TCONS_00005488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005488
Unique NameTCONS_00005488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length704

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005488 ID=TCONS_00005488|Name=TCONS_00005488|organism=Clytia hemisphaerica|type=transcript|length=704bp
attttcactCGCTCGACTAAACTTTAACCATAAACATAGTTGTCTCCGTG
AATTGTTAACAGATTAGTATCAAAAACACCATTATTGCTGCATAGCTTAA
AACCCCTAAATATTTGTTTAACTTTTTGATCCAAAAGCAAAAAccgttca
attttcattttttttctgattttttttttcaaaatatttcatttttcatt
ttgtttcgaaatcgAGAACGCTTCAAACtaagatgaaatttttgattttt
cttttattgggCTTAGTTAGCTCTACATTGATCTGTGGATACGCTGTTAT
TGCAGACGGCCCAACTGAAGAAATAACTGAAGACATTTCAGAGGACGCCC
TTCAAGTATCCAATGAAAATACCGCCTCTGTTTTACCCAATCAAGAGGAC
GCCCAAGTTGAGACGCCCGCTAACGCCCAACAAACGCCACAATTGATTCA
AAATACAGAAGTGGCATCAGAAGATGAAAGTGTAGGTGCGGATGGAGAAC
TACAAAAAGAACAAGAGCAAGGAAGTGGGACATCAGATTTCAATCAATTA
ACAAATGATTTGGGTATGGAAGGATCTGGTTCAGGTGGTGACAAAAATgA
AAATCAGGAAGaagcacaaaaagaaaaagaaagcccGTCACAAAATACCG
AAGAAAAAGCTGTAAGTATTTCTTCTATTAGAGAAATTTTATGAAGACAT
CTGA
Run BLAST on NCBI

protein sequence of TCONS_00005488-protein

>TCONS_00005488-protein ID=TCONS_00005488-protein|Name=TCONS_00005488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MKFLIFLLLGLVSSTLICGYAVIADGPTEEITEDISEDALQVSNENTASV
LPNQEDAQVETPANAQQTPQLIQNTEVASEDESVGADGELQKEQEQGSGT
SDFNQLTNDLGMEGSGSGGDKNENQEEAQKEKESPSQNTEEKAVSISSIR
EIL
Run BLAST on NCBI

transcript from alignment at sc0000053:513595..516738-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005488 ID=TCONS_00005488|Name=TCONS_00005488|organism=Clytia hemisphaerica|type=transcript|length=3144bp|location=Sequence derived from alignment at sc0000053:513595..516738- (Clytia hemisphaerica)
ATTTTCACTCGCTCGACTAAACTTTAACCATAAACATAGTTGTCTCCGTG
AATTGTTAACAGATTAGTATCAAAAACACCATTATTGCTGCATAGCTTAA
AACCCCTAAATATTTGTTTAACTTTTTGATCCAAAAGCAAAAACCGTTCA
ATTTTCATTTTTTTTCTGATTTTTTTTTTCAAAATATTTCATTTTTCATT
TTGTTTCGAAATCGAGAACGCTTCAAACTAAGATGAAATTTTTGATTTTT
CTTTTATTGGGCTTAGTTAGCTCTACATTGATCTGTGGATACGCTGTTAT
TGCAGGTAAGATATCAAATTTCTTGATTGCTCATCTGAACCATTTTTAAG
TTTGCTGTTTCGACCAAACTGGTGACATGAAGCCCAATGAAAAATGAAAA
AGCATCGGTATTTGAATCGTAACTCCTGGTTGACTCCAAATAGATCACAC
TGCGACAAATTTCAAAGGGTCAAACTGACTCTGAAAAAAAGAACCTAAAG
CGAGTCCGTATAGGACCTACCTTTTTCCGAGTCAAATTGATTCGTTGGAA
GAATCGTGAAACTAATAAATTGGGAGTAGTAATTTCACAGAAGAAAAAAC
