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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005524 ID=TCONS_00005524|Name=TCONS_00005524|organism=Clytia hemisphaerica|type=transcript|length=2756bp
gtacataaaaacaaatgaaaaatcgTTAAGAACCAAAATACTAAAATGAT
AAAGGTGAAAACGTGATAAACTTTGGTAAATTTGGCAGAAGAATTACCGA
TAATCTgtcccttttttattttgaaaatcatttttgaaagtaTAGTTCTT
AGGTGTCAAGGtaaatttcaaatgaaatttattgaaaaaatctcaaaata
acaCGGTCTCCACGCCAGaaatttcaaaacctttttgtaaaaatgtaaTA
AGATgtcagttttcttaaaaatattccCGAATACCTACATTATATGTTTC
GGATTTTAGTATTGACCTCTTGACTATCTTAGAAATAAAATactagaaaa
tattttcaatgtcaTTTACAAACACGTAGGAAAGACtatcaaaatttctc
aaaatgaaatcatatacagaaaaaaatatatctcaagaaaactcaaaaag
tggTATCATGAAAACTTTTATGTCGAAACAATTTTGCTAAATCTTCACTC
ATTTGAACTGGGGaatcactttgttttttatcttcctCCTTATTTCGGGG
GACTTCTTTTGAGGAAATCCCCTTCGAGGCGTTATGGGTGGGAATCACCT
TTACAGTCGGGAAGACATTATCATCGTCACTTAAAGTGCTTTCATCACTA
GTGCGGGGATTCCTTGACAATAAAGGTTCGCTAGAGGGTGATATCGGTCG
TTTTAAAACTTGAAACCGTGATTTAGTCCGATCGGATAACCGGTTTACGT
CAAATCGGTTAATAGCAGCAATGGAAGATGGACGAAGGATTGTTGTAGGT
GACGGGGTATTGGATCTACCATTGACTTGGAAGCGACCATTATTCACAAC
ATTTAGAGCAGTTTTTTCAGTCATTTCCAAATCTTGTGTTTCAGGCATTG
ATATACTACGCGATAACGAAGGTCTCCGGCGCACTTTGGTAGGAGGGGAC
GTACTTGGTGGGTCCCCGATGAAGAACAATGGTTTGGGTGACTCTCTAGA
TTCAATAGCAGGAATTGGACTTGAGTGACTGCTTTTTATAGAGTGATTTG
ATGAACTTGATTTCAATGAGTTAGATCTGCTCCTTGATTTGCCACCGTTT
TCTTGTTGCAATCTCATGTTCATAAGGTAAGACATGACTCCGGATAGCGG
TACTTCTGGTTCGTGATGAGGGGAGGAAGTTTGTTGCCTCAGACTTTGAG
ATGTCCCAGTTTGATTAGTCAGGGATTCAGGTTTCGAAAGTTGGAACATA
GATTGTAAATTGTTTGTTGAAGATTCAGAGGACATTCGACCAACCGGTAA
CACCCCGTTTGGTTGTGTAGACTGTCCGGGATTATCATCCAGAACTTGAT
CGGCAAAACTAACTCGACTAGAAAGCCTACTAGCGCTTAAATCGCGGGTC
ATGGTTGTACTAGCATGAGAGCTTAGATCGTCGTAGCTCTTGTAATTTCG
TTTGATTTGACCACCACGTAAGATAGTTGTATTGCCTTTAATGTTATGTA
AAACACCCGCGTAAGGGTGGAATTCGAAATCGTCTTCGTCTTCAAAAGGG
GCACGGGGCGTTCCAGCGGGGGTTCCGCCCATCACGCCTTTAGCAAAATT
AGGTCTAGTAAAATACGAATCTCTTGGAAACGGTACAGATGTAAAAGTAG
TTTTTCGTGGATAGTTAAAATCAGTTTGATCGATATTCGAAGGGACAGTC
GTTGCTGACGGATTCGACGAAACTTGAAAACGGCCGATTTTGTATGATCG
GTGACAAGTTGCTTCTAATGAATGAAAAGTCCATTCATCAAGACGATCTA
