TCONS_00005653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005653
Unique NameTCONS_00005653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1909

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005653 ID=TCONS_00005653|Name=TCONS_00005653|organism=Clytia hemisphaerica|type=transcript|length=1909bp
AAATCCTTTACTCAACATCTGTTTTAGTCCAGAGAAAAAATGAGTTCAAA
GAGAGGTGCCAGCGGGGATGGATCAGAGCCGCCATCAAAGAAGAAAGCTT
TTTTGCTGTCACAAACAGCTGTAAATCTTGGACCCATATCGACTGAgGAA
GAACTTGACTTGAAAgttgtcaaaattcaaaatgccaAATTGTACTCAAA
ATTGGAAGAGAAGAACGCACAAGAAGAAGAGTCCAAAGTGCGATTCGCCA
AATTGGAACGCCTTCGTAACAATGATCAGAATATTATCTCTTCAATGAAT
GTTGCTTGGAACCAGCTTGATCAAGATGTGAACAACTTGCTCAAAAGGTT
TGGTGATGTCTCTGAAGATGAAGCACTAGctATGAGTGAAACAACGGTAG
CATTCCTGGAGAAACTATCCAATCGAACGACCAAAGGAACATCAGAAGAA
ATCCAAAAGAGAGTCACACACTCTAGTTCTATAATCGAACGTTTGGTCGT
TAGAATAGAGAAAAATATGAAGAGAAATAAAGAACTTATTGAAACGCTGA
AGAATGACAAGaaggaggaaaagaaatctCTGGGCgagaaaaaagttgaa
ggagATCAAAATGATTTTGAGGACGAGAGGAACGACATTTCATCAACTGA
GTTGGAATTGAGACAAGAATTGTCGTTGACCaagagtgaaaatttgaaat
tgcaCGATTCGATGACATCCCTACAGGACAAGTACCGGACCATGTCAACT
GAGTATTCCGAAATGAAAGATAGACTAGCGACCATGCAAAAAGAGAACGC
TGAACTCAAAGCCAAACAAGAAGATATGGAGTATGACTTGCAACGGGCTA
CCAAACAATTCGAAAAACTAATCAAGAAATTGAACGAGACTCACGAACAG
GGTTCCAAGTCTAGTGGAGGCAGTAGCGCGGTGAGCGGTTCTTCGCAACA
AGCAGTAAGCAGTGGCGGCGGTGGTGGACACGTGAAGCTGGTCAAAGATA
CTcctGAAGATATTAAAGCAGAGATGGATGCTAAAGACGAGTTAGCCAAC
AACCGTCTTGAAGAATTGAAGAAGTTACAAGAACTCTATCAAAACCTGCA
TGTTGAGCACGACAAGTTGAAGCAACAGCTGATGCAACTTCCAGACGAAG
TTATCATCAATCACACGAAATACAAAATGTTGCAAACGCAATTCAATTTG
TGTTACAATGACGCACAAGAGATACGGCGACATTGCGAAGAAGCACGCAA
GATAGTGGTCAACAACAGAAGCCAACACATACAACAACAAGAACATTACG
AGATGGAGATTCAAACACAGCGCAAAAAAGTACGCGCAGAAATCTCTCAA
CTTGAGAGAGCGTTGGCTGAATCAAGAAAGGATTTGGAATTGCTGAGAGT
AGAGTATGAACACAATATGAAAGCCCACGAACAAATTGGACCAATGGCTA
AAGAAATGAGACATCTCATCAATAGTTTACAGaaccACAACCAACAACTG
AAAGGAGAAGTATCACGGTACAAAAAGAAGTTGACCGATGTTGAAAAGAA
