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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005535 ID=TCONS_00005535|Name=TCONS_00005535|organism=Clytia hemisphaerica|type=transcript|length=1978bp
CagaatttaaattgaaaattccGGTTATGTATTATCTAGATTCTACCATA
TGACACAACATATTTACATTCATAaggaaaaataaaggaataaaCTAAAG
CACTGAAATTAAGGAACGTATTTTCTTGAAATGTCATAAATTTACTCATT
CATCCAATCCATTCATTCAGGTATTTTCAAACAGTTCTGCTTTTGAAGCT
GAGAAGGGCTGGAGCTTTCACACGATTACTAAATTTATTCCAAGTCTGTT
ACGTTATTTTCCGAAAATGTCGTAAATTCACGCATCCATTCAATCATTCA
TCCATTCATTCTGGTATTATTTATTCCAAGTCTGTCACCTCAACGGCCGG
CATGTTGACCGGTGTACTAAAATGAATAATCTGAATTGGATCGCGTGACG
AGGACGCTCCTAATGTCCCGACCTGTGGACTACTCTTACTTTTCCCTTCT
TTCGCGACAGGCGGAATAAAACTTCCAATTTCCTCTTGTGCTGGATAACT
GTTTTGTCGTGACACCATAGAATTGCGTCGACTGTCTCTCCGAATGATAT
TCTCCCGATAATCTTCGGGTTCAATATTCGGGTTGATTCGCGTTGATCGG
CAACACGAGAGTTTATTTGTTAATCTACGGATAtcttttcggattttttt
gtcCGTCCAACACAGGATAAAGGGGAAATATGCTACAATGAAATATTTCG
CTTTCACAAGCAAATCAAGCTCTTGTGAcaaatgaaagttttttgaataa
atatagATAAGTACAACTTCGGGTCCAGCTGCTAAGAGGTACGGTAATAA
AATCAAAAGCGTACTAAAAATCGGTTTCAAGGCTGTTTGTGTAATGCTTT
TCTTACGTATGGATAATGATCCGCTGGAATAAATACTGTCACTTCTACCG
GACGGATCTTCTAGCCCGGACGGTAAACTCTCACTACGGCTCAATCGACG
TATTGGCATTTGAACAGCGGCCGACAAATATTCTCGTAGACTGACTAGAG
AATTTAAACTTCTTGATCGTGTCATAGTGGTTGTGCTGTAGGGTCTTAGT
TCGAATTGTTTCACTTTGTAGCCCTTATAACACATATAACCGTGAAAATA
CATGAGCGGAAAACCGGGCATCCAGAATGACCCAAACGAGTACAACATCA
TATAGACTGGATGCAGTTCCCAGTTTTTACGGCACCTTAGAATGTCGGTG
TCAAATTTAAGAGTGATCCACGTTGTCTTGAGTAAAATTAACACTGCGGC
AATGGAAACCACCCAAATAAAGATGACGTAATTGTATCGTTTCCGGCAAA
TTGTATCCTGTATACACGGCATCGGATCCGCGATTTGTTTGTAACGTTCA
TAGCTGATCGCTAATAGTGTAAAATTCTGAGAAATCCACCAAAACTCTGT
GATGGAGAGCAGGATTTTACAGTAATGTTCTCCATCGCTGGGTTGCGGTG
GCGATAAAGTATTAATAATGTGTAATGTTATCACTATAATACCGATGTAA
TTAGAAACAGCCAAATTTGCGAGTAGAAAGTTTCTTCTGCGCAACACGAA
AAGTAGAATCACACCAGTGTTCACGACAAGACCTGCACATATCATAACGA
GGGAAACTAGAATTTGTAGTTCCTGGTATTTCATAGTGTGACTGTTATGT
GCAGTAACGTTCCATGAAGAATTGTTGAATGAAGTTGTGTTGAATGTTGA
TAAATTAAGTTGTGACTTGTTGAATGATTCTGTTGTCTGTAGAGTCTCTG
TTAAACTTTTGAGAtacatgttttgtttttgtttttgttttttttagtct
GGAAAAGAGAGAAGAGTTTGTGTTTTAATTAAAATGTGAgttaacaattt
aacaatttatCAGTGATTTAATCATTTACACTACAAGCAGATCTAAAAAC
AAATACCTCTCGGCCCTTTTCACTCACTCCTTTATTACGCCAAagctcaa
tttctttttttattcttagcCCGGACCT Run BLAST on NCBI protein sequence of TCONS_00005535-protein >TCONS_00005535-protein ID=TCONS_00005535-protein|Name=TCONS_00005535-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp
MYLKSLTETLQTTESFNKSQLNLSTFNTTSFNNSSWNVTAHNSHTMKYQE
LQILVSLVMICAGLVVNTGVILLFVLRRRNFLLANLAVSNYIGIIVITLH