GCTTGATGTCATCTTCCGACATTCCGTCGAATGGATCATCAAGTTTATCT
TGGACGCCCTGTAACGCCCCAAACACAAACGCCACCATTGTGCACGTATA
ATAAGGCGCCCAGTCGTTGTTTAGTTTTTGTCCCAAATAAACATAATATG
GACTCAACAGTATGGGCAAGGAGAAAATTAACACTTTGGTGAACGACCGG
ATTGAGCGTGGCGAACGGTATTCACGAATGACACGGAGACGTTCAAACGC
TAAACACATCATGCTAACAAAATGTATTGTTCTTGAAACTAAAGGTGCAC
TTGTGGGCATTTGACTACACCGTACTTTATCATTGATTTGGTTCGTATCG
CTCAAATCCTCGTAAATAACTCTCACGATAAATTTACGCCGATCAAGTTT
CTCTGTGAATAAATACTCTCGTAAATGAAACATTAACCCTTTAATTTTAT
TACGTAATGCTTTCATATAATGATCATCAAAAGAACACGCTTCACGCCAA
TCACGCATACAAAATATCCACATCATGGCGCTTGATTTAAAGAGCGCCAA
ATCATTCAAAACTTTCTCTTTCCTTTGAAAGTCAGTGTTGATTGAGAAAG
CTAACGGGAAAACGATGGGTGAAATATACAAACTAACGTGTACATCGTAC
GTAATATTTAACGTCTTACACGCGTAAGTTACTAGAGCAGCGATCGCAAT
TTGTAGGATAACCATAAAATTAAAATTCTCAAAGAAACTTCGAATAAGAT
GACCATTGAAAGCAAAAATACGAAATACGCGTAATGATTTTCGGAACCCT
TTGTACTTTCGTTGTCTACCCTCGTACCACTGATAAATGTCCTGTCGACC
TTCTTCCGCTACAAAGTCAAgcttgttaaaatatttccaatttttagcAG
CCATTTTATATGTCGTCttttctcttaattttttttatctctttcTTCTT
TAAAAC Run BLAST on NCBI protein sequence of TCONS_00005524-protein >TCONS_00005524-protein ID=TCONS_00005524-protein|Name=TCONS_00005524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=753bp
MAAKNWKYFNKLDFVAEEGRQDIYQWYEGRQRKYKGFRKSLRVFRIFAFN
GHLIRSFFENFNFMVILQIAIAALVTYACKTLNITYDVHVSLYISPIVFP
LAFSINTDFQRKEKVLNDLALFKSSAMMWIFCMRDWREACSFDDHYMKAL
RNKIKGLMFHLREYLFTEKLDRRKFIVRVIYEDLSDTNQINDKVRCSQMP
TSAPLVSRTIHFVSMMCLAFERLRVIREYRSPRSIRSFTKVLIFSLPILL
SPYYVYLGQKLNNDWAPYYTCTMVAFVFGALQGVQDKLDDPFDGMSEDDI
KLDRLDEWTFHSLEATCHRSYKIGRFQVSSNPSATTVPSNIDQTDFNYPR
KTTFTSVPFPRDSYFTRPNFAKGVMGGTPAGTPRAPFEDEDDFEFHPYAG
VLHNIKGNTTILRGGQIKRNYKSYDDLSSHASTTMTRDLSASRLSSRVSF
ADQVLDDNPGQSTQPNGVLPVGRMSSESSTNNLQSMFQLSKPESLTNQTG
TSQSLRQQTSSPHHEPEVPLSGVMSYLMNMRLQQENGGKSRSRSNSLKSS
SSNHSIKSSHSSPIPAIESRESPKPLFFIGDPPSTSPPTKVRRRPSLSRS
ISMPETQDLEMTEKTALNVVNNGRFQVNGRSNTPSPTTILRPSSIAAINR
FDVNRLSDRTKSRFQVLKRPISPSSEPLLSRNPRTSDESTLSDDDNVFPT
VKVIPTHNASKGISSKEVPRNKEEDKKQSDSPVQMSEDLAKLFRHKSFHD