ACTAGGAGACATTGATAAAACAAAATCGCCTGACAAGGAGCGCGACATCA
GCGATTACATCGATCTCATCGACGCTCCCAACGCACCTACGTCCGCTTCT
TCATCGCGGTCGGAGTCGAGTCATTCGAGCGATGAAGGGGACTACGATGA
CGTCAAAATGTTAAGGACCAAACTGAAGTTAGTACATATGGTTTATATTA
TACCTTTTCATTTTAAGTTTGTTATTTTTGACGAGgactaaatttgacaa
atttaaaCAACatcatagcttcagccaggtttctagctccccccaacaaa
gtaaggtccccccaacaatttagctccccccaaaaaattgccttgtgcta
ggtccccta
Run BLAST on NCBI

transcript from alignment at sc0000054:443912..457486-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005653 ID=TCONS_00005653|Name=TCONS_00005653|organism=Clytia hemisphaerica|type=transcript|length=13575bp|location=Sequence derived from alignment at sc0000054:443912..457486- (Clytia hemisphaerica)
AAATCCTTTACTCAACATCTGTTTTAGTCCAGAGGTTCACTTTCGTTCCA
CATCTTCTTCTAATTTTTGCATATCAAATAAGTTTGAAAATGATTGTCAA
CAACAACAAAGTGCTCTACCAGAAGGAGCCTTATAACAAAACAAAAATTC
AAAATTTTATTTTTTGTAGTTTCTTGCGTACAATCATCAGCTACATACAA
GTTAGATCTTTGTGTCTGTAGCTGGCGCTTGTACGCAAGAAACTTTAAAG
TACTACAAAAAATGAAGTTTTGAATTTTTGTTTTGTTAATTTTTGCATAA
GGGCTACTTAGACTACACAATATATTGACAAACAATATTTGACAATATCG
TTTTCGGACCGTAATGTACGATGTAAATAACAGGTGCTCTATTATGAAAA
GGAATTTTCCTTCTGTAAACAATCCCCTTATATTGTTGGNTATTTCTTTA
GATATAGAAAAGAAAAGTACTGTTTTTACAAGTGAACAAAGATGTTTTAT
TCTGACGTCAAAAATGAATCATTCATCTTTTTCAATAGGCCTTTGCAGTA
TGTGACCAAGCACCATCTTGCAAAAGAATTTAATCATTGCCTGCCAAGCT
ACTCATATTAGGTAGCATCTTGTCGAGAAGCTCCTTTTATTAGTACTCCG
AGTTAATCTTGACACCCTTCTCAACAAAGAAAACCGATGTCTATTGAAGT
TTTGGGACACCTTGGCTAACAGATCAATTCTTCAAGTTCCTCTGCAATAT
CTTCAGTTTTGGCCATACCCCGTACTTATAGGAATGCGCTCAATATCACC
AGTTTTATCAATTTTGTTGATCAAACACCTCAATCCACCTTTTTTCCAGC
CTTTGTTAGGGAATTCACTCAACAGTCTCTTTATGCCATAGTTCTTGTCT
TGTCGGTAGTGTTTGATGACAATTTTGTCTTCTTTACTAAACGGCATTTT
GAAAAATGAACAACTCTTGGTTACTAGTCCCTGTTTTGAACAGTTCCACA
CTGCCATGTTTTCTTTCTTAAATAGCAATGTAGCCAATTCTTTACAATTT
ATTTTTGGCAAGCTTTTTCAAAGTTTAGGAGATGAGTAAAAGACGATACA
GAGAATTGCCATCCCATGTTTTGTCATGATAGTCCCAAGTTAGAGCAGTT
GGCGGTACACAAGAAAAAGCTGGAAAAGTTCATTTAAATCCTTTACTCAA
