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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005582 ID=TCONS_00005582|Name=TCONS_00005582|organism=Clytia hemisphaerica|type=transcript|length=770bp
CgatcaaaatcaaacaaaattctAACATCGTTGGTAATTAGTGATTGTTT
GGTTGGTTTGTTATCAAATCCCATGGCCATATTGATGATGTGGACTGGTC
TGGAAATTACACCTTCAATTTGTAGAATAAACACTATAGCAtatttcttt
gttgtttggtttAGTTCTACATCAGGATTTACAATACTTTTTATTACCTA
CGATCGCTATACAAGTATCACAAAACCGTTCAAATACCATGACATTATCA
CTGATCTTAAAATCAATCTAATTCTTGTGACGATTTGGGTTGGTAACTCA
GTAACGGCACTTTTAAATGCattcaacaaaacatttttactgTATTTTAT
TAACATTGGTTCTGTCATCGGATTTACTATCTTAATCACTAGATATTATC
AGATCTGGAAAGCTGTCAAGCAACGGCAAACAAACATCCTATCGCTTAGT
AGGAACGACCAAGAACATCTACGGACCCATATCCGACTTGCTAAGAAAAT
CTTATTTCTTATGATCGCGTATTTTGGTGCTGCCCTCCCAGTAGTTGTTT
ATGCAATCGTTGTGTTGTATGATCATTTTACACGCCCTTATCAACCGTAC
TTGTACGTCGTTGggattttctttgttcttttcaaCTCTTGTGTTGACCC
TTGCATTTAGGATTCCCTCTTCAATTGAGAACTTCCCTTCACTCACTAAG
CATTCACTTCCCCCGTCAAGGGTTCCAATCCTCAATTAAGGATTCCCCTC
CCCACTAAGGGCGATCCCTA Run BLAST on NCBI transcript from alignment at sc0000054:411577..416170+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005582 ID=TCONS_00005582|Name=TCONS_00005582|organism=Clytia hemisphaerica|type=transcript|length=4594bp|location=Sequence derived from alignment at sc0000054:411577..416170+ (Clytia hemisphaerica)
CgatcaaaatcaaacaaaattctAACATCGTTGGTAATTAGTGATTGTTT
GGTTGGTTTGTTATCAAATCCCATGGCCATATTGATGATGTGGACTGGTC
TGGAAATTACACCTTCAATTTGTAGAATAAACACTATAGCAtatttcttt
gttgtttggtttAGTTCTACATCAGGATTTACAATACTTTTTATTACCTA
CGATCGCTATACAAGTATCACAAAACCGTTCAAATACCATGACATTATCA
CTGATCTTAAAATCAATCTAATTCTTGTGACGATTTGGGTTGGTAACTCA
GTAACGGCACTTTTAAATGCattcaacaaaacatttttactgTATTTTAT
TAACATTGGTTCTGTCATCGGATTTACTATCTTAATCACTAGATATTATC
AGATCTGGAAAGCTGTCAAGCAACGGCAAACAAACATCCTATCGCTTAGT
AGGAACGACCAAGAACATCTACGGACCCATATCCGAGTCTCTAAGAAAAT
CTTATTACTTATGATCGCGTTTTTTGGTGCTACCCTCCCAGTAGTTGTTT
ATGCAATCGTTGTGTCgttttttgatcattttacACGCCCTTATCAACCG
TACTTGTACGTCGTtgggattttcttttttctttttaactctTGTGTTAA
CCCTTGCATTTACATTTGGAAAGATCTTGAATTCAAACGAGCCTGTAAAC
GATTTCTTCGTAGGAATACAGCCTTTGCTTGGCTTTTCAACGGTGGTACG
GTCAATCCAATAGCCGTAATTTCTTGATAAATCAACTTTACTTAAATGAT
TTTACATGATTCAAACTGCATTCTTCCCTACAGTATTCACGTGAAAAGCC
TACTAATGGATGATTTTCGCATTTCCTTTGACGGATTTCACGGGCTCTAT
GGTCCGTATATTTAAGGGTATATTTAAACTGTGAATTCCATTTTATCTAA
CGAAAACATAGATAGACACTAGGCAATGGCATATGTAAACTATCTTAACT
