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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005504 ID=TCONS_00005504|Name=TCONS_00005504|organism=Clytia hemisphaerica|type=transcript|length=1754bp
aaacttttttatgtgaTGCTTTATTTGTTCTCAGAGTTGAAGACTATTGA
GAAGGAAAAATTGTCAAGAAATAGTTAGAGTTGGTAAAAAAATAACTAAT
TCACACCGTAAAGCTAATATCGAGTATAGGTCTGTGTCAATTTTGCTACA
TATTGTGGTGACAAATAGATACTATGTGACAGGACAGTATCTggtagaaa
acgaaagtatacTATTCAAGGAAAAATTGATACAAGTGTGaaataaacag
ttttttttttggattttttggatAGGGATTTAGAATAGTTTTAAAGATGG
CGCAAGATTTACGAGAAGATTTTGGGAGACGTAAACGAGTCAAAAGAACG
ACCAATTTCATTGGCTTCTCATCAGTGgtTGACGCAATCCTATCGGCAGC
ATTGATCGTTCTCCTTCTACAACAAGAAGAATTACGAGATATACCTATCC
TAGTAGCCTGCATACAACTCACAAATCACGAATTTCTTGTTCTCATATCA
TCTGTCATTTTATTACGAACGGGCGACCGTTACTACGACCGCATAGACGC
ATGCGGGGCCTGGATGATCATTCATTTTCTCGTTGCTATTGGCAACGCAT
CTTTACTAACATTCGAAATAATGGATGATTATTACGTCATCATAAATGCt
tctattttaaagaaaatcttctTAGCTTGGAAGGCCTACTTtcttttact
tcaaatttttgGTATGATTTATTGTTATTTAGTGGTACATAAACCAATAG
CTTATATCAAAGAAAAACCAAAGCGGACACCTCACCCTTTATTCACCGAA
ACGAACACAACTGAGAGTGTATTACCTCCGGAAAATCGTACTTTACAAAC
AGATGCTAGTGGGACGGCCCGACCTTCTGTTGTCACTAGACGGCCCGTAA
GTGCCGTTTATCCTGAAAGCAATAACGCGAAAGATCGACAGTTCAGAAGT
AACGCTTTAGCAGGACAACTCGTAAATCACGGATACAATCGTAATTCGTG
TTATGAATCGTATCAATCTCTTACGAGTACAGGACCAAACGATTCGCAAT
TGAGATATACGCGTAACCCAGCTTTCGAATCTGAATTATCTTTAGACTAC
GCGAATAATTATTCGCCTTATGATCATATGATGATGAGCAATCGTAACAG
GTTATCTTACGTTGAACCGATACGTGAAGCGACGGAACAGAACATTGATT
ACGGAACGATaggaaaatgttgaaaaacgtaagaaagttttttgtcaGGT
TTTAGTCGTCGAGCACAAAGTAGTTTTTTCGGAAATTTCTTTCGTTGTTT
TTGAATGCGTTTGAATGTGATTTCTATGGGGAtaagaaaacataaaaatt
gtTTCCAGCATATCAATATCACGGACTTATTTAAAACCGAAGTAAATTGA
AGAACGGGATGTAATATGTTAAAGTCTggtatacccctgtctcaagtgCC
GAGGGAGGGGACGTCACCCGGGCAAAGACGCAAGAATGTTCCGGTTACAC
AACAATTTTCTTATATTATCCAAGGCCGTGTCAAGCAGAATCTAATTTCA
TCAATGTAAATACTTCCATAATTctaattctgttttgaattttatgagac
tttgtgtTGACGGACAAGATTGACGCGTCTCGATTAGAGTTCTGTCAAAA
GGCATTAAAACCATTGTAAATAGTATAAAATTTTATATCAGTTTTAAAAT
CATTAGGTTAGAAGgtgttacaaaaaatatttttgaagaaaaatgaaact
tgaa Run BLAST on NCBI protein sequence of TCONS_00005504-protein >TCONS_00005504-protein ID=TCONS_00005504-protein|Name=TCONS_00005504-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MAQDLREDFGRRKRVKRTTNFIGFSSVVDAILSAALIVLLLQQEELRDIP