CATCTGTTTTAGTCCAGAGGTTCACTTTCGTTCCACATCTTCTTCTAATT
TTTGCATATCAAATAAGTTTGAAAATGATTGTCAACAACAACAAAGTGCT
CTACCAGAAGGAGCCTTATAACAAAACAAAAATTCAAAATTTTATTTTTT
GTAGTTTCTTGCGTACAATCATCAGCTACATACAAGTTAGATCTTTGTGT
CTGTAGCTGGCGCTTGTACGCAAGAAACTTTAAAGTACTACAAAAAATGA
AGTTTTGAATTTTTGTTTTGTTAATTTTTGCATAAGGGCTACTTAGACTA
CACAATATATTGACAAACAATATTTGACAATATCGTTTTCGGACCGTAAT
GTACGATGTAAATAACAGGTGCTCTATTATGAAAAGGAATTTTCCTTCTG
TAAACAATCCCCTTATATTGTTGGAAAATTGTAAATCGAGCTGACAATAT
ATTGCAGACACCTGACAATATATTGTGTAGTGTATGTAGCCCTATAGACA
TGTGTCTGCCATTTTGTTTAATTTTCTTTATGCTCACTCAAACTTTTTCT
AAATTAATATTTCCGATCTTCCAAACAAAACGTGGGATTTAGGTCATGTG
ATTACATAGTTCCGATCTTCTAATCAAAAGGCAGGATTACATGACTACCG
ATGTCTTCAACATCATTGAATTTTTTAATTGCAGTGTGCTAGAAATTCAA
AGATGGTGGCGAAATGGTGTGTAGGGAAGGTTTTATAGGCAATTTCAGAT
GATGGAACTGGGAAATTTTAAAAGAAAACAAAGTAATGAACTTTTATTAA
AATAATGAACTTTTTTAACCGGCAGCTTGAAGGCATACAGGCGGTCGACA
TTAAACCGGTTCATTAACTTCCCTCGCCTAATTAATCCTGTAATTCTGTG
AAAAAGTTTAGAAATTATCTCCATTATTTTTTTAATATGAACTATGCGAG
CTGTAGGAAAAATAAAGATGGATGATTCATCAATCAGTGAATCTCTAAAG
AGGATTGTCAGAGTTAGATCGGAGATGTTGACATTAGACCAACTGCAGTA
TGTTTTCCGCAGTATACAATAAGTTGATATGTTATGATTTGAAACATTGG
TTGGAAAATGGCTAGCAAAAAAAACTTCATTGCAAACTTTAATGCAAAGG
GACTTTTGAACCTGTGTAGCCAAATAGGGGGTTTAACGTTAAAGCTGGGA
AAAAAGAAGCAAGGCGGCTTGAAATGATGATTTCAAGCAAGTGGGTTGAA
CAAAATGTCTGTTTAGGGTTGCTTTAGCTTATTTCTGGGTCAAATAAGAA
TCTATTTGGGTTAGACATTTTCGATGTTCAACCATTTATTTCAAGCCCTG
AGATGAAAGGGGTTAGATTAGGGTTGAGCTGAATGAGATGAGATCCATTT
TTAGGCTGTCTCTTGATCCTTTGACCACTATGTAATACTTGAAAAACTAG
AATTGTTGAACTAGGTTCTGCTAATTTGTTTAGCTTTATTAAAAGACCGG
TTCAATTATTGGTCTGACACAATTAACCTAAGGGTTCTCTTGTCTTTTAT
TGATCAGAGCACTATATATTGTGGAAATTAGACAGAACACGCTGAAAAAG
CTGAAATTGCCATTGTATGGCTTGTGTTAGACACTAAGTTACTGTCACTT
TCTTCTTCAAGCACTGAAACACCACAGTAAATGGGCTTATCATATTACAC
TGTCACACCTAAATGAGACATTAGCATGTCATTAGGGTGGAGTAAAACCG
CCATTTTTTTGGTGAAACTAGAAAATGTGTTTTTTAAACCTATATGTGAG
GCATTCTGTGCTATTTTCAATGAAGTCCAAATTGATTGATTTGCATTACA
