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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005500 ID=TCONS_00005500|Name=TCONS_00005500|organism=Clytia hemisphaerica|type=transcript|length=1153bp
caaaaattatatttgaagTCTTTCTCCTGtacaatgttttttcttttatg
ttCATaacatttttcacaaaataatCGTTTAAAATGtgtgaaagatgaaa
aaattcaacaaaaaatatatataagagCTAAGCAAACTATGTGAGCACAt
tctaaaatctgaaaatttttttctctaaatacgaagatgaaaatttataa
aaaagggtTGTAAATGGGCCCGAAAACTGGAATACAATCTTGTTATCACT
TTTCATTTACCTTAAGAATTCATACAACCAGCTGAATAAATGTGTCGGTA
CTCCCAATTCCAAAACAACCCTAACCTTAGGGGGAGGAAgtatagaaata
tttttcctcTGCAAGTTGAACCTGACTGAACATATATGGACTTTCTACTT
CACTGAAAAATCTTTCTACCAGCAAAAcaaaaagatctttcaaatGCATT
CCGTGAAGtttggtaacttgcatcagtggaggaaaCTTGCATtcccctca
aatgaatgacctgtctggtcattaaaatacaaagttaaatcaaaacaaaa
tggtagagtagagctgcgagcggaattgcgtagttcatttgttttgaagt
tttgctgctttgattggtcggccatttgatggctatgcaagtttccctcc
actgatgcaagttacccgactacACGGTAATATCTCTCAAATGCAGGTAC
CAATACCATATAAATTTCTACATtcactgggggggggggttgaattCGGA
CAGTCAAACAGTCttcgtttcaaaaattttatgtttaCATTATTCAAATA
TTAGTgagtttcattttttgagtacTCAGTAAGATTTTTTAACGAAATTG
TCGGAGGAAAGTGTCCCAAGATCAGTTAGAACGCCATGCCATAACCATAT
ATACAATTTGTTTTGCTGGAGAAATAATTCCATTATTGAGTTGTACCAAC
CAAATCAAGATCACTAATGCGCATGCCTCAACGCTACCACGAATGCGCTA
TATCTAACAGACAAGCCAACATTTTCACAGCCAAGGTCAAAACATTAACC
GCCAACGCGTCTTTGTGTCTCGAACCAAACGATTTTTTGTTGAATGTTAG
TCGCCAACACACATAAAATGTTTGTATTATGCAAGATACGTGTATACTTT
CCT Run BLAST on NCBI transcript from alignment at sc0000053:676660..677896- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005500 ID=TCONS_00005500|Name=TCONS_00005500|organism=Clytia hemisphaerica|type=transcript|length=1237bp|location=Sequence derived from alignment at sc0000053:676660..677896- (Clytia hemisphaerica)
CAAAAATTATATTTGAAGTCTTTCTCCTGTACAATGTTTTTTCTTTTATG
TTCATAACATTTTTCACAAAATAATCGTTTAAAATGTGTGAAAGATGAAA
AAATTCAACAAAAAATATATATAAGAGCTAAGCAAACTATGTGAGCACAT
TCTAAAATCTGAAAATTTTTTTCTCTAAATACGAAGATGAAAATTTATAA
AAAAGGGTTGTAAATGGGCCCGAAAACTGGAATACAATCTTGTTATCACT
TTTCATTTACCTTAAGAATTCATACAACCAGCTGAATAAATGTGTCGGTA
CTCCCAATTCCAAAACAACCCTAACCTTAGGGGGAGGCCTGAAAAACCCG
AATTATGAAAACCTATGAAAAAACTGAGTTATGGCGTCATAACTCGGGTT
TTCCAGGCCTCCCTTAGGAGGAAGTATAGAAATATTTTTCCTCTGCAAGT
TGAACCTGACTGAACATATATGGACTTTCTACTTCACTGAAAAATCTTTC
TACCAGCAAAACAAAAAGATCTTTCAAATGCATTCCGTGAAGTTTGGTAA
CTTGCATCAGTGGAGGAAACTTGCATTCCCCTCAAATGAATGACCTGTCT
GGTCATTAAAATACAAAGTTAAATCAAAACAAAATGGTAGAGTAGAGCTG
CGAGCGGAATTGCGTAGTTCATTTGTTTTGAAGTTTTGCTGCTTTGATTG
GTCGGCCATTTGATGGCTATGCAAGTTTCCCTCCACTGATGCAAGTTACC
CGACTACACGGTAATATCTCTCAAATGCAGGTACCAATACCATATAAATT
TCTACATTCACTGGGGGGGGGGGTTGAATTCGGACAGTCAAACAGTCTTC
GTTTCAAAAATTTTATGTTTACATTATTCAAATATTAGTGAGTTTCATTT
TTTGAGTACTCAGTAAGATTTTTTAACGAAATTGTCGGAGGAAAGTGTCC
CAAGATCAGTTAGAACGCCATGCCATAACCATATATACAATTTGTTTTGC
TGGAGAAATAATTCCATTATTGAGTTGTACCAACCAAATCAAGATCACTA
ATGCGCATGCCTCAACGCTACCACGAATGCGCTATATCTAACAGACAAGC
CAACATTTTCACAGCCAAGGTCAAAACATTAACCGCCAACGCGTCTTTGT
GTCTCGAACCAAACGATTTTTTGTTGAATGTTAGTCGCCAACACACATAA
AATGTTTGTATTATGCAAGATACGTGTATACTTTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005500-exon-sc0000053-1575043694:677561..677896 | TCONS_00005500-exon-sc0000053-1575043694:677561..677896 | Clytia hemisphaerica | exon |
| TCONS_00005500-exon-sc0000053-1575043694:676660..677476 | TCONS_00005500-exon-sc0000053-1575043694:676660..677476 | Clytia hemisphaerica | exon |
| TCONS_00005500-exon-sc0000053-1510915933:677561..677896 | TCONS_00005500-exon-sc0000053-1510915933:677561..677896 | Clytia hemisphaerica | exon |
| TCONS_00005500-exon-sc0000053-1510915933:676660..677476 | TCONS_00005500-exon-sc0000053-1510915933:676660..677476 | Clytia hemisphaerica | exon |
| TCONS_00005500-exon-sc0000053-1491911889:677561..677896 | TCONS_00005500-exon-sc0000053-1491911889:677561..677896 | Clytia hemisphaerica | exon |
| TCONS_00005500-exon-sc0000053-1491911889:676660..677476 | TCONS_00005500-exon-sc0000053-1491911889:676660..677476 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:676660..677896 - |
Blast
The following BLAST results are available for this feature:
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