TCONS_00005492 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005492
Unique Name	TCONS_00005492
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3129

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000053:561560..565811-

transcript sequence

>TCONS_00005492 ID=TCONS_00005492|Name=TCONS_00005492|organism=Clytia hemisphaerica|type=transcript|length=3129bp
CAACATCTCGGTGTAGCAGCTGGGCAACCCTTAACCGAAGAACATTTAAA
AGTTTTCGAAACATTCGATGGTGGACGAGAATTACTCGTAGAAATCCGGG
AAAAACTCGGTCTTGAAGCCGATCAACCAATAAACGAGCATCATTTATTA
AAACTCGAAAGTGTTGAAGGTGGCCTTCTATTGGTCGAAAAGATTCGGCA
AAAGTTCGGATTTGCTACTGGTTATGCGACCGGCCGAATTTCATCTCATG
AGGGGAGCGTGGCTGGGCAATCTATTCTCGGTGGCGCTCAAAAACCTGGA
GCTGAAACGACCATTACCGATGAAATGCGGCAAAAACTCGGGTTAGGAGT
CGGTCAAACTCTAACTGCCGAACAATTACAAAAACTCGGCATCAGTCATA
CAGGCCTTTTGGCTGGTCAGCTTNTTAACGGATGAAATGCAACAAAAACT
TAACTTACAAACAAGCTCTGTCGTCGGGAGTGGACAGTCGTTGACCGACG
AAATTCGGCAACACCTCGGTGTAGCGGTAGGGCAGCCCTTAACCGAAGAA
CATTTAAAAGTTTTCGAAACACTCGATGGTGGACGAGAATTACTCGTAAA
AATTCGGGAAAAACTCGGTCTTGAAGTCAACCAACCAATAAACGAACAGC
ATTTATTAAAACTCGAAAGTGTTGAAGGTGGTCATATATTGGTCGAAAAG
ATTCGGCAAAAGTTCGGATTTGCAACTGGCTATGCAACTGGCCGCATTTC
AACAGAAAGAGTCGGGTCTTTGACGGGGGAGTCAATTTTCGGAGGTGCTG
TTCCAAAACTTGGAACTGGGACGATAGCCGACGAAATGCAACAAAAACTT
GGCATAGGAGTCGGCCAAACATTAATTAAAGAAATTCGGCAACATCTCGG
TGTAGCAGCTGGGCAACCCTTAACCGAAGAACATTTAAAAGTTTTCGAAA
CATTCGATGGTGGACGAGAATTACTCGTAGAAATCCGGGAAAAACTCGGC
CTTGAAGCCGATCAACCAATAAACGAGCATCATTTATTAAAACTCGAAAG
TGTTGAAGGTGGCCTTCTATTGGTCGAAAAGATTCGGCAAAAGTTCGGAT
TTGCTACTGGTTATGCGACTGGCCGAATTTCATCTCATGAGGGGAGCGTG
GCTGGGCAATCTATTCTCGGTGGCGCTCAAAAACCTGGAGCTGAAACGAC
CATTACCGATGAAATGCGGCAAAAACTCGGGTTAGGAGTCGGTCAAACTC
TAACTGCCGAACAATTACAAAAACTCGGCATCAGTCATACAGGTCTTTTG
GCTGGTCAGCTTGCTACAGGAGAACATTTGAATGCTGGAGGTGGTCAATC
AACCTTAGCAGGTCAGACTCTCGCATCAAAGCAAGCACTGGCCGACGAAA