ILVACIQLTNHEFLVLISSVILLRTGDRYYDRIDACGAWMIIHFLVAIGN
ASLLTFEIMDDYYVIINASILKKIFLAWKAYFLLLQIFGMIYCYLVVHKP
IAYIKEKPKRTPHPLFTETNTTESVLPPENRTLQTDASGTARPSVVTRRP
VSAVYPESNNAKDRQFRSNALAGQLVNHGYNRNSCYESYQSLTSTGPNDS
QLRYTRNPAFESELSLDYANNYSPYDHMMMSNRNRLSYVEPIREATEQNI
DYGTIGKC Run BLAST on NCBI transcript from alignment at sc0000053:769664..774581- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005504 ID=TCONS_00005504|Name=TCONS_00005504|organism=Clytia hemisphaerica|type=transcript|length=4918bp|location=Sequence derived from alignment at sc0000053:769664..774581- (Clytia hemisphaerica)
AAACTTTTTTATGTGATGCTTTATTTGTTCTCAGAGTTGAAGACTATTGA
GAAGGAAAAATTGTCAAGAAATAGTTAGAGTTGGTAAAAAAATAACTAAT
TCACACCGTAAAGCTAATATCGAGTATAGGTCTGTGTCAATTTTGCTACA
TATTGTGGTGACAAATAGATACTATGTGACAGGACAGTATCTGGTAGAAA
ACGAAAGTATACTATTCAAGGAAAAATTGATACAAGTGTGAAATAAACAG
TTTTTTTTTTGGATTTTTTGGATAGGGATTTAGAATAGTTTTAAAGATGG
CGCAAGATTTACGAGAAGATTTTGGGAGACGTAAACGAGTCAAAAGAACG
ACCAATTTCATTGGCTTCTCATCAGTGGTAAGTGTTGGCCTCACCATTTT
TTATCAAAATATACTTTTTTATCAATTTCGAAATTTGACTAATTTTAGCC
TTCACTCCCTCTACTTTTACGGTTTTTACATCTTCTTGAAACAATCCCGT
CGTTTTATAGATAGACTTTGTGTGCCATCAATAAATAGGTTGGGAAGATA
TTTTGCACACTAAAAGCCTCACCGCTGCGCTTGCCAAAGTTTGGAAATGC
TTATATATTATTTCGCATTGTTCACTTCAATCTTAATTTCAGAATACTAC
GGTGAATTGGATGCACTTAACAAAAATATGGTGCGCTACTCAACTATACA
CGCTCAGCTCAGGGTATCTACCAACACGACAGAAAAATGCTGTAAAGTGG
AGAAGCTTAAAGCTAGAATAAAAAAATATATTCATAGAAAAATTGCAGAA
AAGCGTATTTTGCTGAGTTGAAGATGCTTTTTTATCAAAAAAGAACGAGA
TAAAATGTTATCTTATCTTGGGAAATCAGACTATAGCGTTAAGATATGTA
CATACAAGGATAGATTACCAAACATTATGAAAATAACTTGCTAATGCTTG
AAATAACATTATTTCATAAAAATGACGTCATTCTCATGTCGTATGATGCT
TATTCATTTTTATATGCTTAGTCAAGAAGCAAAATCATCATTTCAATGCA
AAAAAAATTGGCCATAATCTACTAAACTGTTTTAGATTAGGTTACGGCAT
ATCCGAATTATGTTTGTACAGTCAAAGGTCGTGTTCAGACCAAGGTTTAA
AGCAATTAGGTTTACATGTTTCTTTTATATTCCTTTTGTATTTAACGGCA
CGCTTCTCATTAGTTAAACCAAAGTTTAAAAAGGAATCACCCTCTGGTTT
AAAAAAAAAGTTTTTACGATTTCATTACAGTTTTCTGAATAGATGAAATC
AGAATTCGCAAGTAAAAAGCATGCTCCTTTTGTAAATGAAGAAAAAAGAA
CGTGAAATTTACGACTTAGAGACGCTCGGAGCATCTCTAGCAGTAATGGC
TTCAACGAACACGAATTAGTGTTTTGCAGAGGGATTCCCTGAAATCTTTT
TTGTTTCAAAGTATCTCAAGAGAGAAGATGACATGATTTCAAGTTAGGAA
AGGAGATTCCTCGAGATCGCCAATAGATGATGACAAAAGAAAAGTGATTA
TAATTGAATTCCCATATCAACAAAGTACTACTTAAACCTTAAACTTTAAA
