAGACGACCATGGGGAACCAGAAGACCTTGGGGTACAAGACGACCT
TGGGGAACAAGACGACCATGGGGTACAAGAAGACCATGGGGTACAAGAAG
ACCATGGGGTACGAGAAGACCACTCAACCCATACGTTGAGCGTAGAATCC
AGAATTTCAGCCGTATGATTGGAATGAAGTTGAGAGAGTTTGTCATTTCA
TTGGGTTTCTGACGAAGGTGACAGACCAGTTGAATCTTTCTGCTGTAAAG
ATGAGACGACTAGCAGTGCTTTTCGCATTTGGTGTCTTCGTGGCATTATC
TTCTTCAGCTCCAAACTCCTCTTATTTTAACAGCGTAGAAACCAACCCCC
GCGTCGACCAAATGAATAATTGTGGAAGTTCAAGAAGACTATTACGAAGA
TGACGAAATTTACGTAACCCAACCAACTCCCACCGAAAACCGAAACAATA
ACAAAGTCAACGCAAAACGTATTGTTCAACCTTACTGGACCCCAAGACGA
CCCAGAACTACATACGATCCATGGGGACCCACAAGACCTTATTGGTGGAG
CACGGCACCCCGTGGAACTGACCGACCACGAACATATGATCCTTGGGGAC
CCACCCGACCTTACTGGTGGAGTACCAGACGACCGTGGAATACTGATCGA
CCAACATACGATCCTTGGGGTCCTACCAGGCCATACTGGTGGAGTACTAG
ACGACCATGGGGTACAAGACCTTGGGGTACCAGAAGACCATGGGGTACAA
GACCTTGGGGAACTAGACGACCATGGGGTACTAGAAGACCATGGGGCACC
AGACGACCATGGGGAACAAGAAGACCATGGGGTACAAGAAGACCTTGGGG
AACAAGACGACCATGGGGCACCAGAAGACCATGGTGGACCAGACGACCAT
GGGGTACAAGACGACCTTGGGGAACAAGACGACCATGGGGCACCAGAAGA
CCATGGTGGACCAGACGACCATGGGGTACAAGACGACCATGGGGTACAAG
ACGACCATGGGGAACCAGAAGACCTTGGGGTACCAGAAAACCTTGGGGAA
CCAGACGACCATGGGGTACAAGACGACCATGGGGTACAAGACGACCATGG
GGAACCAGAAGACCTTGGGGTACAAGACGACCTTGGGGAACAAGACGACC
ATGGGGTACAAGAAGACCATGGGGTACAAGAAGACCATGGGGTACGAGAA
GACCACTCAACCCATACGTTGAGCGTAGAATCCAGAATTTCAGCCGTATG
ATTGGAATGAAGTTGAGAGAGTTTGTCATTTCATTGGGTTTCTGACGAAG
GTGACAGACCAGTTGAATCTTTCTGCTGTAAAGATGAGACGACTAGCAGT
GCTTTTCGCATTTGGTGTCTTCGTGGCATTATCTTCTTCAGCTCCAAACT
CCTCTTATTTTAACAGCGTAGAAACCAACCCCCGCGTCGACCAAATGAAT
AATTGTGGAAGTTCAAGAAGACTATTACGAAGATGACGAAATTTACGTAA
CCCAACCAACTCCCACCGAAAACCGAAACAATAACAAAGTCAACGCAAAA
CGTATTGTTCAACCTTACTGGACCCCAAGACGACCCAGAACTACATACGA
TCCATGGGGACCCACAAGACCTTATTGGTGGAGCACGGCACCCCGTGGAA
CTGACCGACCACGAACATATGATCCTTGGGGACCCACCCGACCTTACTGG
TGGAGTACCAGACGACCGTGGAATACTGATCGACCAACATACGATCCTTG
GGGTCCTACCAGGCCATACTGGTGGAGTACTAGACGACCATGGGGTACAA
GACCTTGGGGTACCAGAAGACCATGGGGTACAAGACCTTGGGGAACTAGA
CGACCATGGGGTACTAGAAGACCATGGGGCACCAGACGACCATGGGGAAC
AAGAAGACCATGGGGTACAAGAAGACCTTGGGGAACAAGACGACCATGGG
GCACCAGAAGACCATGGTGGACCAGACGACCATGGGGTACAAGACGACCT
TGGGGAACAAGACGACCATGGGGCACCAGAAGACCATGGTGGACCAGACG
ACCATGGGGTACAAGACGACCATGGGGTACAAGACGACCATGGGGAACCA
GAAGACCTTGGGGTACCAGAAAACCTTGGGGAACCAGACGACCATGGGGT
ACAAGACGACCATGGGGTACAAGACGACCATGGGGAACCAGAAGACCTTG
GGGTACAAGACGACCTTGGGGAACAAGACGACCATGGGGTACAAGAAGAC
CATGGGGTACAAGAAGACCATGGGGTACGAGAAGACCACTCAACCCATAC
GTTGAGCGTAGAATCCAGAATTTCAGCCGTATGATTGGAATGAAGTTGAG
AGAGTTTGTCATTTCATTGGGTTTCTGACGAAGGTGACAGACCAGTTGAA
TCTTTCTGCTGTAAAGATGAGACGACTAGCAGTGCTTTTCGCATTTGGTG
TCTTCGTGGCATTATCTTCTTCAGCTCCAAACTCCTCTTATTTTAACAGC
GTAGAAACCAACCCCCGCGTCGACCAAATGAATAATTGTGGAAGTTCAAG
AAGACTATTACGAAGATGACGAAATTTACGTAACCCAACCAACTCCCACC
GAAAACCGAAACAATAACAAAGTCAACGCAAAACGTATTGTTCAACCTTA
CTGGACCCCAAGACGACCCAGAACTACATACGATCCATGGGGACCCACAA
GACCTTATTGGTGGAGCACGGCACCCCGTGGAACTGACCGACCACGAACA