ATTAAAGAATATATATATTACAATTGCTAATTAGGTTTTTAATTTTTTTT
AGCTGTACTAAGAAAAGAGCCCAAGTAATTTAGTTTGCAGTCAGAGGCGA
CCTGAAGACCCCTTTTTCGATAGCTATCTACTCGAAGGGTAGGGGTGGGT
GCCACTCTTTCTCCCTAGATTGATCCATTTACCCTTGATCCTTCTCTTAA
TTACTGAGCATCTAGTTGAGACGCATCAAGTTCACTGTGTGTTCTACCAC
TGCCCTACGTTTGCTAAATTTAACAAAGATGAAGCTAGACTTGTCTCAAA
CAATAAAGAATTATGAATTGATTATTTTTGTTAATGAGTGAACAAATATA
TTGAAAATTGATTTGCTTTGTCCAATCAATATCCACCAAGTTTGAATCAA
GTTTGAATATTTTGAAATACCCAATTTTTTTGTTGAATATCTGCTTATTA
TTACAACTATTTTAACAATAAATGTCTGAAATTTTCAGAGTTGGAAGTCT
TTAATAAGGTCTCAAAACAAACACATTTTAAATCATTGTCATTCAAAAAT
TCTTTATATTTCATTATAGAAAAAATGAGTTCAAAGAGAGGTGCCAGCGG
GGATGGATCAGAGCCGCCATCAAAGAAGAAAGCTTTTTTGCTGTCACAAA
CAGCTGTAAATCTTGGACCCATATCGACTGAGGTGATTTTTAATTTTTCT
CAAAATATAGCCATAACGTTATATTATTGTGTTATTATAGAAATTATTTT
CGCGGAAATATGATGCTAAAGTTCCTGTGACTATANATCAAGTTCACTGT
GTGTTCTACCACTGCCCTACGTTTGCTAAATTTAACAAAGATGAAGCTAG
ACTTGTCTCAAACAATAAAGAATTATGAATTGATTATTTTTGTTAATGAG
TGAACAAATATATTGAAAATTGATTTGCTTTGTCCAATCAATATCCACCA
AGTTTGAATCAAGTTTGAATATTTTGAAATACCCAATTTTTTTGTTGAAT
ATCTGCTTATTATTACAACTATTTTAACAATAAATGTCTGAAATTTTCAG
AGTTGGAAGTCTTTAATAAGGTCTCAAAACAAACACATTTTAAATCATTG
TCATTCAAAAATTCTTTATATTTCATTATAGAAAAAATGAGTTCAAAGAG
AGGTGCCAGCGGGGATGGATCAGAGCCGCCATCAAAGAAGAAAGCTTTTT
TGCTGTCACAAACAGCTGTAAATCTTGGACCCATATCGACTGAGGTGATT
TTGAATTTTTCTCAAAATATAGCCATAATGTTATATTATTGTGTTATTAT
AGAAATTATTTTCGCGGAAATATGATGCTAAAGTTCCTGTGACTATTTTT
AGTGACTTAATCTTCTTTTCTTATCGGTAAGAAGTATTGTAGTTTCTTCT
TCATGGGTATTTTTGGAGAAATTAGCTACACATTGTATAACATATACATA
TCTGTTTCATTTTCAATGTTAAAATAAGTCAACTTTGAACTGAACAAAGA
ATCTCTGCTCATTCGAGGCCATTGCTATTCACATTCTTGACTACAAATTT
GGTAGCGTTAAACTTTGGTATTTTGAGATCATAATGAATGATAATATAAT
GGTTTAAGATGTTTATTTCAATCTCATTTCTGCTGTAGGAAGAACTTGAC
TTGAAAGTTGTCAAAATTCAAAATGCCAAATTGTACTCAAAATTGGAAGA
GAAGAACGCACAAGAAGAAGAGTCCAAAGTGCGATTCGCCAAATTGGAAC
GCCTTCGTAACAATGATCAGAATATTATCTCTTCAATGAATGTTGCTTGG
AACCAGGTACAGGATTTTTTCCTCAGTTTGACATATTTTACTTTTCAAAC
TTTTTGTTCTAATATTGTTGAATTTTCCCCATATTGTTTTTGTATATTTT
