TCONS_00005549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005549
Unique NameTCONS_00005549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005549 ID=TCONS_00005549|Name=TCONS_00005549|organism=Clytia hemisphaerica|type=transcript|length=2322bp
GACTTTTTTTCGCATTTCAACACGTGAATCTCGGGGAAATGATAGGAATT
TTTGGGGCTCCAAATCTTTAAAATCCTTTTCAGGGATTGCTTCAATTCTA
ACAACGCATTGTATATCTTTCCAAAAGCTGTATGGACAATCCATTCAGTC
GGCAATGACCACCTAGTGACAGTGcgtaaaaagaatttgaaagaaaaatg
gacCAGCGcagataaaaaagaaagacattAATGTGACCTCGTGACTACCG
TTGTTTTATAataagttacgtaatttttcaagcGCCTGAAATTCTATCTA
ATACAGCGAGTAATGTAGTGTCACGATATTGTCACGTGATGttatatttg
aaaatataaCGAATTTCGAAACTACCCATCGAAAAATCCTGTCACGCTGG
TTTTAACAAAGAAAATCGccaatgaaaatacaaatctTGAAATCCGCGAC
TTAAAAATATCTAAGGATTCTCGAGATTCTTGAAATTCCTCTCGAGAAAG
GGTATAAAAGGCTTTGATTTGTCAATATGGTTTTTTAGGATTTGTACATT
TGTATGTATCAGATATGAATGCTTATTTTCGAGACAGAGCTTTTCTAGAT
AAATAGGTTAACAAGCCTCTACTAGTGGCGATTTCTTAATGCTTGCATTT
TATCATCTGAGAGCTGAATAGCATCGTAAGTCAACTATGCAAAACTTCAT
CTAGGATCAAATCAGTTCCTTATGGTGCAAGTACACAGTCGTAAACATTA
ACTCAATTGATATTAAAGACACACAAAGTTGTTCCGAAGCTCATAGAACA
TCAATCTCGACTTCATCATTTGTCAGTtgtagaaaaattcttttctcgAT
GCTTAATTTCCTGAATATTGTCTTGACCAATAGGGGAGAATCTCCTCCCT
TTATCAGTGAATCCTAATCTAGCATTCGTTCCTGGATTAGGACAGGATAA
TACGAGAGAATAAAAATAGATGGTTTTAATCAAATATATAGAGAAtcaga
tattgatttgatttgaatatTAGAACTAGACATTATTTATTATCGGGAAA
AAGTCACGGTCAATAGAATGCCTTGAGTGAGGATTTAGCAGAACAACATT
ATATTTATCTTACATGTTGTCCAAATCATTCAACTCAAAAAGGAGTCATG
TTACATTTTATGATTGCCAAAGTCATTTGATCAATGTAGACTAAGACTGA
GAAAGAAAACAGTAGAAAATGCACCATGttgagtttttgattttgacaaa
gTCAACTTTTGATTTGTGCTACTAAGTCTGGAAAaatatttggtattttt
tttagAGCATTTACAACGGCAAATCTCTTGGTTTTCCAGATATCAAGTTT
AGCTGTAAAAGCTTCGTAATAGTTGAAGAATAGCATGTGGCCACTATCTA
GTATTGGAAAACCAAATAGTCAGGACAGGAAGTAGTCAGTTCGATAAATT
TAAAATCTATGTAggtattcttttcttttttaaggtaAAATCGTATTTAA
AAACTTCAAGAACATAGTATGCTTCCCAAGATAACAATCACTGTTAATAC
ATCATCGTCATCAAATACAAAGAACTCTATGCGATCATCTAATTCATCAT
GGATGAATCGAAAGAACATACATAAGAACGAAAAACTAAAGACGGGCTCC
GTCTCTAAAAAATGTGGTGGTAACGGCATGGATAATGTAGAATGGTCTGT
ACTGGCTGGCATAAATTGAATGTGACTTGATATTTGAATATACATTGAAC
ATTTATTGACTTTGAACTATATTTATGAACTTTGAGCAAATGTGATATGA
AAGTTACAGAATCATTGGATTGCAAGGGAACATTTGCTGATTTGACATTG
AACTTGGTGCTAGTAGGATCGGTTTTGTCAAGGAAGTGGAGGGACGTCAT
TGGTTTTGTAACTTTGACATCTTTGAAAAGCAACCTCTAATATTCAAGTC
ATCGCAACCACccctgagaaagaatttaacgaAGACATTATTTTACTAAC
GAGGAACTAACGATTTTACGCTAGTCAACATTATTGTAtcattttaacag
atttttgaaaaaaaatctaaattctgAGAGTTTGAAATCAtctcttttta
ataaaaacacttCTTTTACCAACTAATTCTGCCTCCCTCTAACTCTTATG
AAGAGATCGGTAGGAAAACACCAACAATATTCAGTATTTCTCTAAATTGG
CTGTCAGAGGTCAGATCAACATACTGAACATGACATAGTTCTCACTCTCA
CTCTCACCATATGCATATCGAGGGAGTTTCTACGACCAGTGACCACGAct
ggcgaccagataaatttggttT
Run BLAST on NCBI

transcript from alignment at sc0000054:101291..103612+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005549 ID=TCONS_00005549|Name=TCONS_00005549|organism=Clytia hemisphaerica|type=transcript|length=2322bp|location=Sequence derived from alignment at sc0000054:101291..103612+ (Clytia hemisphaerica)
GACTTTTTTTCGCATTTCAACACGTGAATCTCGGGGAAATGATAGGAATT
TTTGGGGCTCCAAATCTTTAAAATCCTTTTCAGGGATTGCTTCAATTCTA
ACAACGCATTGTATATCTTTCCAAAAGCTGTATGGACAATCCATTCAGTC
GGCAATGACCACCTAGTGACAGTGcgtaaaaagaatttgaaagaaaaatg
