TCONS_00005651 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005651
Unique NameTCONS_00005651
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1881

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005651 ID=TCONS_00005651|Name=TCONS_00005651|organism=Clytia hemisphaerica|type=transcript|length=1881bp
TTATAGAAAAAATGAGTTCAAAGAGAGGTGCCAGCGGGGATGGATCAGAG
CCGCCATCAAAGAAGAAAGCTTTTTTGCTGTCACAAACAGCTGTAAATCT
TGGACCCATATCGACTGagGAAGAACTTGACTTGAAAgttgtcaaaattc
aaaatgccaAATTGTACTCAAAATTGGAAGAGAAGAACGCACAAGAAGAA
GAGTCCAAAGTGCGATTCGCCAAATTGGAACGCCTTCGTAACAATGATCA
GAATATTATCTCTTCAATGAATGTTGCTTGGAACCAGCTTGATCAAGATG
TGAACAACTTGCTCAAAAGGTTTGGTGATGTCTCTGAAGATGAAGCACTA
GctATGAGTGAAACAACGGTAGCATTCCTGGAGAAACTATCCAATCGAAC
GACCAAAGGAACATCAGAAGAAATCCAAAAGAGAGTCACACACTCTAGTT
CTATAATCGAACGTTTGGTCGTTAGAATAGAGAAAAATATGAAGAGAAAT
AAAGAACTTATTGAAACGCTGAAGAATGACAAGaaggaggaaaagaaatc
tCTGGGCgagaaaaaagttgaaggagATCAAAATGATTTTGAGGACGAGA
GGAACGACATTTCATCAACTGAGTTGGAATTGAGACAAGAATTGTCGTTG
ACCaagagtgaaaatttgaaattgcaCGATTCGATGACATCCCTACAGGA
CAAGTACCGGACCATGTCAACTGAGTATTCCGAAATGAAAGATAGACTAG
CGACCATGCAAAAAGAGAACGCTGAACTCAAAGCCAAACAAGAAGATATG
GAGTATGACTTGCAACGGGCTACCAAACAATTCGAAAAACTAATCAAGAA
ATTGAACGAGACTCACGAACAGGGTTCCAAGTCTAGTGGAGGCAGTAGCG
CGGTGAGCGGTTCTTCGCAACAAGCAGTAAGCAGTGGCGGCGGTGGTGGA
CACGTGAAGCTGGTCAAAGATACTcctGAAGATATTAAAGCAGAGATGGA
TGCTAAAGACGAGTTAGCCAACAACCGTCTTGAAGAATTGAAGAAGTTAC
AAGAACTCTATCAAAACCTGCATGTTGAGCACGACAAGTTGAAGCAACAG
CTGATGCAACTTCCAGACGAAGTTATCATCAATCACACGAAATACAAAAT
GTTGCAAACGCAATTCAATTTGTGTTACAATGACGCACAAGAGATACGGC
GACATTGCGAAGAAGCACGCAAGATAGTGGTCAACAACAGAAGCCAACAC
ATACAACAACAAGAACATTACGAGATGGAGATTCAAACACAGCGCAAAAA
AGTACGCGCAGAAATCTCTCAACTTGAGAGAGCGTTGGCTGAATCAAGAA
AGGATTTGGAATTGCTGAGAGTAGAGTATGAACACAATATGAAAGCCCAC
GAACAAATTGGACCAATGGCTAAAGAAATGAGACATCTCATCAATAGTTT
ACAGaaccACAACCAACAACTGAAAGGAGAAGTATCACGGTACAAAAAGA
AGTTGACCGATGTTGAAAAGAAACTAGGAGACATTGATAAAACAAAATCG
CCTGACAAGGAGCGCGACATCAGCGATTACATCGATCTCATCGACGCTCC
CAACGCACCTACGTCCGCTTCTTCATCGCGGTCGGAGTCGAGTCATTCGA
GCGATGAAGGGGACTACGATGACGTCAAAATGTTAAGGACCAAACTGAAG
TTAGTACATATGGTTTATATTATACCTTTTCATTTTAAGTTTGTTATTTT
TGACGAGgactaaatttgacaaatttaaaCAACatcatagcttcagccag
gtttctagctccccccaacaaagtaaggtccccccaacaatttagctccc
cccaaaaaattgccttgtgctaggtccccta
Run BLAST on NCBI

transcript from alignment at sc0000054:443912..453311-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005651 ID=TCONS_00005651|Name=TCONS_00005651|organism=Clytia hemisphaerica|type=transcript|length=9400bp|location=Sequence derived from alignment at sc0000054:443912..453311- (Clytia hemisphaerica)
