TCONS_00005519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005519
Unique NameTCONS_00005519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005519 ID=TCONS_00005519|Name=TCONS_00005519|organism=Clytia hemisphaerica|type=transcript|length=268bp
GTTATACTTTACATGTTTCTTACAAATGTTAACAATTTATTCTTGGATTA
AAGACAATAATAAAGAAATATAATGGTATTATTTATTACTATTTAATTAA
TAAtagaatatatttttgataagtTTCTATATACTATtgtgaacaaaaaa
aataacttttaaggTGGGACTGAGCTAAATATTTCTGTGTTTCTATTCTT
TCCATaaatttttttggacttttcaagaaaatatttacccTCTTTTGATA
ATGCATATCCAGGGGATT
Run BLAST on NCBI

transcript from alignment at sc0000053:407140..407407

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005519 ID=TCONS_00005519|Name=TCONS_00005519|organism=Clytia hemisphaerica|type=transcript|length=268bp|location=Sequence derived from alignment at sc0000053:407140..407407 (Clytia hemisphaerica)
AATCCCCTGGATATGCATTATCAAAAGAgggtaaatattttcttgaaaag
tccaaaaaaatttATGGAAAGAATAGAAACACAGAAATATTTAGCTCAGT
CCCAccttaaaagttattttttttgttcacaATAGTATATAGAAacttat
caaaaatatattctaTTATTAATTAAATAGTAATAAATAATACCATTATA
TTTCTTTATTATTGTCTTTAATCCAAGAATAAATTGTTAACATTTGTAAG
AAACATGTAAAGTATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003137XLOC_003137Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005519-exon-sc0000053-1491911889:407140..407407TCONS_00005519-exon-sc0000053-1491911889:407140..407407Clytia hemisphaericaexon
TCONS_00005519-exon-sc0000053-1510915933:407140..407407TCONS_00005519-exon-sc0000053-1510915933:407140..407407Clytia hemisphaericaexon
TCONS_00005519-exon-sc0000053-1575043694:407140..407407TCONS_00005519-exon-sc0000053-1575043694:407140..407407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:407140..407407 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.583184	0	0	0	3.14583	0.621468	2.24933	2.10579	3.44007	3.04363	0	1.55359	1.55143	0.805588	0	0.355376	1.75118	3.5898	0	0.64872	1.69157	1.65017	4.68067	1.82375	3.1307	2.23526	4.79797	3.41368	5.8256	0.659485
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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