gacCAGCGcagataaaaaagaaagacattAATGTGACCTCGTGACTACCG
TTGTTTTATAataagttacgtaatttttcaagcGCCTGAAATTCTATCTA
ATACAGCGAGTAATGTAGTGTCACGATATTGTCACGTGATGttatatttg
aaaatataaCGAATTTCGAAACTACCCATCGAAAAATCCTGTCACGCTGG
TTTTAACAAAGAAAATCGccaatgaaaatacaaatctTGAAATCCGCGAC
TTAAAAATATCTAAGGATTCTCGAGATTCTTGAAATTCCTCTCGAGAAAG
GGTATAAAAGGCTTTGATTTGTCAATATGGTTTTTTAGGATTTGTACATT
TGTATGTATCAGATATGAATGCTTATTTTCGAGACAGAGCTTTTCTAGAT
AAATAGGTTAACAAGCCTCTACTAGTGGCGATTTCTTAATGCTTGCATTT
TATCATCTGAGAGCTGAATAGCATCGTAAGTCAACTATGCAAAACTTCAT
CTAGGATCAAATCAGTTCCTTATGGTGCAAGTACACAGTCGTAAACATTA
ACTCAATTGATATTAAAGACACACAAAGTTGTTCCGAAGCTCATAGAACA
TCAATCTCGACTTCATCATTTGTCAGTtgtagaaaaattcttttctcgAT
GCTTAATTTCCTGAATATTGTCTTGACCAATAGGGGAGAATCTCCTCCCT
TTATCAGTGAATCCTAATCTAGCATTCGTTCCTGGATTAGGACAGGATAA
TACGAGAGAATAAAAATAGATGGTTTTAATCAAATATATAGAGAAtcaga
tattgatttgatttgaatatTAGAACTAGACATTATTTATTATCGGGAAA
AAGTCACGGTCAATAGAATGCCTTGAGTGAGGATTTAGCAGAACAACATT
ATATTTATCTTACATGTTGTCCAAATCATTCAACTCAAAAAGGAGTCATG
TTACATTTTATGATTGCCAAAGTCATTTGATCAATGTAGACTAAGACTGA
GAAAGAAAACAGTAGAAAATGCACCATGttgagtttttgattttgacaaa
gTCAACTTTTGATTTGTGCTACTAAGTCTGGAAAaatatttggtattttt
tttagAGCATTTACAACGGCAAATCTCTTGGTTTTCCAGATATCAAGTTT
AGCTGTAAAAGCTTCGTAATAGTTGAAGAATAGCATGTGGCCACTATCTA
GTATTGGAAAACCAAATAGTCAGGACAGGAAGTAGTCAGTTCGATAAATT
TAAAATCTATGTAggtattcttttcttttttaaggtaAAATCGTATTTAA
AAACTTCAAGAACATAGTATGCTTCCCAAGATAACAATCACTGTTAATAC
ATCATCGTCATCAAATACAAAGAACTCTATGCGATCATCTAATTCATCAT
GGATGAATCGAAAGAACATACATAAGAACGAAAAACTAAAGACGGGCTCC
GTCTCTAAAAAATGTGGTGGTAACGGCATGGATAATGTAGAATGGTCTGT
ACTGGCTGGCATAAATTGAATGTGACTTGATATTTGAATATACATTGAAC
ATTTATTGACTTTGAACTATATTTATGAACTTTGAGCAAATGTGATATGA
AAGTTACAGAATCATTGGATTGCAAGGGAACATTTGCTGATTTGACATTG
AACTTGGTGCTAGTAGGATCGGTTTTGTCAAGGAAGTGGAGGGACGTCAT
TGGTTTTGTAACTTTGACATCTTTGAAAAGCAACCTCTAATATTCAAGTC
ATCGCAACCACccctgagaaagaatttaacgaAGACATTATTTTACTAAC
GAGGAACTAACGATTTTACGCTAGTCAACATTATTGTAtcattttaacag
atttttgaaaaaaaatctaaattctgAGAGTTTGAAATCAtctcttttta
ataaaaacacttCTTTTACCAACTAATTCTGCCTCCCTCTAACTCTTATG
AAGAGATCGGTAGGAAAACACCAACAATATTCAGTATTTCTCTAAATTGG
CTGTCAGAGGTCAGATCAACATACTGAACATGACATAGTTCTCACTCTCA
CTCTCACCATATGCATATCGAGGGAGTTTCTACGACCAGTGACCACGAct
ggcgaccagataaatttggttT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003163XLOC_003163Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005549-exon-sc0000054-1491911889:101291..103612TCONS_00005549-exon-sc0000054-1491911889:101291..103612Clytia hemisphaericaexon
TCONS_00005549-exon-sc0000054-1510915933:101291..103612TCONS_00005549-exon-sc0000054-1510915933:101291..103612Clytia hemisphaericaexon
TCONS_00005549-exon-sc0000054-1575043694:101291..103612TCONS_00005549-exon-sc0000054-1575043694:101291..103612Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:101291..103612 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.992581	0.821845	0.518912	0.381142	0.246833	0.153772	0.602639	0.319068	0.294955	0.193198	0.595923	0.38277	0.366266	0.792886	0.971244	0.808885	0.341784	1.01972	0.938789	0.731829	1.17594	0.937851	0.683602	0.592013	0	0	0.815718	0.671863	1.78087	1.33482
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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