TTATAGAAAAAATGAGTTCAAAGAGAGGTGCCAGCGGGGATGGATCAGAG
CCGCCATCAAAGAAGAAAGCTTTTTTGCTGTCACAAACAGCTGTAAATCT
TGGACCCATATCGACTGAGGTGATTTTGAATTTTTCTCAAAATATAGCCA
TAATGTTATATTATTGTGTTATTATAGAAATTATTTTCGCGGAAATATGA
TGCTAAAGTTCCTGTGACTATTTTTAGTGACTTAATCTTCTTTTCTTATC
GGTAAGAAGTATTGTAGTTTCTTCTTCATGGGTATTTTTGGAGAAATTAG
CTACACATTGTATAACATATACATATCTGTTTCATTTTCAATGTTAAAAT
AAGTCAACTTTGAACTGAACAAAGAATCTCTGCTCATTCGAGGCCATTGC
TATTCACATTCTTGACTACAAATTTGGTAGCGTTAAACTTTGGTATTTTG
AGATCATAATGAATGATAATATAATGGTTTAAGATGTTTATTTCAATCTC
ATTTCTGCTGTAGGAAGAACTTGACTTGAAAGTTGTCAAAATTCAAAATG
CCAAATTGTACTCAAAATTGGAAGAGAAGAACGCACAAGAAGAAGAGTCC
AAAGTGCGATTCGCCAAATTGGAACGCCTTCGTAACAATGATCAGAATAT
TATCTCTTCAATGAATGTTGCTTGGAACCAGGTACAGGATTTTTTCCTCA
GTTTGACATATTTTACTTTTCAAACTTTTTGTTCTAATATTGTTGAATTT
TCCCCATATTGTTTTTGTATATTTTCAACTGCAATTAACGAACGGACGAA
ATTTTTGTTTCTTGAGTTATTAATTTCCATTTGATTTTATGTGTTTAAGC
TGGTTTAAGTAGCTATACATTACCACAGAACCCATTTTCCGAGACCATCC
TATTCCATTTGTTACGAATTACCAATGTTGCAAATTAAAATAATAACTAT
GTCTCTCTTTTCTCTTTTCCATTAGCTTGATCAAGATGTGAACAACTTGC
TCAAAAGGTTTGGTGATGTCTCTGAAGATGAAGCACTAGGTATGGTGTTG
TTTACTTTTACAATGATTTTTGGCATTTCTATATGGTTTTATTCTTTGGA
AATGTTTGCAGAAACCACATTATAGTGTTTTGGTCTTTAATAACATTCCT
TGAAAGTGTGCAGTGGGCCAAAACACTTTAATTTGACCCCCTACATACAA
CACTGCTCAATATCTTGTCAATATTTCTGAGATGAAAAACACAATGATAG
TGGTAATAAAGAACTAATAAAAGGTCGTGTCTTGATAATTTCATGGGGAT
TTCGTTTGAAAACCAAAGTACAAAGTAAAAAATTTCCCTTCTAATCGCTT
AATAATTTTACATTAGAACCTTGTTTCATACCCGTCTTTCTGACAACTTG
ATATCGTTCTTAAAGGGATAATCAGATGGTTCGAGATATTTAGATTGCAG
AAACCTTCTGTGGTCCTTAGTAAAACCTCAGAGTATTTTTGTGTAACAAT
TTTCCAAAATCGAGATATCAAAATTTGAAATTTTTGAAAATGGGTTCTTA
CGTTGAAATTCTATTGTTTTCATCCTAAAAGTCAAAAACTTGTAACTTGA
ATATCTCGACTTTGGAAAATAGTAAGGCAAAATTATTTCGAGATTTTGCT
CAGGACAATAGAAGGATCCCACATGCCAAATATTACAAACCATCTGAGTA
TCCCTTTAAGACCATGTTCAAACGTACCGGTTTCTGAAATAAAGCCATTC
TATTGGTTAGAAATGACGTAAAAATTGAATTTAACCAATAGAATGAATGG
ATTCATTTCGTTTCTTCACCGTAGACACCGTAACCCGAAGCGTGTGAATG
TAGTCTTAAACTTAAATAANTTTCACCGTAGACACCGTAACCCGAAGCGT
GTGAATGTAGTCTTAAACTTAAATATTGCTTTCTTTTGTTTAGCTATGAG
TGAAACAACGGTAGCATTCCTGGAGAAACTATCCAATCGAACGACCAAAG
GAACATCAGAAGAAATCCAAAAGAGAGTCACACACTCTAGTTCTATAATC
GAACGTTTGGTCGTTAGAATAGAGAAAAATATGAAGAGAAATAAAGAACT
TATTGAAACGCTGAAGAATGACAAGGTACTTTATCGGGGAAAAAATGTCG
GAGTTTTATTTCGTGGGGGAAAAATTTCGTCACTGTCACGCGTTTATTAG
TTACCTGAGAGTACAGTGGAACCTCTAATTAGCGGACACCATCGGGGAAA
GGGGTTAGTGTCCGCTAATTAGAAGTGTCCGCCTTTTAGAAACTTTTGAT
CTCGGAGCTCCAATTTTGAAATTAGGCCATCCCAGGGTGTTAAAAATACA
AAATTGGGGTCTAAAGTACTTATCTGCAGACACTAGGCCAAAGAAGAACA