CAACTGCAATTAACGAACGGACGAAATTTTTGTTTCTTGAGTTATTAATT
TCCATTTGATTTTATGTGTTTAAGCTGGTTTAAGTAGCTATACATTACCA
CAGAACCCATTTTCCGAGACCATCCTATTCCATTTGTTACGAATTACCAA
TGTTGCAAATTAAAATAATAACTATGTCTCTCTTTTCTCTTTTCCATTAG
CTTGATCAAGATGTGAACAACTTGCTCAAAAGGTTTGGTGATGTCTCTGA
AGATGAAGCACTAGGTATGGTGTTGTTTACTTTTACAATGATTTTTGGCA
TTTCTATATGGTTTTATTCTTTGGAAATGTTTGCAGAAACCACATTATAG
TGTTTTGGTCTTTAATAACATTCCTTGAAAGTGTGCAGTGGGCCAAAACA
CTTTAATTTGACCCCCTACATACAACACTGCTCAATATCTTGTCAATATT
TCTGAGATGAAAAACACAATGATAGTGGTAATAAAGAACTAATAAAAGGT
CGTGTCTTGATAATTTCATGGGGATTTCGTTTGAAAACCAAAGTACAAAG
TAAAAAATTTCCCTTCTAATCGCTTAATAATTTTACATTAGAACCTTGTT
TCATACCCGTCTTTCTGACAACTTGATATCGTTCTTAAAGGGATAATCAG
ATGGTTCGAGATATTTAGATTGCAGAAACCTTCTGTGGTCCTTAGTAAAA
CCTCAGAGTATTTTTGTGTAACAATTTTCCAAAATCGAGATATCAAAATT
TGAAATTTTTGAAAATGGGTTCTTACGTTGAAATTCTATTGTTTTCATCC
TAAAAGTCAAAAACTTGTAACTTGAATATCTCGACTTTGGAAAATAGTAA
GGCAAAATTATTTCGAGATTTTGCTCAGGACAATAGAAGGATCCCACATG
CCAAATATTACAAACCATCTGAGTATCCCTTTAAGACCATGTTCAAACGT
ACCGGTTTCTGAAATAAAGCCATTCTATTGGTTAGAAATGACGTAAAAAT
TGAATTTAACCAATAGAATGAATGGATTCATTTCGTTTCTTCACCGTAGA
CACCGTAACCCGAAGCGTGTGAATGTAGTCTTAAACTTAAATAANTTTCA
CCGTAGACACCGTAACCCGAAGCGTGTGAATGTAGTCTTAAACTTAAATA
TTGCTTTCTTTTGTTTAGCTATGAGTGAAACAACGGTAGCATTCCTGGAG
AAACTATCCAATCGAACGACCAAAGGAACATCAGAAGAAATCCAAAAGAG
AGTCACACACTCTAGTTCTATAATCGAACGTTTGGTCGTTAGAATAGAGA
AAAATATGAAGAGAAATAAAGAACTTATTGAAACGCTGAAGAATGACAAG
GTACTTTATCGGGGAAAAAATGTCGGAGTTTTATTTCGTGGGGGAAAAAT
TTCGTCACTGTCACGCGTTTATTAGTTACCTGAGAGTACAGTGGAACCTC
TAATTAGCGGACACCATCGGGGAAAGGGGTTAGTGTCCGCTAATTAGAAG
TGTCCGCCTTTTAGAAACTTTTGATCTCGGAGCTCCAATTTTGAAATTAG
GCCATCCCAGGGTGTTAAAAATACAAAATTGGGGTCTAAAGTACTTATCT
GCAGACACTAGGCCAAAGAAGAACAAGAGAAAGGTTATTAAAACAGAGCT
CGAGTGACTGGCAAGAGGTTAAATCGAGGTAGTGGGTACGGACTTAAGTA
CCAGTGATTTATGATTCCTTTGGTCTACCTAAGTTTGTTGAATGGGTCAA
GGGGAACTGGAAATTTGTAGAAATAATTTGAATAATAAGACTAATAAGTG
CTTGAAATAAAAATATCTAAAATTTTTTTTTTCGATTTTGGACGTCTGTG