IINTLSPPQPSDGEHYCKILLSITEFWWISQNFTLLAISYERYKQIADPM
PCIQDTICRKRYNYVIFIWVVSIAAVLILLKTTWITLKFDTDILRCRKNW
ELHPVYMMLYSFGSFWMPGFPLMYFHGYMCYKGYKVKQFELRPYSTTTMT
RSRSLNSLVSLREYLSAAVQMPIRRLSRSESLPSGLEDPSGRSDSIYSSG
SLSIRKKSITQTALKPIFSTLLILLPYLLAAGPEVVLIYIYSKNFHLSQE
LDLLVKAKYFIVAYFPFILCWTDKKIRKDIRRLTNKLSCCRSTRINPNIE
PEDYRENIIRRDSRRNSMVSRQNSYPAQEEIGSFIPPVAKEGKSKSSPQV
GTLGASSSRDPIQIIHFSTPVNMPAVEVTDLE Run BLAST on NCBI transcript from alignment at sc0000053:599768..601745 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005535 ID=TCONS_00005535|Name=TCONS_00005535|organism=Clytia hemisphaerica|type=transcript|length=1978bp|location=Sequence derived from alignment at sc0000053:599768..601745 (Clytia hemisphaerica)
AGGTCCGGgctaagaataaaaaaagaaattgagctTTGGCGTAATAAAGG
AGTGAGTGAAAAGGGCCGAGAGGTATTTGTTTTTAGATCTGCTTGTAGTG
TAAATGATTAAATCACTGataaattgttaaattgttaacTCACATTTTAA
TTAAAACACAAACTCTTCTCTCTTTTCCagactaaaaaaaacaaaaacaa
aaacaaaacatgtaTCTCAAAAGTTTAACAGAGACTCTACAGACAACAGA
ATCATTCAACAAGTCACAACTTAATTTATCAACATTCAACACAACTTCAT
TCAACAATTCTTCATGGAACGTTACTGCACATAACAGTCACACTATGAAA
TACCAGGAACTACAAATTCTAGTTTCCCTCGTTATGATATGTGCAGGTCT
TGTCGTGAACACTGGTGTGATTCTACTTTTCGTGTTGCGCAGAAGAAACT
TTCTACTCGCAAATTTGGCTGTTTCTAATTACATCGGTATTATAGTGATA
ACATTACACATTATTAATACTTTATCGCCACCGCAACCCAGCGATGGAGA
ACATTACTGTAAAATCCTGCTCTCCATCACAGAGTTTTGGTGGATTTCTC
AGAATTTTACACTATTAGCGATCAGCTATGAACGTTACAAACAAATCGCG
GATCCGATGCCGTGTATACAGGATACAATTTGCCGGAAACGATACAATTA
CGTCATCTTTATTTGGGTGGTTTCCATTGCCGCAGTGTTAATTTTACTCA
AGACAACGTGGATCACTCTTAAATTTGACACCGACATTCTAAGGTGCCGT
AAAAACTGGGAACTGCATCCAGTCTATATGATGTTGTACTCGTTTGGGTC
ATTCTGGATGCCCGGTTTTCCGCTCATGTATTTTCACGGTTATATGTGTT
ATAAGGGCTACAAAGTGAAACAATTCGAACTAAGACCCTACAGCACAACC
ACTATGACACGATCAAGAAGTTTAAATTCTCTAGTCAGTCTACGAGAATA
TTTGTCGGCCGCTGTTCAAATGCCAATACGTCGATTGAGCCGTAGTGAGA
GTTTACCGTCCGGGCTAGAAGATCCGTCCGGTAGAAGTGACAGTATTTAT
TCCAGCGGATCATTATCCATACGTAAGAAAAGCATTACACAAACAGCCTT
GAAACCGATTTTTAGTACGCTTTTGATTTTATTACCGTACCTCTTAGCAG
CTGGACCCGAAGTTGTACTTATctatatttattcaaaaaactttcatttg
TCACAAGAGCTTGATTTGCTTGTGAAAGCGAAATATTTCATTGTAGCATA
TTTCCCCTTTATCCTGTGTTGGACGgacaaaaaaatccgaaaagaTATCC
GTAGATTAACAAATAAACTCTCGTGTTGCCGATCAACGCGAATCAACCCG
AATATTGAACCCGAAGATTATCGGGAGAATATCATTCGGAGAGACAGTCG
ACGCAATTCTATGGTGTCACGACAAAACAGTTATCCAGCACAAGAGGAAA
TTGGAAGTTTTATTCCGCCTGTCGCGAAAGAAGGGAAAAGTAAGAGTAGT
CCACAGGTCGGGACATTAGGAGCGTCCTCGTCACGCGATCCAATTCAGAT
TATTCATTTTAGTACACCGGTCAACATGCCGGCCGTTGAGGTGACAGACT
TGGAATAAATAATACCAGAATGAATGGATGAATGATTGAATGGATGCGTG
AATTTACGACATTTTCGGAAAATAACGTAACAGACTTGGAATAAATTTAG
TAATCGTGTGAAAGCTCCAGCCCTTCTCAGCTTCAAAAGCAGAACTGTTT