AGAGAAAGGTTATTAAAACAGAGCTCGAGTGACTGGCAAGAGGTTAAATC
GAGGTAGTGGGTACGGACTTAAGTACCAGTGATTTATGATTCCTTTGGTC
TACCTAAGTTTGTTGAATGGGTCAAGGGGAACTGGAAATTTGTAGAAATA
ATTTGAATAATAAGACTAATAAGTGCTTGAAATAAAAATATCTAAAATTT
TTTTTTTCGATTTTGGACGTCTGTGCCCCGTTTGATATTCAATGTCCGCT
AATTGGAGAGCTAAAATAGGGGTTTTGGCCATTTCGTGCGAAAAAAATTT
GTCCGCTAATCAGAGGGTCCGCTAATTCAGTGTCCGCCTTTTAGAAACTT
TTTTATGAGGTTTTGACTAGGAAACGGCCGGGGAAATGAAATTGTCTGCT
AATCAGAGGTGTCCGCCTTTTAGAGCGTCCGTTAATTAGAGGTTTTACTG
TACTATCCTTTTGAACGCTGATTTACAGAGAGAACTTTTGGGTTTCATTA
GAATATTGAAGATCTTTCATGTGAGATGTAGAGTCCTTTTCGTGTATATA
TTTTGCGTTGAAATGAATTGAAAAACAGCAATAAGGCTTTTGATGCGGGG
TTCTTTCACAATATTCAGAAATTGGTGCCCTGGTGTTGGATTTTCATAAT
CCAAGAAGATTTCAATATTTTGATTTTTGGAATATTTTAATTCTTGGAAT
TTTCTTCTAGAAGGAGGAAAAGAAATCTCTGGGCGAGAAAAAAGTTGAAG
GAGAGTAAGTACTTTATATTTTGTATAAAATAATATCTTTCCATTTAAAA
TTACTTTTAGTTTATTCAACGACTTAATGTTTGTTTTTTCCAATTTTACC
AAACTATCATTTACTCATTAAATTAAAGGTGCAACACTGCAAATTTGATT
CTAAACAAGTCCTCAAAACAAGAAGAAAAGAAGACACTGTGACGTGCGGC
AAAGAATTTGAAAATTTCCTTAGATGTCGGTTTTGTATAGACAATCTTCC
CAAGAAAAATGTTTTAAACATAATTCTTTTTCAGTCAAAATGATTTTGAG
GACGAGAGGAACGACATTTCATCAACTGAGTTGGAATTGAGACAAGAATT
GTCGTTGACCAAGAGTGAAAATTTGAAATTGCACGATTCGATGACATCCC
TACAGGACAAGTACCGGACCATGTCAACTGAGGTAAAATTCATTCATTCA
TTCATTCATTCAATACTTTATTCATTCATTCATTCATTCATTCAATAATT
TATTCATTCATTCATTCAAAAATTTATTCATTCATTCATTCAATAATTTA
TTCATTCATTCATTCAATAATTTATTCATTCATTCATTCAATAATTTATT
CATTCATTCATTCAATAATTTATTCATTCATCCGTTCATTCAAAGAAGTT
CTGGTCAGTCCTCGTGTTATTCTAGAGATCTGGCTCTCGGTAATCTCCCC
TAAAGATAGTGTCGGAACAAAATATTTTCAACTTTTCAATGCTAAGTTGG
TAGAATGCTTAAAAGCTTGGTACCCACTGAAGAAGATAAGTTAGCCGCGA
AACACTTGTTCACAAAAAATGAATCCAGATATCTGGAATTAAATATAGAA
TAGAACCAAAAAAATTGATAAGCGACGGAGACTGATGGAGAATTACAATG
TCTTCATTTTTTATTCCTCAATTATTTTCACCATATTGCAAATCGTCTAG
ATTCATTTCGCGATTCACTTATTTTTTAAGTGGACACCCAGCTTTTTCAA
AAACTTTTCCCCCCGAACAAAATTTCTCTTTTTTTAATCTTTCAAGTATT
CCGAAATGAAAGATAGACTAGCGACCATGCAAAAAGAGAACGCTGAACTC
AAAGCCAAACAAGAAGATATGGAGTATGACTTGCAACGGGCTACCAAACA
ATTCGAAAAACTAATCAAGAAATTGAACGAGACTCACGAACAGGGTTCCA
AGTCTAGTGGAGGCAGTAGCGCGGTGAGCGGTTCTTCGCAACAAGCAGTA
AGCAGTGGCGGCGGTGGTGGACACGTGAAGCTGGTCAAAGATACTGTAAG
CCTTTTTCTTTGCATAGATATTTAGTAGAGATGTTTAACACGCACGGGGA
ACACAAATTTGCTCAAGTTATTGAAATTTCGAGTTGTGAAGTACGGTTTA
TAAGGTTGGGCTTAAAAAATTGTTGGTTTGCCGTCACCCAAACCCTAGAT
TTTGGAGGTGGGTCGGTCGGAAAATTTTTTTATCTTGTTCATCCATGGAA
TTTTTGTCTGCATTTTGTAATTTTTGAAGAAGGAAAAATTCGATTTGTCG
AAATAGCAATAAAAGTCGGAAAGTTTAAAGAAGAATCGGTCGGCTGACGG
TAAACCAACATCAAGTCCAGCCTAAGGCATTGTTAACCTGGAGGAAGGAT
AGAAAACTCCGAGTTGAGGAGATATTCGAATTAAAGGAAACTCCATTGTA