TTF Run BLAST on NCBI transcript from alignment at sc0000053:437389..440144 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005524 ID=TCONS_00005524|Name=TCONS_00005524|organism=Clytia hemisphaerica|type=transcript|length=2756bp|location=Sequence derived from alignment at sc0000053:437389..440144 (Clytia hemisphaerica)
GTTTTAAAGAAgaaagagataaaaaaaattaagagaaaaGACGACATATA
AAATGGCTgctaaaaattggaaatattttaacaagcTTGACTTTGTAGCG
GAAGAAGGTCGACAGGACATTTATCAGTGGTACGAGGGTAGACAACGAAA
GTACAAAGGGTTCCGAAAATCATTACGCGTATTTCGTATTTTTGCTTTCA
ATGGTCATCTTATTCGAAGTTTCTTTGAGAATTTTAATTTTATGGTTATC
CTACAAATTGCGATCGCTGCTCTAGTAACTTACGCGTGTAAGACGTTAAA
TATTACGTACGATGTACACGTTAGTTTGTATATTTCACCCATCGTTTTCC
CGTTAGCTTTCTCAATCAACACTGACTTTCAAAGGAAAGAGAAAGTTTTG
AATGATTTGGCGCTCTTTAAATCAAGCGCCATGATGTGGATATTTTGTAT
GCGTGATTGGCGTGAAGCGTGTTCTTTTGATGATCATTATATGAAAGCAT
TACGTAATAAAATTAAAGGGTTAATGTTTCATTTACGAGAGTATTTATTC
ACAGAGAAACTTGATCGGCGTAAATTTATCGTGAGAGTTATTTACGAGGA
TTTGAGCGATACGAACCAAATCAATGATAAAGTACGGTGTAGTCAAATGC
CCACAAGTGCACCTTTAGTTTCAAGAACAATACATTTTGTTAGCATGATG
TGTTTAGCGTTTGAACGTCTCCGTGTCATTCGTGAATACCGTTCGCCACG
CTCAATCCGGTCGTTCACCAAAGTGTTAATTTTCTCCTTGCCCATACTGT
TGAGTCCATATTATGTTTATTTGGGACAAAAACTAAACAACGACTGGGCG
CCTTATTATACGTGCACAATGGTGGCGTTTGTGTTTGGGGCGTTACAGGG
CGTCCAAGATAAACTTGATGATCCATTCGACGGAATGTCGGAAGATGACA
TCAAGCTAGATCGTCTTGATGAATGGACTTTTCATTCATTAGAAGCAACT
TGTCACCGATCATACAAAATCGGCCGTTTTCAAGTTTCGTCGAATCCGTC
AGCAACGACTGTCCCTTCGAATATCGATCAAACTGATTTTAACTATCCAC
GAAAAACTACTTTTACATCTGTACCGTTTCCAAGAGATTCGTATTTTACT
AGACCTAATTTTGCTAAAGGCGTGATGGGCGGAACCCCCGCTGGAACGCC
CCGTGCCCCTTTTGAAGACGAAGACGATTTCGAATTCCACCCTTACGCGG
GTGTTTTACATAACATTAAAGGCAATACAACTATCTTACGTGGTGGTCAA
ATCAAACGAAATTACAAGAGCTACGACGATCTAAGCTCTCATGCTAGTAC
AACCATGACCCGCGATTTAAGCGCTAGTAGGCTTTCTAGTCGAGTTAGTT
TTGCCGATCAAGTTCTGGATGATAATCCCGGACAGTCTACACAACCAAAC
GGGGTGTTACCGGTTGGTCGAATGTCCTCTGAATCTTCAACAAACAATTT
ACAATCTATGTTCCAACTTTCGAAACCTGAATCCCTGACTAATCAAACTG
GGACATCTCAAAGTCTGAGGCAACAAACTTCCTCCCCTCATCACGAACCA
GAAGTACCGCTATCCGGAGTCATGTCTTACCTTATGAACATGAGATTGCA
ACAAGAAAACGGTGGCAAATCAAGGAGCAGATCTAACTCATTGAAATCAA
GTTCATCAAATCACTCTATAAAAAGCAGTCACTCAAGTCCAATTCCTGCT
ATTGAATCTAGAGAGTCACCCAAACCATTGTTCTTCATCGGGGACCCACC
AAGTACGTCCCCTCCTACCAAAGTGCGCCGGAGACCTTCGTTATCGCGTA