TTAGACAAAAACCAGGTTTGGGCTCTACACAACCTTTAACAGAAGGCCAT
TTACAAAATCTCGGAATGGGAGATGATAAAGTAACAGAAGAACTTAAACT
AAAGCTTGGTCTTATATCTGGACAATCTTTAACTGGAAGTCATTTACAAA
AACTTGGTGTGGGCTCAGATCAATCATTGACTGAGAAAATTCGACTAAAA
CTCGGTCTTGAAGCAAGCCCAACAACAGACCCACAGCTCGGTCAAAATCT
AATGGACTACTCATTGCATAATACTGGGAGTAATGCTGTAAATTCTAAtg
gttttcttcaaaaaatatcaTCCGACCCAACTCTTACAATGAACATTAAA
AAGAAACTTCTTACAGAACTTTTAACAAATCCTTCTAGCCTATCCcctga
acaaaaaaaacaaatgttaTTACAACTAACGAATGGACACCCAAATGCGC
AGGGTCTATCGGCGAATCAAGAAAACTCTGTTCCGTGCCATCCACAGCCT
TGTAACCAACCTCTTAATGCAAACCTACAAGACATTATATCACAAATTAA
AACACAACCAACTCCCTGCCAACCCAATGCAGGTAGTCTAGAAACGTTAA
CTCCTACGAGGGCGCCTTGTAAACCAACAGGTAGCCCTTTAGCAGAAATG
TCTCAAAATAAATTGCCAGAAGAGCCTAGACTTCCAACAATGCCTGCAAT
ACCAAATCGGGGAGAAGAAGATTCCCCGATTATTTCGAATAATTTAATAG
ATAAAtgtaaacaacaacaaactaCTATTGGAGCAGTTGGGCGACCAAAT
CCGGTTCACCCAGTTAGTCCTTTACTTGACCCCGATAGTCCGTGTCGGTT
ACCGGGTTCATTAACCGGTGGAATGGATTTGATTCAATTGATGGAATTGA
AAGCAAGAGCTGCCGAGAGTGGTGAAGGTATGAAGTCATTTTTGAATGTA
TCCCTTTactatatgtgtagatatgtaaaaatcCATAAATCTACCATATT
AGTAGTTAAGGTATAAATACTATCCAGACAATCtaaaaagaatgacaaat
aactattaaatggcgacaaaaagaacgacaaaccttgaccctaactatca
aagaacgacatatttcaaaccctaaccctaactatcaaagaaagAAACGA
CATATTTTCACGTTATATTTTTCAGCGATCATAGATGGCCATTGTTTTAT
TGCAATTGATCTCGGGATCGCCATTGATACATCACGAGCTGCATACGAAA
ACTGGTCCCACATTCTTCCCTTCTTACAATCTCTCATCAAGCAATTCGAA
GTGGTCGGGAAATCCCGAATCGGAATAATAACATACAGTAATGAAGCCCG
AATTGAAATCCCGTTCGGAGGTATATTAGGCAGATCGGGTTTATTTAAAA
CAGAGACTACATATAAAGAGAGACTTTCACAGATTCAACCTAATCCGAAC
GGGTTTCAACGGAGAACCGATTTGGCTTTGAATAAAGCTATTGAGCTTTT
TTATAATGGTAGAAGACAGGTTCCAAAAGCATTGATTGTACTTGAACACG
GTGGCATTATCGGTCACGACCATACAGTCGATTGGCGAGCACTTCAACAA
GAGCCTGCTGATCGTTTGAGAAGTATCGGTGTCAACATTTTCACTGTCGG
CTTCACAAAACATGCTGACCCCGAAGAACTACAGTCATTGGCTGGTTCAG
AAAGTCACGTGATCTCTTTAGAAGGTAAG