TCTTTTTTGATGTCATACTTTTTTCACCCCTTTTTTCAATTTTTTTTTTA
TTTTAAGCCTGAAGATATTAAAGCAGAGATGGATGCTAAAGACGAGTTAG
CCAACAACCGTCTTGAAGAATTGAAGAAGTTACAAGAACTCTATCAAAAC
CTGCATGTTGAGCACGACAAGTTGAAGCAACAGGTGTGTAAAAACTAATG
AGAAGATTTTTAGTTTAAAGTTATTTGAAAAATTTCCATTCAAGTCTTAA
CTTGAGAGCTCTAAATGTTTCCAATTACTAGGTAAGAATTTTTTTAATCA
AAAAACTCTCAGCTGCCAAATTAACGGGAGGGGGGTTGCATGGAAAATTC
AAATTTTAATAGACGGGAGGGATGTAATTGCAAGTTGGGGTTGGAAATTA
TTTCTCTAAATAACCCTAAAATAAGGTAATTATAGACTAGTAGAATAAGC
CTGTTTGGAGCAAAATATAAGGGACTCTTTTTTTGACAGCTGAAAATATT
TTTAAAGATCAACGAACGGAAGGCCCGTTTATTAGGCACCTAAAAGTAAA
AATAAAAATGTGTTCGTTTGTTTCCACTACAGCTGATGCAACTTCCAGAC
GAAGTTATCATCAATCACACGAAATACAAAATGTTGCAAACGCAATTCAA
TTTGTGTTACAATGACGCACAAGAGGTATGAACCATTATTTTTTAAGCCC
GAAGAGCTAGGGAGGAATATTCAACCTTTCTCAAGGCAAGAAAAATCGAA
GCCTTGAGATTTGTCCTGCTTTTGGAAATGACAGATTGAATTTAGGAATT
TCTTTGTTTCCACGCGTCATATTTTTTTTCAAANAAATCCCGAAGAGCTA
GGGAGGAATATTTAACCTTTCTCAAGGCAAGAAAAATCGAAGCCTTGAGA
TTTGTCCTGCTTTTGGAAATGACAGATTGAATTTAGGAATTTCTTTGTTT
CCACGCGTCATATTTTTTTTCAAAATCTGGCGATATATATTTTACTGGCA
ATTTTGCGTTTGTGTGAAATCCACGCGGGGTGCACGTTTTAGATTGGGAA
TAGTAAGTTGTTTCATTTTCCACCCAAGAGTTTCATCTCAATGGTATGAA
CAGAAGAACCTTCTTTCCGCTGGTTTAAAATGAAGAAAGATTCGAATCCT
AAAAGCTCCAATCAGCAATATATTCAGTATCAATACAATAATATGCACTG
AGATACTATTTCCTAAATTTTGGACATTGCTCCTTCTAAATTTCTGATCG
CTGATCACTAAAATTCATGCTTTATCTCATCATTATTTCCCTCTTCTCTA
AATCTTACAGATACGGCGACATTGCGAAGAAGCACGCAAGATAGTGGTCA
ACAACAGAAGCCAACACATACAACAACAAGAACATTACGAGGTATAAACT
CTATTCCTTTTCCATCCTTAAGTAAGTAAGTATGTCTGCAACCGCAGTCG
GAGGTGACACGAAGGCTCCTCTTTCGATAGCTATTGACCCGAAGCCTCCT
CATTCGATAGCAATTACCCGAAGGCTCCTCTTTTGATAACTATTAACCCG
AAGGTAGGGGAGGGCGCCACTCTTTTTCCCTGGATTTCTCCACTTACCCT
TGACCCTCTTTTTAATTTCTGAGCATCAAGCAGAGAGGCATCAAGTACCA
TTTTGAGAATCTTTGGTATGACCCGGCTGGGGTTCAAACTCACAACCTCC
TCACGAACTGTAGCCGGATGCTCTACCACTGCACATCCTTAAAATTATCA
ACATTAAGGGTACCACTTTTAAAAAACTCCGATCAAAGATTTTACTTGAA
CGAAATCGAGAAACTGTCCAGGGTATATAAAGGTCAGTGGGTAGTAATTT
ATTCCATTTTCCTCATGACCCTTATTGAGTTATCATTTGAAAATGTCAGA
TGAACAAAAAAAATTGTATGAAAAATTTCCACGTTTGATATTACTTTTTC
CTGTGAATATTGCTTCCATCTTTCATAAAATGAAGCACCTAAAAGCAACG
CATCACTGGGATAAAACCACCTACCTCTTCTTTGTATTCATGATAAAATG
CGGTTAAGTAAATCGGTAAAATCACGACAACGAACGAAAATTTAGCAGGC
TAGTGAGTTTCAACCAATCAAATTTCGTATTTTCACTAGCCTTATACATT
TTTCGTCCGTCGTCGTGATTATCCTTGTATGCTTAACCTCAGTAATATTG
CAATGTCTTCAACGGACCCAACAGCTAATTGGTTGAAAGTGACGTATTGA
CTGATTATACGTCACTAACAACCAATCAGCTGTTGGGTTCGTGATGTAAT
GTCAGAAGACATTGCAATGTTGCATATCATGAATTACTTCTCGTGAGCAT
ACCTCTGGTAGCCTATTCAGACAGAGCTCCTCCACTATTGCTCGAAAGAA
AAATGAAGCCTTCACATTAGCCCGATCTGAATTAAAGGTTAAAAAAGTCG