GTATATCAATGCCTGAAACACAAGATTTGGAAATGACTGAAAAAACTGCT
CTAAATGTTGTGAATAATGGTCGCTTCCAAGTCAATGGTAGATCCAATAC
CCCGTCACCTACAACAATCCTTCGTCCATCTTCCATTGCTGCTATTAACC
GATTTGACGTAAACCGGTTATCCGATCGGACTAAATCACGGTTTCAAGTT
TTAAAACGACCGATATCACCCTCTAGCGAACCTTTATTGTCAAGGAATCC
CCGCACTAGTGATGAAAGCACTTTAAGTGACGATGATAATGTCTTCCCGA
CTGTAAAGGTGATTCCCACCCATAACGCCTCGAAGGGGATTTCCTCAAAA
GAAGTCCCCCGAAATAAGGaggaagataaaaaacaaagtgattCCCCAGT
TCAAATGAGTGAAGATTTAGCAAAATTGTTTCGACATAAAAGTTTTCATG
ATAccactttttgagttttcttgagatatatttttttctgtatatgattt
cattttgagaaattttgataGTCTTTCCTACGTGTTTGTAAAtgacattg
aaaatattttctagtATTTTATTTCTAAGATAGTCAAGAGGTCAATACTA
AAATCCGAAACATATAATGTAGGTATTCGggaatatttttaagaaaactg
acATCTTAttacatttttacaaaaaggttttgaaatttCTGGCGTGGAGA
CCGtgttattttgagattttttcaataaatttcatttgaaatttaCCTTG
ACACCTAAGAACTAtactttcaaaaatgattttcaaaataaaaaagggac
AGATTATCGGTAATTCTTCTGCCAAATTTACCAAAGTTTATCACGTTTTC
ACCTTTATCATTTTAGTATTTTGGTTCTTAAcgatttttcatttgttttt
atgtac Coding sequence (CDS) from alignment at sc0000053:437389..440144 >TCONS_00005524 ID=TCONS_00005524|Name=TCONS_00005524|organism=Clytia hemisphaerica|type=CDS|length=2262bp|location=Sequence derived from alignment at sc0000053:437389..440144 (Clytia hemisphaerica)
ATGGCTgctaaaaattggaaatattttaacaagcTTGACTTTGTAGCGGA
AGAAGGTCGACAGGACATTTATCAGTGGTACGAGGGTAGACAACGAAAGT
ACAAAGGGTTCCGAAAATCATTACGCGTATTTCGTATTTTTGCTTTCAAT
GGTCATCTTATTCGAAGTTTCTTTGAGAATTTTAATTTTATGGTTATCCT
ACAAATTGCGATCGCTGCTCTAGTAACTTACGCGTGTAAGACGTTAAATA
TTACGTACGATGTACACGTTAGTTTGTATATTTCACCCATCGTTTTCCCG
TTAGCTTTCTCAATCAACACTGACTTTCAAAGGAAAGAGAAAGTTTTGAA
TGATTTGGCGCTCTTTAAATCAAGCGCCATGATGTGGATATTTTGTATGC
GTGATTGGCGTGAAGCGTGTTCTTTTGATGATCATTATATGAAAGCATTA
CGTAATAAAATTAAAGGGTTAATGTTTCATTTACGAGAGTATTTATTCAC
AGAGAAACTTGATCGGCGTAAATTTATCGTGAGAGTTATTTACGAGGATT
TGAGCGATACGAACCAAATCAATGATAAAGTACGGTGTAGTCAAATGCCC
ACAAGTGCACCTTTAGTTTCAAGAACAATACATTTTGTTAGCATGATGTG
TTTAGCGTTTGAACGTCTCCGTGTCATTCGTGAATACCGTTCGCCACGCT
CAATCCGGTCGTTCACCAAAGTGTTAATTTTCTCCTTGCCCATACTGTTG
AGTCCATATTATGTTTATTTGGGACAAAAACTAAACAACGACTGGGCGCC
TTATTATACGTGCACAATGGTGGCGTTTGTGTTTGGGGCGTTACAGGGCG