TGGGACAAGCCGTAGACAAGTACACGTTTTTTTTTATAAGGAACACGTTT
ATAAGGAACTCGAGGCTGAAAATGGTCCAAAAAAATAAGGAATTGTTAAG
GAACTGCTCAGGCTGAGAATAAGAAAACCAGTTTTAAGGAATCCAATTTT
TGCCAATCCAAACTTAGCAGCTATGTAAATAAGGAGCTCGATAAGGAACT
TTGAGGCTGAAATTCTCTGTAAAAATAAGGAACTCCAGGCTCAGAGCAAA
GGTAAGGTTCCTTATCCTTATAAAAAAAAAACGTGTATACATTAATTTGT
TTACTTTATCAAATCACAGACGGCCCAACTGAAGAAATAACTGAAGACAT
TTCAGAGGACGCCCTTCAAGTATCCAATGAAAATACCGCCTCTGTTTTAC
CCAATCAAGAGGACGCCCAAGTTGAGACGCCCGCTAACGCCCAACAAACG
CCACAATTGATTCAAAATACAGAAGTGGCATCAGAAGATGAAAGTGTAGG
TGCGGATGGAGAACTACAAAAAGAACAAGGTATATCTAAATACCCCTGTC
TCACTGCCCCGGGAGAACTTTCCCAACAGTGGGGATGAGAATCACCACCG
AAATCCTAATGGGGATAGAAATTCTATTGTTCCTAGGTCAAAAATACAGT
GGTACTGTTGCTTTTGGAATGCGATTTCTTCCACTGATGAGATGGGAATG
AAATCAAAGTCAATTTCCTGGTGGGCTGAAATTTTAGGGTATTTCTCCCA
ATGGGGATGGAACTTTCCGAGTAGCTCGCTGGGTTTATGACACAACAGGG
TACCTAAGCTTTTACGCACTATTCTTTCAACGTCCTTATGTTACAAAAAT
ATTCGATGAAGGTTGATTAAACGTTTTGTTCCAAATTTGTTCCTCTCATC
ATGCTCTCATTTTACTACAATCATGGTCGAAATATATTGAGATTTTGTGC
ATTTTAACGTTTTTTCAGAATTTAAAGTTCGGGCGAGAATTGCTATTTTA
GCACTTCCACTTTCTTTCATTGGATATTTCGATTTTAGAGGGGTTTGGTG
GCTTCTAGGCTATATTCCAAGCCTTATTCGAGCAAATTTGAGCTTCCTAA
GGTCTTAAGTCTTAAGTCTCATGTTAAAACTCAGAGTTAAATCTCATCTT
TCCAACTGTAGTTTAAGGCGCTTAAAAATCATTTATGGTGTTTAAAATTT
CGCTGGGAACTCCCTTTTGTCTCAAATATTTTGTCCATGATTGTAGTCTA
GTATGACAGACGAATACAAATTTTAGTTAATACAAACTAATATTATCCTG
TTACAATTACCTAGTTATCATATAACACCCATAATGATTTATTACACGGA
TTATGAACAACTCCAGTTTATCGTTTACCATAGTCATTATAAAAAACCCT
GGTCTGGTAATGTATTGTTTTAGCTTTATTGTCAAATTTTCTTTTGTCGT
AAATAAAAAACAAGTTGCGATTTATATACTTTTTTGATCACTTTACCATT
TTCGACTCTTGGGATTGGTTTATTTTCTAGTCACATGATCAAAAACTATG
CACAACAAATCCATTTATGTGCGAAAGTTAAGTGTTAACAATAGAAAGAA
ACAAAAGCCTTCTAGACTGGGGTTCTTTATAATGACTATGGTTTTACAGG
ACTAAGTTGAAAGATACCAGAACGCAGGTTAAATTGCGAACAAAGCCAGA
TTACTCACTCAGCACAAGCCATTCATCGTGCCTCTACAAAAAACCCTCTA
CATCTTAAGCCGGTTATCTCCCAAAAAATCAGTGGAAACATCCTAGAAAA
TTCCGGCACTTAATTCCAAGTTCATTTTTCAAGTATCTGGAGTTCTTTGG
TATTTTTCTATTAGAGAGTGGGGAATACAGTTTTGGCAAAAACAAAATAG
TCCCATGCTTTAATGAATGTACAACAATGGTTTATGAAGGAAAAGCAAAA
GATCAGTTTCTAATATAAACAACCGTGCAATAAAGAATTGTTTTTACTGT
TTAGAGCAAGGAAGTGGGACATCAGATTTCAATCAATTAACAAATGATTT
GGGTATGGAAGGATCTGGTTCAGGTGGTGACAAAAATGTAAGACCACTCC
CATTTCATACATTTTTGTATTTTTCCATTCTTTGCGAGGACTTGAAGAAT
ATCAAACAGATTGGCTTCACAGTCACAGATTTCTGTAAAGCCCGAATGGC
TAGATGTCGTGCTTTAAAGCTCTTCCAGGCAAAAAAAAAGTGAATATCAA
AAAAATATTGCTGCTATTGTTTTTGAAAACCCACGAAGCTTCTTATTGGT