ATCAGCTTTTATTGAATACACCTTTTCGACCGTAGTAGTGGGCATTTTTA
TCCGTTTTACCACCCTAAAACCGTCCCAGTCTTTTTTTCACCCCTAAAAA
CAATAGAGAAAAGTGTAAGAAAGGATTTGATCGAGTTTAGGGTGGTAAAT
TAAATAATAAAGTGGTAAGCGCCTGACTGTGCGACTACGATCGAAAAGGT
GTATTTGCTTGTTACTTTTTATCTCCAAGCAAAAAAATAATTGAATGGTG
GCGTTCCATATTTAGGACTGCCATAAATTGAATTGATCCCGTCTCACTTA
TTGCATGTTTTTCTAGATGGAGATTCAAACACAGCGCAAAAAAGTACGCG
CAGAAATCTCTCAACTTGAGAGAGCGTTGGCTGAATCAAGAAAGGATTTG
GAATTGCTGAGAGTAGAGTATGAACACAATATGAAAGCCCACGAACAAAT
TGGACCAATGGCTAAAGAAATGAGACATCTCATCAATAGTTTACAGGTAT
TGAAGCTGTTATGCGAATTCGGACCCAGTCCTTCAGTTCGGTGTTCTATG
ATTCTGATAGCGCTCACAAAATGATATCATATCACGTCACTCAGTAAAAT
CAAAATTTGGTGCAAGTGGCTCTGGGTAAGAGATATCCGATGATGTTTGT
TATTTTTACAATGTCAAAAATATTTTATTGTATTTTTGCCTCAATCCTTT
TTTGTATTTACTCTCACAAAAAACGGATATGCTGCTCTTGAAAAAAACTC
CTTAGTCTATTTTTCTTTGACTTCCAAGAGTTCCTGCTTAACGTTATACC
TAGTATCGAACTTGAGTGCAACTGGTTTGGTTTAAAGCCGTGACTGCACG
GATCTCTAAAGTATTTTAGAGCGTTCTGGCGTGTAGGGAACCTTTCAGTA
CATAATTACCGAATGATTGATTAATTTTGTTTTGAATATTAAGCCACAGA
TGACGTCTTATATGTGCTAGATGAAACGCTTGAAATTGCTGACTCGTGAA
ATTTAATTCAAATGAAATTTTTGAAATCAGATTTCATTTTTGAATACCCT
GTAAATCTGCTATTTATGGCAAAAATTAGCTTGATTAGTTTGATTGCCGT
TGTTTTTTCTTTTTAGAACCACAACCAACAACTGAAAGGAGAAGTATCAC
GGTACAAAAAGAAGTTGACCGATGTTGAAAAGAAACTAGGAGACGTATGT
AGCACACTAAGATAAATGTTAATTTTCGCCTTCCGGGGTGTTATTCAAAT
AATGACCTTGTTCTTGTCAACTTTTAATGCCTTTTCAAGGACACAGATTT
AGGTTACTCGTAGTATTTTGCAACATTTTTGCATGACACTTAAAAACATT
AGCGAGATTATGTATCTGGAATTCTCTATGGCTACGGCTAAAGCGGCGAG
GGAAATGGCGAGTAAGGCAAGTAATGGCGGGTGAAAGCAAGTTCGATATT
TGACGTACGGCATTATGTCGACTTTGCTTATACGGTGTTTTGGTGTTTTT
CCCGTACAGAGCAAAGTAGACAACGACATATCGCCTTTGGTGACGACCCG
CATGGGCAGCCCCGCAACTGTAGCCGTAGAATATCTCCGATACATAATCT
CGCTATTTTCAGCCACAGTGCATAGTGGCCAGCTTCTGATTAACCTCATC
CAAACTTTATTTCATCAATCTCAAATTGTTTTGATAGTGGAAAATATACA
GATGGGATCTGAATAATACACTTGCTAAAGAACCATGTGCTATATTAACA
GATTGATAAAACAAAATCGCCTGACAAGGAGCGCGACATCAGCGATTACA
TCGATCTCATCGACGCTCCCAACGCACCTACGTCCGCTTCTTCATCGCGG
TCGGAGTCGAGTCATTCGAGCGATGAAGGGGACTACGATGACGTCAAAAT
GTTAAGGACCAAACTGAAGTTAGTACATATGGTTTATATTATACCTTTTC
ATTTTAAGTTTGTTATTTTTGACGAGGACTAAATTTGACAAATTTAAACA
ACATCATAGCTTCAGCCAGGTTTCTAGCTCCCCCCAACAAAGTAAGGTCC
CCCCAACAATTTAGCTCCCCCCAAAAAATTGCCTTGTGCTAGGTCCCCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003195XLOC_003195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005651-exon-sc0000054-1575043694:453193..453311TCONS_00005651-exon-sc0000054-1575043694:453193..453311Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1575043694:452631..452798TCONS_00005651-exon-sc0000054-1575