TCCAAGATAAACTTGATGATCCATTCGACGGAATGTCGGAAGATGACATC
AAGCTAGATCGTCTTGATGAATGGACTTTTCATTCATTAGAAGCAACTTG
TCACCGATCATACAAAATCGGCCGTTTTCAAGTTTCGTCGAATCCGTCAG
CAACGACTGTCCCTTCGAATATCGATCAAACTGATTTTAACTATCCACGA
AAAACTACTTTTACATCTGTACCGTTTCCAAGAGATTCGTATTTTACTAG
ACCTAATTTTGCTAAAGGCGTGATGGGCGGAACCCCCGCTGGAACGCCCC
GTGCCCCTTTTGAAGACGAAGACGATTTCGAATTCCACCCTTACGCGGGT
GTTTTACATAACATTAAAGGCAATACAACTATCTTACGTGGTGGTCAAAT
CAAACGAAATTACAAGAGCTACGACGATCTAAGCTCTCATGCTAGTACAA
CCATGACCCGCGATTTAAGCGCTAGTAGGCTTTCTAGTCGAGTTAGTTTT
GCCGATCAAGTTCTGGATGATAATCCCGGACAGTCTACACAACCAAACGG
GGTGTTACCGGTTGGTCGAATGTCCTCTGAATCTTCAACAAACAATTTAC
AATCTATGTTCCAACTTTCGAAACCTGAATCCCTGACTAATCAAACTGGG
ACATCTCAAAGTCTGAGGCAACAAACTTCCTCCCCTCATCACGAACCAGA
AGTACCGCTATCCGGAGTCATGTCTTACCTTATGAACATGAGATTGCAAC
AAGAAAACGGTGGCAAATCAAGGAGCAGATCTAACTCATTGAAATCAAGT
TCATCAAATCACTCTATAAAAAGCAGTCACTCAAGTCCAATTCCTGCTAT
TGAATCTAGAGAGTCACCCAAACCATTGTTCTTCATCGGGGACCCACCAA
GTACGTCCCCTCCTACCAAAGTGCGCCGGAGACCTTCGTTATCGCGTAGT
ATATCAATGCCTGAAACACAAGATTTGGAAATGACTGAAAAAACTGCTCT
AAATGTTGTGAATAATGGTCGCTTCCAAGTCAATGGTAGATCCAATACCC
CGTCACCTACAACAATCCTTCGTCCATCTTCCATTGCTGCTATTAACCGA
TTTGACGTAAACCGGTTATCCGATCGGACTAAATCACGGTTTCAAGTTTT
AAAACGACCGATATCACCCTCTAGCGAACCTTTATTGTCAAGGAATCCCC
GCACTAGTGATGAAAGCACTTTAAGTGACGATGATAATGTCTTCCCGACT
GTAAAGGTGATTCCCACCCATAACGCCTCGAAGGGGATTTCCTCAAAAGA
AGTCCCCCGAAATAAGGaggaagataaaaaacaaagtgattCCCCAGTTC
AAATGAGTGAAGATTTAGCAAAATTGTTTCGACATAAAAGTTTTCATGAT
Accactttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005524-exon-sc0000053-1491911889:437389..440144 | TCONS_00005524-exon-sc0000053-1491911889:437389..440144 | Clytia hemisphaerica | exon |
| TCONS_00005524-exon-sc0000053-1510915933:437389..440144 | TCONS_00005524-exon-sc0000053-1510915933:437389..440144 | Clytia hemisphaerica | exon |
| TCONS_00005524-exon-sc0000053-1575043694:437389..440144 | TCONS_00005524-exon-sc0000053-1575043694:437389..440144 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:437389..440144 . |
Blast
The following BLAST results are available for this feature:
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