|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005547 ID=TCONS_00005547|Name=TCONS_00005547|organism=Clytia hemisphaerica|type=transcript|length=2007bp
tatttttaaagttcatagcgtcatttttgaaattaaattcttaattaatc
ttaagggatttgattaaaaagcaatctataaaggcaattctttgttaaaa
gtgttaaagaacctaaaacataacttttatgttcaaatgctaaaatcaat
ttttcgactatggtcagagcccttaagtgcaCCCATAGAACGTCTCTTTG
AGGCATCTTTCGAATACCTtttcggggaaaacttcgtcggggaaaagtga
cgaaattttggacaagtgacgaatattttccccaacgaaaattttccccg
gctttaatgcgtttaccaactaccagcaagtgacgaattttttaccgacg
aaaattttccccgacgaaaattttccccgacgaagttttccccgataagg
tacttcTGTCTCGCAATTCCAAACAAACTCGTCTTTAGTCCCTTTTAGCT
TGCTTTTTGTTGATTGCGCTCACAATTGTATCAACAAAAAGTGTTGCAAG
TGACCCTGGGTACAAGATTGTTATagttcattaaaaaaaagaacgcAGTA
ATCTGATTTCAAAACTGCGATAGAAAAGCAAGCAAGAATTTATGTATCAA
AAAAATATGGCAGTTTGAAGTCCCACCGCTTATTTTCACCCTCGCTGGAA
CGTGTTTAAAATCAAGAGTTTTCTTATTACCGTGATGATATTCTTCTTCT
TATTTTTGGGATCCACATCGACATCAATTGTGAAAAAGATTTCAGCCGGA
TACTCCGCATGGACTCTCTGTAAAGTCTTCTTCCAGTCCCACGTGTCTAC
ATCGAAGTCATCATCCACATCCCAACCACCTAACTTATCTATAAAATCAC
GAATTGGTTTTGAGCCCCGTTTTTCTATAAGCTCTTCATTCATACACGAG
GTATAAAAATCTTTCACTTTCATAATAGTTGGCGAATCTGTGGGATGCTT
TTTATCGCATAATTCACCTTTGTAAGTGCCTTCTAAAAACTGACGTAATA
ATTTATCGTTGTTGTCTGAAAGTTCATTAATAGCGGagtattcttctttt
ttttcaggaattttgtGCGATTTTTTCCACCCACCGCATGCATATTCATA
AAAATTCTCACAAGGATCGTAGGCATCATTTAAACCCTTTTTCATGTAGT
CCGCCACTCGAACACAATGATTATCCTTACAAATACCATCATTTTCGTCA
TTGGCTAACGTGGAGACATCCTTGTCTTCTCCACAACTATATAAGTTCAC
ACAGATGAATAATATCGTCAGAATCTGGAGCATTTTGCTCGAATATAAAG
CCTTGAATATCATGCCTTAAGGTGAGcctaaaatacaaaatattgaGTGG
AATCTTTAAATTAAGTCATTGTCGACAAAAGAATAACAGTCAATTTCAAT
AGAACCAAGATATCAGAAATCGCTTATTCTCGGCATCAGCTTGCAACAGT
AAAACACCAAGAAAATGCATGGTTGGGTGcacaattttttgaagattctc
tTCTCCTTTATGCACACTGTGAGTATTTTTCACTTCTGTTTGcggctttt
tttaaatattggatttattttccttttgaaaGCTGCTTCATATGTCAAGT
AACCTCAAAGGGGCATACTACACTGAGTATCAGAGGccgagttttcaaag
agaatatcaacctctgacgacCAAGTGCAAGAATTTTATGCACATGTGTC
AAtgtaatcactgtagaaagaatcaaagatgaagagcaaatattaccata
tcaatgtctagcagactgtatcaataTGCATGTTTCTATTGACAAATTCT
CCAGAAACCTCccagtgtaattgaaatgagtttctttcaaaagaaatctt
ctacatgattcccaaatttataaaagtaattacaaaactattaattatgg
taatGATACTTCGATGGAATCGAAGTAATAGACAAATCTTCTTCAGATGT
TACGATTCTCCATCGCTGGCTCTTTCTTAAAAGcgttgatgacatttctg
agttgtg Run BLAST on NCBI transcript from alignment at sc0000054:95123..97129+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005547 ID=TCONS_00005547|Name=TCONS_00005547|organism=Clytia hemisphaerica|type=transcript|length=2007bp|location=Sequence derived from alignment at sc0000054:95123..97129+ (Clytia hemisphaerica)
tatttttaaagttcatagcgtcatttttgaaattaaattcttaattaatc
ttaagggatttgattaaaaagcaatctataaaggcaattctttgttaaaa
gtgttaaagaacctaaaacataacttttatgttcaaatgctaaaatcaat
ttttcgactatggtcagagcccttaagtgcaCCCATAGAACGTCTCTTTG
AGGCATCTTTCGAATACCTtttcggggaaaacttcgtcggggaaaagtga
cgaaattttggacaagtgacgaatattttccccaacgaaaattttccccg
gctttaatgcgtttaccaactaccagcaagtgacgaattttttaccgacg
aaaattttccccgacgaaaattttccccgacgaagttttccccgataagg