043694:452631..452798Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1575043694:452273..452336TCONS_00005651-exon-sc0000054-1575043694:452273..452336Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1575043694:451187..451368TCONS_00005651-exon-sc0000054-1575043694:451187..451368Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1575043694:450158..450201TCONS_00005651-exon-sc0000054-1575043694:450158..450201Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1575043694:449730..449877TCONS_00005651-exon-sc0000054-1575043694:449730..449877Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1575043694:448867..449115TCONS_00005651-exon-sc0000054-1575043694:448867..449115Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1575043694:448279..448404TCONS_00005651-exon-sc0000054-1575043694:448279..448404Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1575043694:447787..447879TCONS_00005651-exon-sc0000054-1575043694:447787..447879Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1575043694:447071..447151TCONS_00005651-exon-sc0000054-1575043694:447071..447151Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1575043694:445516..445695TCONS_00005651-exon-sc0000054-1575043694:445516..445695Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1575043694:444818..444895TCONS_00005651-exon-sc0000054-1575043694:444818..444895Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1575043694:443912..444260TCONS_00005651-exon-sc0000054-1575043694:443912..444260Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1510915933:453193..453311TCONS_00005651-exon-sc0000054-1510915933:453193..453311Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1510915933:452631..452798TCONS_00005651-exon-sc0000054-1510915933:452631..452798Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1510915933:452273..452336TCONS_00005651-exon-sc0000054-1510915933:452273..452336Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1510915933:451187..451368TCONS_00005651-exon-sc0000054-1510915933:451187..451368Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1510915933:450158..450201TCONS_00005651-exon-sc0000054-1510915933:450158..450201Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1510915933:449730..449877TCONS_00005651-exon-sc0000054-1510915933:449730..449877Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1510915933:448867..449115TCONS_00005651-exon-sc0000054-1510915933:448867..449115Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1510915933:448279..448404TCONS_00005651-exon-sc0000054-1510915933:448279..448404Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1510915933:447787..447879TCONS_00005651-exon-sc0000054-1510915933:447787..447879Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1510915933:447071..447151TCONS_00005651-exon-sc0000054-1510915933:447071..447151Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1510915933:445516..445695TCONS_00005651-exon-sc0000054-1510915933:445516..445695Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1510915933:444818..444895TCONS_00005651-exon-sc0000054-1510915933:444818..444895Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1510915933:443912..444260TCONS_00005651-exon-sc0000054-1510915933:443912..444260Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1491911889:453193..453311TCONS_00005651-exon-sc0000054-1491911889:453193..453311Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1491911889:452631..452798TCONS_00005651-exon-sc0000054-1491911889:452631..452798Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1491911889:452273..452336TCONS_00005651-exon-sc0000054-1491911889:452273..452336Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1491911889:451187..451368TCONS_00005651-exon-sc0000054-1491911889:451187..451368Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1491911889:450158..450201TCONS_00005651-exon-sc0000054-1491911889:450158..450201Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1491911889:449730..449877TCONS_00005651-exon-sc0000054-1491911889:449730..449877Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1491911889:448867..449115TCONS_00005651-exon-sc0000054-1491911889:448867..449115Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1491911889:448279..448404TCONS_00005651-exon-sc0000054-1491911889:448279..448404Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1491911889:447787..447879TCONS_00005651-exon-sc0000054-1491911889:447787..447879Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1491911889:447071..447151TCONS_00005651-exon-sc0000054-1491911889:447071..447151Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1491911889:445516..445695TCONS_00005651-exon-sc0000054-1491911889:445516..445695Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1491911889:444818..444895TCONS_00005651-exon-sc0000054-1491911889:444818..444895Clytia hemisphaericaexon