TATGATCCTTGGGGACCCACCCGACCTTACTGGTGGAGTACCAGACGACC
GTGGAATACTGATCGACCAACATACGATCCTTGGGGTCCTACCAGGCCAT
ACTGGTGGAGTACTAGACGACCATGGGGTACAAGACCTTGGGGTACCAGA
AGACCATGGGGTACAAGACCTTGGGGAACTAGACGACCATGGGGTACTAG
AAGACCATGGGGCACCAGACGACCATGGGGAACAAGAAGACCATGGGGTA
CAAGAAGACCTTGGGGAACAAGACGACCATGGGGCACCAGAAGACCATGG
TGGACCAGACGACCATGGGGTACAAGACGACCTTGGGGAACAAGACGACC
ATGGGGCACCAGAAGACCATGGTGGACCAGACGACCATGGGGTACAAGAC
GACCATGGGGTACAAGACGACCATGGGGAACCAGAAGACCTTGGGGTACC
AGAAAACCTTGGGGAACCAGACGACCATGGGGTACAAGACGACCATGGGG
TACAAGACGACCATGGGGAACCAGAAGACCTTGGGGTACAAGACGACCTT
GGGGAACAAGACGACCATGGGGTACAAGAAGACCATGGGGTACAAGAAGA
CCATGGGGTACGAGAAGACCACTCAACCCATACGTTGAGCGTAGAATCCA
GAATTTCAGCCGTATGATTGGAATGAAGTTGAGAGAGTTTGTCATTTCAT
TGGGTTTCTGACGAAGGTGACAGACCAGTTGAATCTTTCTGCTGTAAAGA
TGAGACGACTAGCAGTGCTTTTCGCATTTGGTGTCTTCGTGGCATTATCT
TCTTCAGCTCCAAACTCCTCTTATTTTAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005481-exon-sc0000053-1575043694:350010..350031 | TCONS_00005481-exon-sc0000053-1575043694:350010..350031 | Clytia hemisphaerica | exon |
| TCONS_00005481-exon-sc0000053-1575043694:349352..349459 | TCONS_00005481-exon-sc0000053-1575043694:349352..349459 | Clytia hemisphaerica | exon |
| TCONS_00005481-exon-sc0000053-1575043694:347273..348189 | TCONS_00005481-exon-sc0000053-1575043694:347273..348189 | Clytia hemisphaerica | exon |
| TCONS_00005481-exon-sc0000053-1575043694:346689..346988 | TCONS_00005481-exon-sc0000053-1575043694:346689..346988 | Clytia hemisphaerica | exon |
| TCONS_00005481-exon-sc0000053-1510915933:350010..350031 | TCONS_00005481-exon-sc0000053-1510915933:350010..350031 | Clytia hemisphaerica | exon |
| TCONS_00005481-exon-sc0000053-1510915933:349352..349459 | TCONS_00005481-exon-sc0000053-1510915933:349352..349459 | Clytia hemisphaerica | exon |
| TCONS_00005481-exon-sc0000053-1510915933:347273..348189 | TCONS_00005481-exon-sc0000053-1510915933:347273..348189 | Clytia hemisphaerica | exon |
| TCONS_00005481-exon-sc0000053-1510915933:346689..346988 | TCONS_00005481-exon-sc0000053-1510915933:346689..346988 | Clytia hemisphaerica | exon |
| TCONS_00005481-exon-sc0000053-1491911889:350010..350031 | TCONS_00005481-exon-sc0000053-1491911889:350010..350031 | Clytia hemisphaerica | exon |
| TCONS_00005481-exon-sc0000053-1491911889:349352..349459 | TCONS_00005481-exon-sc0000053-1491911889:349352..349459 | Clytia hemisphaerica | exon |
| TCONS_00005481-exon-sc0000053-1491911889:347273..348189 | TCONS_00005481-exon-sc0000053-1491911889:347273..348189 | Clytia hemisphaerica | exon |
| TCONS_00005481-exon-sc0000053-1491911889:346689..346988 | TCONS_00005481-exon-sc0000053-1491911889:346689..346988 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:346689..350031 - |
Blast
The following BLAST results are available for this feature:
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