TCONS_00005490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005490
Unique NameTCONS_00005490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length124

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005490 ID=TCONS_00005490|Name=TCONS_00005490|organism=Clytia hemisphaerica|type=transcript|length=124bp
GTTATCAACAGTTAACTTTGGCCGTGATTCCACTGGTCGAAAAAGCATGT
ACGCTTGCATCTGTGGTCAAACGGAGTAATAGTCCTAaagATCCTCGTTT
GTATAACCGAGTCAAGTCTAAGAA
Run BLAST on NCBI

transcript from alignment at sc0000053:560581..560932-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005490 ID=TCONS_00005490|Name=TCONS_00005490|organism=Clytia hemisphaerica|type=transcript|length=352bp|location=Sequence derived from alignment at sc0000053:560581..560932- (Clytia hemisphaerica)
GTTATCAACAGTTAACTTTGGCCGTGATTCCACTGGTCGAAAAAGCATGT
ACGCTTGCATCTGTGGTCAAACGGAGTAATAGTCCTAAAGGTATTTTTTT
TATATTTAAATCAGTTGTGTTGGAAATATGTATATATTTGGCAATCTTGC
ACCGCTAACGCCACTTTTTTTGTTTTACTGATGGATGTGATGGAACAATC
GTATCATTTTCATAAGTTGTATCCCCATTGTATCAGAAAGGTTCGATTTT
GTATGTTTTTATTATTCCCGTTTTTGAATACTTCCCAATGTCAAAATCTG
CTTCCTTTTGTTTCACAGATCCTCGTTTGTATAACCGAGTCAAGTCTAAG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003116XLOC_003116Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005490-exon-sc0000053-1575043694:560843..560932TCONS_00005490-exon-sc0000053-1575043694:560843..560932Clytia hemisphaericaexon
TCONS_00005490-exon-sc0000053-1575043694:560581..560614TCONS_00005490-exon-sc0000053-1575043694:560581..560614Clytia hemisphaericaexon
TCONS_00005490-exon-sc0000053-1510915933:560843..560932TCONS_00005490-exon-sc0000053-1510915933:560843..560932Clytia hemisphaericaexon
TCONS_00005490-exon-sc0000053-1510915933:560581..560614TCONS_00005490-exon-sc0000053-1510915933:560581..560614Clytia hemisphaericaexon
TCONS_00005490-exon-sc0000053-1491911889:560843..560932TCONS_00005490-exon-sc0000053-1491911889:560843..560932Clytia hemisphaericaexon
TCONS_00005490-exon-sc0000053-1491911889:560581..560614TCONS_00005490-exon-sc0000053-1491911889:560581..560614Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:560581..560932 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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