CAAACGCTGAAATTCAATTGTAATGTCACGTGACCTAGGTAGGATTTCCT
ACCGAAATATGGCACACTTTTAAGCCAAAGCACGAATTTGCAGTTAGCAG
ATACCATCAAAACTACATTTATCAAATTTTAATTTCAGGAAAATCAGGAA
GAAGCACAAAAAGAAAAAGAAAGCCCGTCACAAAATACCGAAGAAAAAGC
TGTAAGTATTTCTTCTATTAGAGAAATTTTATGAAGACATCTGA

Coding sequence (CDS) from alignment at sc0000053:513595..516738-

>TCONS_00005488 ID=TCONS_00005488|Name=TCONS_00005488|organism=Clytia hemisphaerica|type=CDS|length=1848bp|location=Sequence derived from alignment at sc0000053:513595..516738- (Clytia hemisphaerica)
GAAAATCAGGAAGAAGCACAAAAAGAAAAAGAAAGCCCGTCACAAAATAC
CGAAGAAAAAGCTGTAAGTATTTCTTCTATTAGAGAAATTTTATGAAGCA
AGGAAGTGGGACATCAGATTTCAATCAATTAACAAATGATTTGGGTATGG
AAGGATCTGGTTCAGGTGGTGACAAAAATACGGCCCAACTGAAGAAATAA
CTGAAGACATTTCAGAGGACGCCCTTCAAGTATCCAATGAAAATACCGCC
TCTGTTTTACCCAATCAAGAGGACGCCCAAGTTGAGACGCCCGCTAACGC
CCAACAAACGCCACAATTGATTCAAAATACAGAAGTGGCATCAGAAGATG
AAAGTGTAGGTGCGGATGGAGAACTACAAAAAGAACAAGATGAAATTTTT
GATTTTTCTTTTATTGGGCTTAGTTAGCTCTACATTGATCTGTGGATACG
CTGTTATTGCAGGAAAATCAGGAAGAAGCACAAAAAGAAAAAGAAAGCCC
GTCACAAAATACCGAAGAAAAAGCTGTAAGTATTTCTTCTATTAGAGAAA
TTTTATGAAGCAAGGAAGTGGGACATCAGATTTCAATCAATTAACAAATG
ATTTGGGTATGGAAGGATCTGGTTCAGGTGGTGACAAAAATACGGCCCAA
CTGAAGAAATAACTGAAGACATTTCAGAGGACGCCCTTCAAGTATCCAAT
GAAAATACCGCCTCTGTTTTACCCAATCAAGAGGACGCCCAAGTTGAGAC
GCCCGCTAACGCCCAACAAACGCCACAATTGATTCAAAATACAGAAGTGG
CATCAGAAGATGAAAGTGTAGGTGCGGATGGAGAACTACAAAAAGAACAA
GATGAAATTTTTGATTTTTCTTTTATTGGGCTTAGTTAGCTCTACATTGA
TCTGTGGATACGCTGTTATTGCAGGAAAATCAGGAAGAAGCACAAAAAGA
AAAAGAAAGCCCGTCACAAAATACCGAAGAAAAAGCTGTAAGTATTTCTT
CTATTAGAGAAATTTTATGAAGCAAGGAAGTGGGACATCAGATTTCAATC
AATTAACAAATGATTTGGGTATGGAAGGATCTGGTTCAGGTGGTGACAAA
AATACGGCCCAACTGAAGAAATAACTGAAGACATTTCAGAGGACGCCCTT
CAAGTATCCAATGAAAATACCGCCTCTGTTTTACCCAATCAAGAGGACGC
CCAAGTTGAGACGCCCGCTAACGCCCAACAAACGCCACAATTGATTCAAA
ATACAGAAGTGGCATCAGAAGATGAAAGTGTAGGTGCGGATGGAGAACTA
CAAAAAGAACAAGATGAAATTTTTGATTTTTCTTTTATTGGGCTTAGTTA
GCTCTACATTGATCTGTGGATACGCTGTTATTGCAGGAAAATCAGGAAGA
AGCACAAAAAGAAAAAGAAAGCCCGTCACAAAATACCGAAGAAAAAGCTG
TAAGTATTTCTTCTATTAGAGAAATTTTATGAAGCAAGGAAGTGGGACAT
CAGATTTCAATCAATTAACAAATGATTTGGGTATGGAAGGATCTGGTTCA
GGTGGTGACAAAAATACGGCCCAACTGAAGAAATAACTGAAGACATTTCA
GAGGACGCCCTTCAAGTATCCAATGAAAATACCGCCTCTGTTTTACCCAA
TCAAGAGGACGCCCAAGTTGAGACGCCCGCTAACGCCCAACAAACGCCAC
AATTGATTCAAAATACAGAAGTGGCATCAGAAGATGAAAGTGTAGGTGCG