CCGATTGTCATTATTTATATAATTCTCGAAGAAAATGACAAATTGATCCC
ATTTTTGGGAATTCTTGTTACTTCATCACCCCTCTATAGCTCAGATGATG
GTAACCCTTGTAATAACGATTCTTACTGCGCTTCGATGACGGCTGGTGAC
GTTTAAAGGAATTTACACTAAAACTTGTATATAAAATCATATGGCTAGTA
GCTGTCAACAGTAAACAGTATAAACATTGTAAATCAAAGTAtactatttt
atttttacttgtgaaattaaagaaaaatagttCAGGAACTGGTAATTTaa
caagctagacgactaattcagccatagtagaaataaagtaaAATGTAATG
GAGGGAGCAAATTTTagtacaaactaaatcccgtaacaataatatAACGC
TTATACTACTGTTTTACACGCATTGTGAACGACTCCAGTCTCCGGAACTG
GTCAAATCCATACAAATATTTTCGACTTATAAATCTTTCTCCGTGTCTGA
TATATGTATCCTCTGCTTCACAAAGATCTTTCCTCCCCCCATTTTACCTT
CATTTCCGTCTGTTTCCGTTCCAGACTAAGACTATTTCCCCCTAAATAAC
TAAAGTCTATATCCCCCTTGAACCTATACTAATGACTTTACCCCTTCCAC
TGAGGACTCCCTCTTCCATTGAGGACTTCCCTTCACTCACTAAGCATTCA
TCTCCCCCATCAAGAGTCTAATCATCCATTAAGAACTTCTCTTTTCACAA
AGGACTCTCCTCCCCACTGAAAGCGATCCTCAAAACTCCACTCCTTCTCT
AAGAGCTCCTCCAGCTCAACTTAATCAGAACTCTCATTCGGTCTTTTTGG
TTCAAAAAATTATGTTTCTCGCGAATTACTGGTAGATCTTGAGCACAGAT
TTGGTCAAATTCAACAAAGCTCTCTCCATTTCCTGAAACGGTCAAACCTT
TTTTATGACTGTGCATATGGTTAATCTTAAATCGAATACCCCGATCTTGG
TTTGATTCTTGTTATCTTTATGAGCAATCTGATCAGCTAAAAACGCTTAT
ATAAATGCTGTATTTTttattgtaccgtacaaatacaagatCACGTTCAC
Ncgcgtacataaatgctgtatttcagattgtaccgtacaaatacaagatc
gcgttcaaaaaaggggtctggtaagcgagagatcatattttgtgattctt
ttttcgaatgttttgatgttgatttcatccaaataaaagtaaaagaaaaa
atattggaagAGAAGAACAAAACAAATGGAGAGAGTAAAGTTGATGATTA
ACCAGTTATCACAAagtcttaagatgttcttaagatgttcttaatatttt
ggccatcgaagccataGTTTGTTCgagtttaaaaaaaacgtgttgtTGTT
TGGTTGTTATCAGCCTTGATTTCACACCCTACTCGATGCTTTCATTTACT
TCACTTGGTTCTCATATTCAATAGTTACCTTATCTACCCCTTTTACGCCA
GAATTTATTACACCAAAGCAAAATTTCTCTCATATTCAACCGAtctattt
attattatttattatttattacacCAGCAACGAGAAAATAACGCCAAagg
accggcgtaaaaaggCCTGATAAGGTATAGCCGGAGACTACAGTGAAACC
TCCTGcctttagtttgaaaatcaataATCAGATTAACCCATGTAATTTTC
GCCAAACTTTCTTATATCAGGACCATGACCTTTTGAGGAAATACGTCCTA
TGCACGGAGTGATCAGTATCTGTTCGAATATCATCTTTCAGGCGGACGTC
TTTATTACTaagatatgtttttttataagaacatccaaatttttttaagt
gttcggatattcttaactttttgagttttcagcctAAGTATATTCTTAAA
AGGATCTTATTtagaccattttgtgaatattttcaccagtttcctaagaa
atagggtgcttttgagtccacaaatccatgaaatgttcttaacttgttct
taaaattttggccagcgaagccttatgttcttatatagtttgttcttata
aaaaagaaaacgtgtatcgAATCATTTTTTTTATCCTTCTTCTTTATTGC
AATTTCCCTTTACTCtcatcttctttttctattAAGATCATAATTGGAAG
TCAATTCAATAAAATTGAGTCTTTTTTCAGAATAGCTGTTTCTTAAATTG
TTGTagcgagatggagtttttacaagcccTTATTTCatttggttggttgt
taaccagtttaaaacaattttgttactttttctaaagagcgAATCATTNA
ATAGCTGTTTCTTAAATTGTTGTagcgagatggagtttttacaagcccTT