CTTTCAGGTCTGAACACGACCAATCTGACAACTATGCTTCACATTAATTT
CAATAGGATTCGTTTCTCGAAAGTCTATTTGCCAATATTTAGTTTTTTTT
CAGCTATCTAGTTATTTTCTTCATAGTGGAAATGATAATTCAGTAGGATT
TCTTAGTGGGATAAAAACCCTTACCAGGGTTTCTTGCTTTCAATCAAGAA
ATGATTAATATTTTGAGCAGTACAACGTTTTCTTATAAGAAAAAAACTAT
ATAAGAACACAAGGCTTCGATGGCGAAAATATTAAGAACAAGTTAAGAAC
ATTTTAAGGCTTTGCGGACTCGAAAACACCCGATATCTTAGGAAAATGGG
TAAAAATCGTGAAGATAAGAACATGTTAACAACCTTATTTAGGCTTAAAA
ATGAAAAGTTAAGAACATCCGAAGGCTCCAAAGATTTTGAAAGTTCTTAT
AAAAAAACGTGTATGAGGCTTATTTCCCTGAATTGACTCACGAAACTGTG
AATGTACCACAAGGTCAGAGAAAATTTTGAGAATCAGGTACTCTACCCTA
GAAAAAGGTATTCTGTTGTTACATGCACGAATATCAAATTTCCTGAATTA
TCGGCAAATTGAAAAAAGGTCACTGAGCTTTCCTGGTCTTTTATTAGTTC
ATCAGACATCTATAAATATGCTTCCTATAGGAAGGTGGGAGAATGAATGA
GAAGGACAACCCCTTCTCACAAACACGGTAGGGCTTTTCAGTCAGCGGCG
GTAAAATAACGGACTTAAACTCGGTGGGGATTGATATTCACATATGGCTT
GGGATTCAAATTCCAGGAAAGNCCCATATTTTTTATGACAGGGGATTCAA
ATTCCATTGTATTCAAGTCAGAAAATTCAGTAGGGATAGGAAAAAAAGCA
TAATACTTTGCAGTGAAGATTGTTTTATTTGATTATTTTCAGTGGGGACA
AAAATTGGAGGATAATTTTCCACTAGGGACGATATTTTGGCCAATTTTTC
CAGTGGGAAGGGGTCCCAGTGGCTGTAAGAAGGGGGTGCAGTAGAATTCT
ACTTTTCCACGAGTTTTTTTTCTTTAAGTCTTTATTTTCGAGATTTACCA
TAAGGTCTGTCAAACCACGTTAATGTAATACTGCTTTTTGCTAGAAAATA
AAAGTAGCATAAAAACATCACAAAAAGGAAAACAGAAACCGGAGCTTTCA
AAATTTAAGATTCTGTTGAATGAAGTGTTTTAAGATGGTATCAATAGGTC
TGCATCTTCTCAAAGTTCCTCTTATTAATAACTCGCATCGCTAAACATTG
TTCACAAAGTCATATGAATCTAACTCGCTAAAAATATTGGCAATCTGTGA
ATCTGCGATGATTATTCTTTGAAAAATCAATACAGGCAACAAGGTTTAAC
CCCGGTTTACCCTATTTCATTGTCTATGTTTCATGATATAACATAAAAAA
AACAACGCAATTACAAAACTTCGAAGTAAGTTGCCTCATGCTGCTTACAA
AAAAAGTTTCTTCTTAAGGATGTCATAAGAGAAACGTGAGAACAAATTTA
CATTTTTTGGTAAAAATGACCACTGATATTGCATAACCATGCAACTAGCT
GCGGTCACACGCACAGTGAATCAAGTAACGCCACGCAAAGCAAAAGGATG
ATCGTTTTACTTATGTAACCTCGAGCGCACCATTTTAAGTGTGTTTTTCT
GGATAAACAAACAACTGATTTGCATAACACTACAAAAAGTAGTTCAAAAA
TTCACCATCAACCAAAATGCTGGCCCTCAAAAATTGAACCCTAACCTAAA
TGGGTAAAAACCTTTCATTCAAGCTTGAGAGGGTGGATTAGGAACAACCT
TTTAAATTTTTTAGACCCCATGATTCAAAACTTGTAATCTGGAGTAATAG
TAATAGTTTAGAAAACTCGAATCTTTATTTTCTTTTTCTAGGTTGACGCA
ATCCTATCGGCAGCATTGATCGTTCTCCTTCTACAACAAGAAGAATTACG
AGATATACCTATCCTAGTAGCCTGCATACAACTCACAAATCACGAATTTC
TTGTTCTCATATCATCTGTCATTTTATTACGAACGGGCGACCGTTACTAC
GACCGCATAGACGCATGCGGGGCCTGGATGATCATTCATTTTCTCGTTGC