Run BLAST on NCBI

transcript from alignment at sc0000053:561560..565811-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005492 ID=TCONS_00005492|Name=TCONS_00005492|organism=Clytia hemisphaerica|type=transcript|length=4252bp|location=Sequence derived from alignment at sc0000053:561560..565811- (Clytia hemisphaerica)
CAACATCTCGGTGTAGCAGCTGGGCAACCCTTAACCGAAGAACATTTAAA
AGTTTTCGAAACATTCGATGGTGGACGAGAATTACTCGTAGAAATCCGGG
AAAAACTCGGTCTTGAAGCCGATCAACCAATAAACGAGCATCATTTATTA
AAACTCGAAAGTGTTGAAGGTGGCCTTCTATTGGTCGAAAAGATTCGGCA
AAAGTTCGGATTTGCTACTGGTTATGCGACCGGCCGAATTTCATCTCATG
AGGGGAGCGTGGCTGGGCAATCTATTCTCGGTGGCGCTCAAAAACCTGGA
GCTGAAACGACCATTACCGATGAAATGCGGCAAAAACTCGGGTTAGGAGT
CGGTCAAACTCTAACTGCCGAACAATTACAAAAACTCGGCATCAGTCATA
CAGGCCTTTTGGCTGGTCAGCTTNTTAACGGATGAAATGCAACAAAAACT
TAACTTACAAACAAGCTCTGTCGTCGGGAGTGGACAGTCGTTGACCGACG
AAATTCGGCAACACCTCGGTGTAGCGGTAGGGCAGCCCTTAACCGAAGAA
CATTTAAAAGTTTTCGAAACACTCGATGGTGGACGAGAATTACTCGTAAA
AATTCGGGAAAAACTCGGTCTTGAAGTCAACCAACCAATAAACGAACAGC
ATTTATTAAAACTCGAAAGTGTTGAAGGTGGTCATATATTGGTCGAAAAG
ATTCGGCAAAAGTTCGGATTTGCAACTGGCTATGCAACTGGCCGCATTTC
AACAGAAAGAGTCGGGTCTTTGACGGGGGAGTCAATTTTCGGAGGTGCTG
TTCCAAAACTTGGAACTGGGACGATAGCCGACGAAATGCAACAAAAACTT
GGCATAGGAGTCGGCCAAACATTAATTAAAGAAATTCGGCAACATCTCGG
TGTAGCAGCTGGGCAACCCTTAACCGAAGAACATTTAAAAGTTTTCGAAA
CATTCGATGGTGGACGAGAATTACTCGTAGAAATCCGGGAAAAACTCGGC
CTTGAAGCCGATCAACCAATAAACGAGCATCATTTATTAAAACTCGAAAG
TGTTGAAGGTGGCCTTCTATTGGTCGAAAAGATTCGGCAAAAGTTCGGAT
TTGCTACTGGTTATGCGACTGGCCGAATTTCATCTCATGAGGGGAGCGTG
GCTGGGCAATCTATTCTCGGTGGCGCTCAAAAACCTGGAGCTGAAACGAC
CATTACCGATGAAATGCGGCAAAAACTCGGGTTAGGAGTCGGTCAAACTC
TAACTGCCGAACAATTACAAAAACTCGGCATCAGTCATACAGGTCTTTTG
GCTGGTCAGCTTGCTACAGGAGAACATTTGAATGCTGGAGGTGGTCAATC
AACCTTAGCAGGTCAGACTCTCGCATCAAAGCAAGCACTGGCCGACGAAA
TTAGACAAAAACCAGGTTTGGGCTCTACACAACCTTTAACAGAAGGCCAT
TTACAAAATCTCGGAATGGGAGATGATAAAGTAACAGAAGAACTTAAACT
AAAGCTTGGTCTTATATCTGGACAATCTTTAACTGGAAGTCATTTACAAA
AACTTGGTGTGGGCTCAGATCAATCATTGACTGAGAAAATTCGACTAAAA
CTCGGTCTTGAAGCAAGCCCAACAACAGACCCACAGCTCGGTCAAAATCT
AATGGACTACTCATTGCATAATACTGGGAGTAATGCTGTAAATTCTAATG
GTTTTCTTCAAAAAATATCATCCGACCCAACTCTTACAATGAACATTAAA
AAGAAACTTCTTACAGAACTTTTAACAAATCCTTCTAGCCTATCCCCTGA
ACAAAAAAAACAAATGTTATTACAACTAACGAATGGACACCCAAATGCGC
AGGGTCTATCGGCGAATCAAGAAAACTCTGTTCCGTGCCATCCACAGCCT
TGTAACCAACCTCTTAATGCAAACCTACAAGACATTATATCACAAATTAA
AACACAACCAACTCCCTGCCAACCCAATGCAGGTAGTCTAGAAACGTTAA
CTCCTACGAGGGCGCCTTGTAAACCAACAGGTAGCCCTTTAGCAGAAATG
TCTCAAAATAAATTGCCAGAAGAGCCTAGACTTCCAACAATGCCTGCAAT
ACCAAATCGGGGAGAAGAAGATTCCCCGATTATTTCGAATAATTTAATAG
ATAAATGTAAACAACAACAAACTACTATTGGAGCAGTTGGGCGACCAAAT
CCGGTTCACCCAGTTAGTCCTTTACTTGACCCCGATAGTCCGTGTCGGTT
ACCGGGTTCATTAACCGGTGGAATGGATTTGATTCAATTGATGGAATTGA
AAGCAAGAGCTGCCGAGAGTGGTGAAGGTATGAAGTCATTTTTGAATGTA
TCCCTTTACTATATGTGTAGATATGTAAAAATCCATAAATCTACCATATT
AGTAGTTAAGGTATAAATACTATCCAGACAATCTAAAAAGAATGACAAAT
AACTATTAAATGGCGACAAAAAGAACGACAAACCTTGACCCTAACTATCA
AAGAACGACATATTTCAAACCCTAACCCTAACTATCAAAGAAAGAAACGA
CATATTTTCACGTTATATTTTTCAGCGATCATAGATGGCCATTGTTTTAT
TGCAATTGATCTCGGGATCGCCATTGATACATCACGAGCTGCATACGAAA
ACTGGTCCCACATTCTTCCCTTCTTACAATCTCTCATCAAGCAATTCGAA