ATTTCATTTGGTTGGTTATTAACCagtttaaaacaattttgttacttttt
ctaaagagcgagtcatgtctattatttcaaatgaccaattatcaaagtat
ctataaaaactcaatctgagctgaAATTGTaaccaattttttcatttcca
aatcaaaataatagttgaaaagaaaatgaatgaaGATTTCTTCATCTGTT
AACATCTGCTATCCCGTGTTACTTTCGAAAAAACGTCAGTCCTGTGATTT
GGATGGCTTAGTTAAGATCTGTCGAAAAATGGATAAAACGATAGATATTT
GCAAATCATACGTTATTAATCTTTCTTAAGACTAAAAAAATGTCATGCGA
CGCAATCTTTAGCACGTCAAACCGTGGTTTTTATCTGGCAGCTACCATCC
TATTTGGTTTGTCAGGAATTATTACAACCTTGGGAAACACTTTCTCCTTG
ATGGTTCTTTGGCAGCCGTCACAACgatcaaaatcaaacaaaattctAAC
ATCGTTAGTAATTAGTGATTGTTTGGTTGGTTTGTTATCAAATCCCATGG
CCATATTGATGATGTGGACTGGTCTGGAAATTACACCTTCAATTTGTAGA
TTAAACACTATAGCACTTTTCTTTGTTACCTGGTTTGGTTCTTCATCAGG
CTTTACAATACTTTTTATTACCTACGATCGCTATATAAGCATCACAAAAC
CATTCAAATACCATGACATTATCACTGATCTCAAAATCAATCTAATTCTT
GTGACGATTTGGGTTGGTAACTCAATAACGGCACTTTTAAATGCAATCAA
CAAAATACTTTTCCTGCATTTTCTCAACATTGGTTTTGTCATCGCATCTA
CTATCTTAATCACTGGATATTATCAAATCTGGAAAGCCGTCAAACAACGG
CAAACAAACATCCTATCGGTTAGTAGGAATGACCAAGAACATCTACGGAC
CCATATCCGACTTGCTAAGAAAATCTTATTTCTTATGATCGCGTATTTTG
GTGCTGCCCTCCCAGTAGTTGTTTATGCAATCGTTGTGTTGTATGATCAT
TTTACACGCCCTTATCAACCGTACTTGTACGTCGTTGggattttctttgt
tcttttcaaCTCTTGTGTTGACCCTTGCATTTAGGATTCCCTCTTCAATT
GAGAACTTCCCTTCACTCACTAAGCATTCACTTCCCCCGTCAAGGGTTCC
AATCCTCAATTAAGGATTCCCCTCCCCACTAAGGGCGATCCCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005582-exon-sc0000054-1491911889:411577..412042 | TCONS_00005582-exon-sc0000054-1491911889:411577..412042 | Clytia hemisphaerica | exon |
| TCONS_00005582-exon-sc0000054-1510915933:411577..412042 | TCONS_00005582-exon-sc0000054-1510915933:411577..412042 | Clytia hemisphaerica | exon |
| TCONS_00005582-exon-sc0000054-1575043694:411577..412042 | TCONS_00005582-exon-sc0000054-1575043694:411577..412042 | Clytia hemisphaerica | exon |
| TCONS_00005582-exon-sc0000054-1491911889:415867..416170 | TCONS_00005582-exon-sc0000054-1491911889:415867..416170 | Clytia hemisphaerica | exon |
| TCONS_00005582-exon-sc0000054-1510915933:415867..416170 | TCONS_00005582-exon-sc0000054-1510915933:415867..416170 | Clytia hemisphaerica | exon |
| TCONS_00005582-exon-sc0000054-1575043694:415867..416170 | TCONS_00005582-exon-sc0000054-1575043694:415867..416170 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:411577..416170 + |
Blast
The following BLAST results are available for this feature:
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