TCONS_00005651-exon-sc0000054-1491911889:443912..444260TCONS_00005651-exon-sc0000054-1491911889:443912..444260Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:443912..453311 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.2359	20.2747	6.47689	14.1809	1.65639e-05	3.49402e-08	0.00302441	6.97282e-06	22.2893	26.9919	32.2727	37.1709	34.6365	49.7473	36.635	40.8626	25.6797	31.5321	32.7496	22.0609	19.4805	22.8564	28.7376	33.1172	0.0501104	2.3601e-06	11.7955	15.4334	13.241	27.3558
Blast
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BLAST of TCONS_00005651 vs. Swiss-Prot (Human)
Match: BRE1B (E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4)

HSP 1 Score: 211.46 bits (537), Expect = 4.977e-58
Identity = 164/516 (31.78%), Postives = 274/516 (53.10%), Query Frame = 3 
Query:   93 VNLGPISTEEELDLKVVKIQNAKLYSKLEEKNAQEEESKVRFAKLERLRNNDQNIISSMNVAWNQLDQDVNNLLK-----------------RFGDVSEDEALA------------------MSETTVAFLEKLSNRTTKGTSEEIQKRVTHSSSIIERLVVRIEKNMKRNKELIETLKNDXXXXXXXXXXXXXXGDQNDFEDERNDISSTELELRQELSLTKSENLKLHDSMTSLQDKYRTMSTEYSEMKDRLATMQKENAELKAKQEDMEYDLQRATKQFEKLIKKLNETHEQXXXXXXXXXXXXXXXXXXXXXXXXXXHVKLVKDTPEDIKAEMDAKDELAXXXXXXXXXXXXXXXXXHVEHDKLKQQLMQLPDEVIINHTKYKMLQTQFNLCYNDAQEIRRHCEEARKIVVNNRSQHIQQQEHYEMEIQTQRKKVRAEISQLERALAESRKDLELLRVEYEHNMKAHEQIGPMAKEMRHLINSLQNHNQQLKGEVSRYKKKLTDVEKKLGDI 1535
            + LG IS+ EE+DLKV++ +N KL  +LE++ A E+E + R  KLE+ +  D   +  +N  W QLD+ V  LL+                 + G   +   L                   +SE  +AF+  L   +++    E+Q R+  S + + R+V   ++  +R +EL + + +               GD      E     + EL           EN +L D  T LQ+K+  +S EYSE++D++ + + +  E++   ED+++D+++  K+ +KL K L E  EQ +     S + SG              + L     E + AE++   ELAN+R+ EL+KLQ   Q     +++LK  L  LP+EV+    +Y+MLQ QF+L YN++ +++   +EAR +++  ++ H++  EH E +    +KK+R E+ QLE  LA+ RK+ E+LR+E+E N+ A+EQ GP+ +EMRHLI+SLQNHN QLKG+  RYK+KL +V+ ++G +
Sbjct:   36 IRLGGISSTEEMDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLRCHESQGELSSAPEAPGTQEGPTCDGTPLPEPGTSELRDPLLMQLRPPLSEPALAFVVALGASSSEEVELELQGRMEFSKAAVSRVVEASDRLQRRVEELCQRVYS--------------RGDSEPL-SEAAQAHTREL---------GRENRRLQDLATQLQEKHHRISLEYSELQDKVTSAETKVLEMETTVEDLQWDIEKLRKREQKLNKHLAEALEQLNSGYYVSGSSSGFQGG---------QITLSMQKFEMLNAELEENQELANSRMAELEKLQAELQGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQFSLLYNESLQVKTQLDEARGLLLATKNSHLRHIEHMESDELGLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIGKL 518
The following BLAST results are available for this feature:
BLAST of TCONS_00005651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRE1B4.977e-5831.78E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens ... [more]
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