CCCCGTTTGATATTCAATGTCCGCTAATTGGAGAGCTAAAATAGGGGTTT
TGGCCATTTCGTGCGAAAAAAATTTGTCCGCTAATCAGAGGGTCCGCTAA
TTCAGTGTCCGCCTTTTAGAAACTTTTTTATGAGGTTTTGACTAGGAAAC
GGCCGGGGAAATGAAATTGTCTGCTAATCAGAGGTGTCCGCCTTTTAGAG
CGTCCGTTAATTAGAGGTTTTACTGTACTATCCTTTTGAACGCTGATTTA
CAGAGAGAACTTTTGGGTTTCATTAGAATATTGAAGATCTTTCATGTGAG
ATGTAGAGTCCTTTTCGTGTATATATTTTGCGTTGAAATGAATTGAAAAA
CAGCAATAAGGCTTTTGATGCGGGGTTCTTTCACAATATTCAGAAATTGG
TGCCCTGGTGTTGGATTTTCATAATCCAAGAAGATTTCAATATTTTGATT
TTTGGAATATTTTAATTCTTGGAATTTTCTTCTAGAAGGAGGAAAAGAAA
TCTCTGGGCGAGAAAAAAGTTGAAGGAGAGTAAGTACTTTATATTTTGTA
TAAAATAATATCTTTCCATTTAAAATTACTTTTAGTTTATTCAACGACTT
AATGTTTGTTTTTTCCAATTTTACCAAACTATCATTTACTCATTAAATTA
AAGGTGCAACACTGCAAATTTGATTCTAAACAAGTCCTCAAAACAAGAAG
AAAAGAAGACACTGTGACGTGCGGCAAAGAATTTGAAAATTTCCTTAGAT
GTCGGTTTTGTATAGACAATCTTCCCAAGAAAAATGTTTTAAACATAATT
CTTTTTCAGTCAAAATGATTTTGAGGACGAGAGGAACGACATTTCATCAA
CTGAGTTGGAATTGAGACAAGAATTGTCGTTGACCAAGAGTGAAAATTTG
AAATTGCACGATTCGATGACATCCCTACAGGACAAGTACCGGACCATGTC
AACTGAGGTAAAATTCATTCATTCATTCATTCATTCAATACTTTATTCAT
TCATTCATTCATTCATTCAATAATTTATTCATTCATTCATTCAAAAATTT
ATTCATTCATTCATTCAATAATTTATTCATTCATTCATTCAATAATTTAT
TCATTCATTCATTCAATAATTTATTCATTCATTCATTCAATAATTTATTC
ATTCATCCGTTCATTCAAAGAAGTTCTGGTCAGTCCTCGTGTTATTCTAG
AGATCTGGCTCTCGGTAATCTCCCCTAAAGATAGTGTCGGAACAAAATAT
TTTCAACTTTTCAATGCTAAGTTGGTAGAATGCTTAAAAGCTTGGTACCC
ACTGAAGAAGATAAGTTAGCCGCGAAACACTTGTTCACAAAAAATGAATC
CAGATATCTGGAATTAAATATAGAATAGAACCAAAAAAATTGATAAGCGA
CGGAGACTGATGGAGAATTACAATGTCTTCATTTTTTATTCCTCAATTAT
TTTCACCATATTGCAAATCGTCTAGATTCATTTCGCGATTCACTTATTTT
TTAAGTGGACACCCAGCTTTTTCAAAAACTTTTCCCCCCGAACAAAATTT
CTCTTTTTTTAATCTTTCAAGTATTCCGAAATGAAAGATAGACTAGCGAC
CATGCAAAAAGAGAACGCTGAACTCAAAGCCAAACAAGAAGATATGGAGT
ATGACTTGCAACGGGCTACCAAACAATTCGAAAAACTAATCAAGAAATTG
AACGAGACTCACGAACAGGGTTCCAAGTCTAGTGGAGGCAGTAGCGCGGT
GAGCGGTTCTTCGCAACAAGCAGTAAGCAGTGGCGGCGGTGGTGGACACG
TGAAGCTGGTCAAAGATACTGTAAGCCTTTTTCTTTGCATAGATATTTAG