TATTGGCAACGCATCTTTACTAACATTCGAAATAATGGATGATTATTACG
TCATCATAAATGCTTCTATTTTAAAGAAAATCTTCTTAGCTTGGAAGGCC
TACTTTCTTTTACTTCAAATTTTTGGTATGATTTATTGTTATTTAGTGGT
ACATAAACCAATAGCTTATATCAAAGAAAAACCAAAGCGGACACCTCACC
CTTTATTCACCGAAACGAACACAACTGAGAGTGTATTACCTCCGGAAAAT
CGTACTTTACAAACAGATGCTAGTGGGACGGCCCGACCTTCTGTTGTCAC
TAGACGGCCCGTAAGTGCCGTTTATCCTGAAAGCAATAACGCGAAAGATC
GACAGTTCAGAAGTAACGCTTTAGCAGGACAACTCGTAAATCACGGATAC
AATCGTAATTCGTGTTATGAATCGTATCAATCTCTTACGAGTACAGGACC
AAACGATTCGCAATTGAGATATACGCGTAACCCAGCTTTCGAATCTGAAT
TATCTTTAGACTACGCGAATAATTATTCGCCTTATGATCATATGATGATG
AGCAATCGTAACAGGTTATCTTACGTTGAACCGATACGTGAAGCGACGGA
ACAGAACATTGATTACGGAACGATAGGAAAATGTTGAAAAACGTAAGAAA
GTTTTTTGTCAGGTTTTAGTCGTCGAGCACAAAGTAGTTTTTTCGGAAAT
TTCTTTCGTTGTTTTTGAATGCGTTTGAATGTGATTTCTATGGGGATAAG
AAAACATAAAAATTGTTTCCAGCATATCAATATCACGGACTTATTTAAAA
CCGAAGTAAATTGAAGAACGGGATGTAATATGTTAAAGTCTGGTATACCC
CTGTCTCAAGTGCCGAGGGAGGGGACGTCACCCGGGCAAAGACGCAAGAA
TGTTCCGGTTACACAACAATTTTCTTATATTATCCAAGGCCGTGTCAAGC
AGAATCTAATTTCATCAATGTAAATACTTCCATAATTCTAATTCTGTTTT
GAATTTTATGAGACTTTGTGTTGACGGACAAGATTGACGCGTCTCGATTA
GAGTTCTGTCAAAAGGCATTAAAACCATTGTAAATAGTATAAAATTTTAT
ATCAGTTTTAAAATCATTAGGTTAGAAGGTGTTACAAAAAATATTTTTGA
AGAAAAATGAAACTTGAA Coding sequence (CDS) from alignment at sc0000053:769664..774581- >TCONS_00005504 ID=TCONS_00005504|Name=TCONS_00005504|organism=Clytia hemisphaerica|type=CDS|length=1854bp|location=Sequence derived from alignment at sc0000053:769664..774581- (Clytia hemisphaerica)
GTTGACGCAATCCTATCGGCAGCATTGATCGTTCTCCTTCTACAACAAGA
AGAATTACGAGATATACCTATCCTAGTAGCCTGCATACAACTCACAAATC
ACGAATTTCTTGTTCTCATATCATCTGTCATTTTATTACGAACGGGCGAC
CGTTACTACGACCGCATAGACGCATGCGGGGCCTGGATGATCATTCATTT
TCTCGTTGCTATTGGCAACGCATCTTTACTAACATTCGAAATAATGGATG
ATTATTACGTCATCATAAATGCTTCTATTTTAAAGAAAATCTTCTTAGCT
TGGAAGGCCTACTTTCTTTTACTTCAAATTTTTGGTATGATTTATTGTTA
TTTAGTGGTACATAAACCAATAGCTTATATCAAAGAAAAACCAAAGCGGA
CACCTCACCCTTTATTCACCGAAACGAACACAACTGAGAGTGTATTACCT
CCGGAAAATCGTACTTTACAAACAGATGCTAGTGGGACGGCCCGACCTTC
TGTTGTCACTAGACGGCCCGTAAGTGCCGTTTATCCTGAAAGCAATAACG
CGAAAGATCGACAGTTCAGAAGTAACGCTTTAGCAGGACAACTCGTAAAT
CACGGATACAATCGTAATTCGTGTTATGAATCGTATCAATCTCTTACGAG
TACAGGACCAAACGATTCGCAATTGAGATATACGCGTAACCCAGCTTTCG
AATCTGAATTATCTTTAGACTACGCGAATAATTATTCGCCTTATGATCAT