GATGGAGAACTACAAAAAGAACAAGATGAAATTTTTGATTTTTCTTTTAT
TGGGCTTAGTTAGCTCTACATTGATCTGTGGATACGCTGTTATTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003114XLOC_003114Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005488-exon-sc0000053-1575043694:516434..516738TCONS_00005488-exon-sc0000053-1575043694:516434..516738Clytia hemisphaericaexon
TCONS_00005488-exon-sc0000053-1575043694:515610..515819TCONS_00005488-exon-sc0000053-1575043694:515610..515819Clytia hemisphaericaexon
TCONS_00005488-exon-sc0000053-1575043694:514052..514134TCONS_00005488-exon-sc0000053-1575043694:514052..514134Clytia hemisphaericaexon
TCONS_00005488-exon-sc0000053-1575043694:513595..513700TCONS_00005488-exon-sc0000053-1575043694:513595..513700Clytia hemisphaericaexon
TCONS_00005488-exon-sc0000053-1510915933:516434..516738TCONS_00005488-exon-sc0000053-1510915933:516434..516738Clytia hemisphaericaexon
TCONS_00005488-exon-sc0000053-1510915933:515610..515819TCONS_00005488-exon-sc0000053-1510915933:515610..515819Clytia hemisphaericaexon
TCONS_00005488-exon-sc0000053-1510915933:514052..514134TCONS_00005488-exon-sc0000053-1510915933:514052..514134Clytia hemisphaericaexon
TCONS_00005488-exon-sc0000053-1510915933:513595..513700TCONS_00005488-exon-sc0000053-1510915933:513595..513700Clytia hemisphaericaexon
TCONS_00005488-exon-sc0000053-1491911889:516434..516738TCONS_00005488-exon-sc0000053-1491911889:516434..516738Clytia hemisphaericaexon
TCONS_00005488-exon-sc0000053-1491911889:515610..515819TCONS_00005488-exon-sc0000053-1491911889:515610..515819Clytia hemisphaericaexon
TCONS_00005488-exon-sc0000053-1491911889:514052..514134TCONS_00005488-exon-sc0000053-1491911889:514052..514134Clytia hemisphaericaexon
TCONS_00005488-exon-sc0000053-1491911889:513595..513700TCONS_00005488-exon-sc0000053-1491911889:513595..513700Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005488-proteinTCONS_00005488-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:513595..516738 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.143344	0	0	0	0.773232	0.687395	97.859	100.672	55.1423	44.363	126.638	18.1387	1.95434	1.78209	11.8024	18.1251	75.8637	73.6218	1.14284	0.0797264	40.9544	37.5186	64.2631	53.7177	85.4159	96.5601	1.37588	0.419535	0	0.0810494
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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