GTGGTCGGGAAATCCCGAATCGGAATAATAACATACAGTAATGAAGCCCG
AATTGAAATCCCGTTCGGAGGTATATTAGGCAGATCGGGTTTATTTAAAA
CAGAGACTACATATAAAGAGAGACTTTCACAGATTCAACCTAATCCGAAC
GGGTTTCAACGGAGAACCGATTTGGCTTTGAATAAAGCTATTGAGCTTTT
TTATAATGGTAGAAGACAGGTTCCAAAAGCATTGATTGTACTTGAACACG
GTGGCATTATCGGTAAGATGTTTTCATTTGTTTATTAGATGGTTTGAGAT
TTTTGGCCTGTATGCAGTTGTACTGAAGCTCCTTCGGTACACTTTAGTAC
CGCCCACCTAGCGCTCACTAAACACCCAATAGCGCCTTCAATGCTCCACT
GGGCAGTAACTTAGCGATTGCTGCTCAGCCCTCTGGATCTTTAACTTTAG
TGTAGTTTGAACAACAAAGCGGGCGGACCAGCTCCAGGACCTAAGTATGT
ACGTATCTTTTCTAATGTATTCAGAAATGTATAACCTTTGTACTCAATAA
TCCAGATTCTCGGAACTACACAGTTTTCCATTAATGTTTGCAAATAAGAT
CATAAGATTCTACTTCTCTGGGCTCCTAAGCCCGTCCCCTTCGTAGCCCG
GACTCACTCGTATACTGAGTTTGAGTTCGTTTGTTAGGCCAGCATCTGGA
CCAGGCTCCAGTACACGAGTTTTAATACACAGTATATCTTTTATGCATGA
CGCTTATGTTGGAATTATATTTTTTCTTTACTTTGGAGGATAGTTAAGAC
AAAGATTTTGAATCTTGTTATAAGGACTATAGAAGCTATCTACAGATATT
CAAAAACCTCCTACATGTTGGGTCTTTAGATAGACCTTAGCTTTTCTGTG
GGATGTGGCGTCTGGTGTGTTTATAAAGTCTGGTCAAACAGGGTCAAAGG
AAATTGGCAGTCCGCACATTTAGATACTTTGCAACTGAAGGAGAAAAGAC
GTTAGACCAAAAATAAATGTCTAATTAAAAATAGGAAATGGAAATAGGAA
ATAGGAAAGTTTCAAGCTAAAGATGCGACCGTAGTGCAGTGGTAGAGCAC
CCGCCTACGGTTTGCAAAGTTGTGGGTTCAACCCCCAGCCGGGTCATACC
AAAGATTCTCAAAATGGTACTTGATGCCTCTCTGCTTGATGCTCAGCAAT
TAAGGGAAGACTCTAGGGTAAGTGGAGAAATCCAGGGAGAAAGAGTGGTG
CCCTCCCCTACCTTCGGGTAGATTAGCTATCGAAAGAGGAGTCTTTGGAT
CGCCTCCGACTGCGGTCGCAGACTTACTTACTTAAAAACGTGTTAAAGAA
TCTAAGATTGACACGTGATTATCATAAATGTTTAGGTCACGACCATACAG
TCGATTGGCGAGCACTTCAACAAGAGCCTGCTGATCGTTTGAGAAGTATC
GGTGTCAACATTTTCACTGTCGGCTTCACAAAACATGCTGACCCCGAAGA
ACTACAGTCATTGGCTGGTTCAGAAAGTCACGTGATCTCTTTAGAAGGTA
AG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003117	XLOC_003117	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00005492-exon-sc0000053-1575043694:562850..565811	TCONS_00005492-exon-sc0000053-1575043694:562850..565811	Clytia hemisphaerica	exon
TCONS_00005492-exon-sc0000053-1575043694:561560..561726	TCONS_00005492-exon-sc0000053-1575043694:561560..561726	Clytia hemisphaerica	exon
TCONS_00005492-exon-sc0000053-1510915933:562850..565811	TCONS_00005492-exon-sc0000053-1510915933:562850..565811	Clytia hemisphaerica	exon
TCONS_00005492-exon-sc0000053-1510915933:561560..561726	TCONS_00005492-exon-sc0000053-1510915933:561560..561726	Clytia hemisphaerica	exon
TCONS_00005492-exon-sc0000053-1491911889:562850..565811	TCONS_00005492-exon-sc0000053-1491911889:562850..565811	Clytia hemisphaerica	exon
TCONS_00005492-exon-sc0000053-1491911889:561560..561726	TCONS_00005492-exon-sc0000053-1491911889:561560..561726	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000053	supercontig	sc0000053:561560..565811 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.091195	0.146992	0.216333	0.00387665	0.0973786	0.0197527	0.372582	0.440918	0.0867131	0.494519	0.242743	0.350091	0.231131	0	0.321927	0.447596	0	0.315436	0.0346203	0.367118	0.483954	0.298666	0.339582	0.105546	0	0	0.369087	0.0662619	0.136967	0.244956

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00005492 vs. Swiss-Prot (Human)

BLAST of TCONS_00005492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00005492 (transcript) - C. hemisphaerica