tacttcTGTCTCGCAATTCCAAACAAACTCGTCTTTAGTCCCTTTTAGCT
TGCTTTTTGTTGATTGCGCTCACAATTGTATCAACAAAAAGTGTTGCAAG
TGACCCTGGGTACAAGATTGTTATagttcattaaaaaaaagaacgcAGTA
ATCTGATTTCAAAACTGCGATAGAAAAGCAAGCAAGAATTTATGTATCAA
AAAAATATGGCAGTTTGAAGTCCCACCGCTTATTTTCACCCTCGCTGGAA
CGTGTTTAAAATCAAGAGTTTTCTTATTACCGTGATGATATTCTTCTTCT
TATTTTTGGGATCCACATCGACATCAATTGTGAAAAAGATTTCAGCCGGA
TACTCCGCATGGACTCTCTGTAAAGTCTTCTTCCAGTCCCACGTGTCTAC
ATCGAAGTCATCATCCACATCCCAACCACCTAACTTATCTATAAAATCAC
GAATTGGTTTTGAGCCCCGTTTTTCTATAAGCTCTTCATTCATACACGAG
GTATAAAAATCTTTCACTTTCATAATAGTTGGCGAATCTGTGGGATGCTT
TTTATCGCATAATTCACCTTTGTAAGTGCCTTCTAAAAACTGACGTAATA
ATTTATCGTTGTTGTCTGAAAGTTCATTAATAGCGGagtattcttctttt
ttttcaggaattttgtGCGATTTTTTCCACCCACCGCATGCATATTCATA
AAAATTCTCACAAGGATCGTAGGCATCATTTAAACCCTTTTTCATGTAGT
CCGCCACTCGAACACAATGATTATCCTTACAAATACCATCATTTTCGTCA
TTGGCTAACGTGGAGACATCCTTGTCTTCTCCACAACTATATAAGTTCAC
ACAGATGAATAATATCGTCAGAATCTGGAGCATTTTGCTCGAATATAAAG
CCTTGAATATCATGCCTTAAGGTGAGcctaaaatacaaaatattgaGTGG
AATCTTTAAATTAAGTCATTGTCGACAAAAGAATAACAGTCAATTTCAAT
AGAACCAAGATATCAGAAATCGCTTATTCTCGGCATCAGCTTGCAACAGT
AAAACACCAAGAAAATGCATGGTTGGGTGcacaattttttgaagattctc
tTCTCCTTTATGCACACTGTGAGTATTTTTCACTTCTGTTTGcggctttt
tttaaatattggatttattttccttttgaaaGCTGCTTCATATGTCAAGT
AACCTCAAAGGGGCATACTACACTGAGTATCAGAGGccgagttttcaaag
agaatatcaacctctgacgacCAAGTGCAAGAATTTTATGCACATGTGTC
AAtgtaatcactgtagaaagaatcaaagatgaagagcaaatattaccata
tcaatgtctagcagactgtatcaataTGCATGTTTCTATTGACAAATTCT
CCAGAAACCTCccagtgtaattgaaatgagtttctttcaaaagaaatctt
ctacatgattcccaaatttataaaagtaattacaaaactattaattatgg
taatGATACTTCGATGGAATCGAAGTAATAGACAAATCTTCTTCAGATGT
TACGATTCTCCATCGCTGGCTCTTTCTTAAAAGcgttgatgacatttctg
agttgtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005547-exon-sc0000054-1491911889:95123..97129 | TCONS_00005547-exon-sc0000054-1491911889:95123..97129 | Clytia hemisphaerica | exon |
| TCONS_00005547-exon-sc0000054-1510915933:95123..97129 | TCONS_00005547-exon-sc0000054-1510915933:95123..97129 | Clytia hemisphaerica | exon |
| TCONS_00005547-exon-sc0000054-1575043694:95123..97129 | TCONS_00005547-exon-sc0000054-1575043694:95123..97129 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:95123..97129 + |
Blast
BLAST of TCONS_00005547 vs. Swiss-Prot (Human)
Match: ECE2 (Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4) HSP 1 Score: 102.064 bits (253), Expect = 2.958e-22 Identity = 52/163 (31.90%), Postives = 86/163 (52.76%), Query Frame = -2
Query: 711 DENDGICKDNHCVRVADYMKKGLNDAYDPCENFYEYACGGWKKSHKIPEKKEEYSAINELSDNNDKLLRQFLEGTYKGELCDKKHPTDSPTIMKVKDFYTSCMNEELIEKRGSKPIRDFIDKLGGWXXXXXXXXXXXXXXXTLQRVHAEYPAEIFFTIDVDVD 1199
D + C C+RVA + + L+ PCE+FY+++CGGW + + +P+ + ++ N L D N +L+ LE T + S K + FY SC+ E IE+ G++P+RD I+K+GGW + D ++ + L+ V Y A FFT+ + D
Sbjct: 206 DPSHSTCLTEACIRVAGKILESLDRGVSPCEDFYQFSCGGWIRRNPLPDGRSRWNTFNSLWDQNQAILKHLLENT--------TFNSSSEAEQKTQRFYLSCLQVERIEELGAQPLRDLIEKIGGW--NITGPWDQDNFMEVLKAVAGTYRATPFFTVYISAD 358
The following BLAST results are available for this feature:
|