ATGATGATGAGCAATCGTAACAGGTTATCTTACGTTGAACCGATACGTGA
AGCGACGGAACAGAACATTGATTACGGAACGATAGGAAAATGTTGAATGG
CGCAAGATTTACGAGAAGATTTTGGGAGACGTAAACGAGTCAAAAGAACG
ACCAATTTCATTGGCTTCTCATCAGTGGTTGACGCAATCCTATCGGCAGC
ATTGATCGTTCTCCTTCTACAACAAGAAGAATTACGAGATATACCTATCC
TAGTAGCCTGCATACAACTCACAAATCACGAATTTCTTGTTCTCATATCA
TCTGTCATTTTATTACGAACGGGCGACCGTTACTACGACCGCATAGACGC
ATGCGGGGCCTGGATGATCATTCATTTTCTCGTTGCTATTGGCAACGCAT
CTTTACTAACATTCGAAATAATGGATGATTATTACGTCATCATAAATGCT
TCTATTTTAAAGAAAATCTTCTTAGCTTGGAAGGCCTACTTTCTTTTACT
TCAAATTTTTGGTATGATTTATTGTTATTTAGTGGTACATAAACCAATAG
CTTATATCAAAGAAAAACCAAAGCGGACACCTCACCCTTTATTCACCGAA
ACGAACACAACTGAGAGTGTATTACCTCCGGAAAATCGTACTTTACAAAC
AGATGCTAGTGGGACGGCCCGACCTTCTGTTGTCACTAGACGGCCCGTAA
GTGCCGTTTATCCTGAAAGCAATAACGCGAAAGATCGACAGTTCAGAAGT
AACGCTTTAGCAGGACAACTCGTAAATCACGGATACAATCGTAATTCGTG
TTATGAATCGTATCAATCTCTTACGAGTACAGGACCAAACGATTCGCAAT
TGAGATATACGCGTAACCCAGCTTTCGAATCTGAATTATCTTTAGACTAC
GCGAATAATTATTCGCCTTATGATCATATGATGATGAGCAATCGTAACAG
GTTATCTTACGTTGAACCGATACGTGAAGCGACGGAACAGAACATTGATT
ACGGAACGATAGGAAAATGTTGAATGGCGCAAGATTTACGAGAAGATTTT
GGGAGACGTAAACGAGTCAAAAGAACGACCAATTTCATTGGCTTCTCATC
AGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005504-exon-sc0000053-1575043694:774205..774581 | TCONS_00005504-exon-sc0000053-1575043694:774205..774581 | Clytia hemisphaerica | exon |
| TCONS_00005504-exon-sc0000053-1575043694:769664..771040 | TCONS_00005504-exon-sc0000053-1575043694:769664..771040 | Clytia hemisphaerica | exon |
| TCONS_00005504-exon-sc0000053-1510915933:774205..774581 | TCONS_00005504-exon-sc0000053-1510915933:774205..774581 | Clytia hemisphaerica | exon |
| TCONS_00005504-exon-sc0000053-1510915933:769664..771040 | TCONS_00005504-exon-sc0000053-1510915933:769664..771040 | Clytia hemisphaerica | exon |
| TCONS_00005504-exon-sc0000053-1491911889:774205..774581 | TCONS_00005504-exon-sc0000053-1491911889:774205..774581 | Clytia hemisphaerica | exon |
| TCONS_00005504-exon-sc0000053-1491911889:769664..771040 | TCONS_00005504-exon-sc0000053-1491911889:769664..771040 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:769664..774581 - |
Blast
The following BLAST results are available for this feature:
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