GAAAATACCTGAATGAATGGATTGGATGAATGAGTAAATTTATGACATTT
CAAGAAAATACGTTCCTTAATTTCAGTGCTTTAGtttattcctttatttt
tcctTATGAATGTAAATATGTTGTGTCATATGGTAGAATCTAGATAATAC
ATAACCggaattttcaatttaaattctG Coding sequence (CDS) from alignment at sc0000053:599768..601745 >TCONS_00005535 ID=TCONS_00005535|Name=TCONS_00005535|organism=Clytia hemisphaerica|type=CDS|length=1449bp|location=Sequence derived from alignment at sc0000053:599768..601745 (Clytia hemisphaerica)
atgtaTCTCAAAAGTTTAACAGAGACTCTACAGACAACAGAATCATTCAA
CAAGTCACAACTTAATTTATCAACATTCAACACAACTTCATTCAACAATT
CTTCATGGAACGTTACTGCACATAACAGTCACACTATGAAATACCAGGAA
CTACAAATTCTAGTTTCCCTCGTTATGATATGTGCAGGTCTTGTCGTGAA
CACTGGTGTGATTCTACTTTTCGTGTTGCGCAGAAGAAACTTTCTACTCG
CAAATTTGGCTGTTTCTAATTACATCGGTATTATAGTGATAACATTACAC
ATTATTAATACTTTATCGCCACCGCAACCCAGCGATGGAGAACATTACTG
TAAAATCCTGCTCTCCATCACAGAGTTTTGGTGGATTTCTCAGAATTTTA
CACTATTAGCGATCAGCTATGAACGTTACAAACAAATCGCGGATCCGATG
CCGTGTATACAGGATACAATTTGCCGGAAACGATACAATTACGTCATCTT
TATTTGGGTGGTTTCCATTGCCGCAGTGTTAATTTTACTCAAGACAACGT
GGATCACTCTTAAATTTGACACCGACATTCTAAGGTGCCGTAAAAACTGG
GAACTGCATCCAGTCTATATGATGTTGTACTCGTTTGGGTCATTCTGGAT
GCCCGGTTTTCCGCTCATGTATTTTCACGGTTATATGTGTTATAAGGGCT
ACAAAGTGAAACAATTCGAACTAAGACCCTACAGCACAACCACTATGACA
CGATCAAGAAGTTTAAATTCTCTAGTCAGTCTACGAGAATATTTGTCGGC
CGCTGTTCAAATGCCAATACGTCGATTGAGCCGTAGTGAGAGTTTACCGT
CCGGGCTAGAAGATCCGTCCGGTAGAAGTGACAGTATTTATTCCAGCGGA
TCATTATCCATACGTAAGAAAAGCATTACACAAACAGCCTTGAAACCGAT
TTTTAGTACGCTTTTGATTTTATTACCGTACCTCTTAGCAGCTGGACCCG
AAGTTGTACTTATctatatttattcaaaaaactttcatttgTCACAAGAG
CTTGATTTGCTTGTGAAAGCGAAATATTTCATTGTAGCATATTTCCCCTT
TATCCTGTGTTGGACGgacaaaaaaatccgaaaagaTATCCGTAGATTAA
CAAATAAACTCTCGTGTTGCCGATCAACGCGAATCAACCCGAATATTGAA
CCCGAAGATTATCGGGAGAATATCATTCGGAGAGACAGTCGACGCAATTC
TATGGTGTCACGACAAAACAGTTATCCAGCACAAGAGGAAATTGGAAGTT
TTATTCCGCCTGTCGCGAAAGAAGGGAAAAGTAAGAGTAGTCCACAGGTC
GGGACATTAGGAGCGTCCTCGTCACGCGATCCAATTCAGATTATTCATTT
TAGTACACCGGTCAACATGCCGGCCGTTGAGGTGACAGACTTGGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005535-exon-sc0000053-1491911889:599768..601745 | TCONS_00005535-exon-sc0000053-1491911889:599768..601745 | Clytia hemisphaerica | exon |
| TCONS_00005535-exon-sc0000053-1510915933:599768..601745 | TCONS_00005535-exon-sc0000053-1510915933:599768..601745 | Clytia hemisphaerica | exon |
| TCONS_00005535-exon-sc0000053-1575043694:599768..601745 | TCONS_00005535-exon-sc0000053-1575043694:599768..601745 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:599768..601745 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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