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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005498 ID=TCONS_00005498|Name=TCONS_00005498|organism=Clytia hemisphaerica|type=transcript|length=1795bpRun BLAST on NCBI protein sequence of TCONS_00005498-protein >TCONS_00005498-protein ID=TCONS_00005498-protein|Name=TCONS_00005498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp MSNINSWPILSFIPAEIAKNVIKAFVFGGAGNEAIIVVSNGDVYALGFNGRun BLAST on NCBI transcript from alignment at sc0000053:578136..650132- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005498 ID=TCONS_00005498|Name=TCONS_00005498|organism=Clytia hemisphaerica|type=transcript|length=71997bp|location=Sequence derived from alignment at sc0000053:578136..650132- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000053:578136..650132- >TCONS_00005498 ID=TCONS_00005498|Name=TCONS_00005498|organism=Clytia hemisphaerica|type=CDS|length=22344bp|location=Sequence derived from alignment at sc0000053:578136..650132- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005498 vs. Swiss-Prot (Human)
Match: RCBT1 (RCC1 and BTB domain-containing protein 1 OS=Homo sapiens GN=RCBTB1 PE=1 SV=1) HSP 1 Score: 514.998 bits (1325), Expect = 1.872e-176 Identity = 261/535 (48.79%), Postives = 356/535 (66.54%), Query Frame = 2
Query: 44 MSNINSWPILSFI-PAEIAKNVIKAFVFGGAGNEAIIVVSNGDVYALXXXXXXXXXXXXXXSTLEPRKIDILCQKNLVDFAYGMGPHILTVTESGELYSWGHGGYGQLGHVEDEXXXXXXXXXX----XXXXXIACGSYHSIALTQEGEIYAWGSNNCGQLGLGVGTNQQTPRKVNGQLSNYNKKVTSVACGQSFTIVLTDEGELYSWGYNGNGQLGIGNNTNQQQPAKVAGLNGKYIQKIACGMAHVLALTDTGELYSWGANSYGQLGLDTTLNTSTPTLVPTTEETARWTDIAAHHYNHISAAVLLSGKICMWGQCHGLTLLSPRQVAINSLDAVFACFGMPQIMFRFTEIDHEEPQTLKDTVKRAFDDATSSDLAFVIDGKSIHVHKALLKIRCEYFRNMLQTHWEESNMSEIEVTQFSYDVYRAFLLFLYTDKVDIGSEDAISLLHLADSYCEQRLKEICEDLIKKSVSISNVSHLLAAAIKYNASDLEEFCFRFSMNHLTAVTQTETFKQLDGDTVRDFIIKAGASGAFK 1633
M ++ WPI + + P EIA ++ KA VFG + +EA+ V N +V+ G N + CLG G+ STL P+K++ LC K + +YG GPH+L TE G +Y+WGH GY QLG+ + + K+VV++ACGS+HS+AL +GE++AWG NNCGQ+G G NQ TPRKV L + K+V +ACGQ+ ++ + D GE+Y WGYNGNGQLG+GNN NQ P +VA L+ + +I CG AH LALTD G LY+WGAN+YGQLG N +P + +E R +IAA H H SAA G + MWGQC G +++ P + D VFACF P + +R ++HE+ T+ +++K+ FD ++DL F IDGK IHVHKA+LKIRCE+FR+M Q++W E IE+ QFSY VYRAFL +LYTD VD+ EDAI LL LA SYCE RLK++C+ +IK+ +++ N L +AA++Y+A DLEEFCF+F +NHLT VTQT F Q+DG +++FI KA GAFK
Sbjct: 1 MVDVGKWPIFTLLSPQEIA-SIRKACVFGTSASEALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLCGKKIKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCL--HIKRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEKE--RVVEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVSWRLLSVEHEDFLTVAESLKKEFDSPETADLKFRIDGKYIHVHKAVLKIRCEHFRSMFQSYWNEDMKEVIEIDQFSYPVYRAFLQYLYTDTVDLPPEDAIGLLDLATSYCENRLKKLCQHIIKRGITVENAFSLFSAAVRYDAEDLEEFCFKFCINHLTEVTQTAAFWQMDGPLLKEFIAKASKCGAFK 530 The following BLAST results are available for this feature:
BLAST of TCONS_00005498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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