TAGAGATGTTTAACACGCACGGGGAACACAAATTTGCTCAAGTTATTGAA
ATTTCGAGTTGTGAAGTACGGTTTATAAGGTTGGGCTTAAAAAATTGTTG
GTTTGCCGTCACCCAAACCCTAGATTTTGGAGGTGGGTCGGTCGGAAAAT
TTTTTTATCTTGTTCATCCATGGAATTTTTGTCTGCATTTTGTAATTTTT
GAAGAAGGAAAAATTCGATTTGTCGAAATAGCAATAAAAGTCGGAAAGTT
TAAAGAAGAATCGGTCGGCTGACGGTAAACCAACATCAAGTCCAGCCTAA
GGCATTGTTAACCTGGAGGAAGGATAGAAAACTCCGAGTTGAGGAGATAT
TCGAATTAAAGGAAACTCCATTGTATCTTTTTTGATGTCATACTTTTTTC
ACCCCTTTTTTCAATTTTTTTTTTATTTTAAGCCTGAAGATATTAAAGCA
GAGATGGATGCTAAAGACGAGTTAGCCAACAACCGTCTTGAAGAATTGAA
GAAGTTACAAGAACTCTATCAAAACCTGCATGTTGAGCACGACAAGTTGA
AGCAACAGGTGTGTAAAAACTAATGAGAAGATTTTTAGTTTAAAGTTATT
TGAAAAATTTCCATTCAAGTCTTAACTTGAGAGCTCTAAATGTTTCCAAT
TACTAGGTAAGAATTTTTTTAATCAAAAAACTCTCAGCTGCCAAATTAAC
GGGAGGGGGGTTGCATGGAAAATTCAAATTTTAATAGACGGGAGGGATGT
AATTGCAAGTTGGGGTTGGAAATTATTTCTCTAAATAACCCTAAAATAAG
GTAATTATAGACTAGTAGAATAAGCCTGTTTGGAGCAAAATATAAGGGAC
TCTTTTTTTGACAGCTGAAAATATTTTTAAAGATCAACGAACGGAAGGCC
CGTTTATTAGGCACCTAAAAGTAAAAATAAAAATGTGTTCGTTTGTTTCC
ACTACAGCTGATGCAACTTCCAGACGAAGTTATCATCAATCACACGAAAT
ACAAAATGTTGCAAACGCAATTCAATTTGTGTTACAATGACGCACAAGAG
GTATGAACCATTATTTTTTAAGCCCGAAGAGCTAGGGAGGAATATTCAAC
CTTTCTCAAGGCAAGAAAAATCGAAGCCTTGAGATTTGTCCTGCTTTTGG
AAATGACAGATTGAATTTAGGAATTTCTTTGTTTCCACGCGTCATATTTT
TTTTCAAANAAATCCCGAAGAGCTAGGGAGGAATATTTAACCTTTCTCAA
GGCAAGAAAAATCGAAGCCTTGAGATTTGTCCTGCTTTTGGAAATGACAG
ATTGAATTTAGGAATTTCTTTGTTTCCACGCGTCATATTTTTTTTCAAAA
TCTGGCGATATATATTTTACTGGCAATTTTGCGTTTGTGTGAAATCCACG
CGGGGTGCACGTTTTAGATTGGGAATAGTAAGTTGTTTCATTTTCCACCC
AAGAGTTTCATCTCAATGGTATGAACAGAAGAACCTTCTTTCCGCTGGTT
TAAAATGAAGAAAGATTCGAATCCTAAAAGCTCCAATCAGCAATATATTC
AGTATCAATACAATAATATGCACTGAGATACTATTTCCTAAATTTTGGAC
ATTGCTCCTTCTAAATTTCTGATCGCTGATCACTAAAATTCATGCTTTAT
CTCATCATTATTTCCCTCTTCTCTAAATCTTACAGATACGGCGACATTGC
GAAGAAGCACGCAAGATAGTGGTCAACAACAGAAGCCAACACATACAACA
ACAAGAACATTACGAGGTATAAACTCTATTCCTTTTCCATCCTTAAGTAA
GTAAGTATGTCTGCAACCGCAGTCGGAGGTGACACGAAGGCTCCTCTTTC
GATAGCTATTGACCCGAAGCCTCCTCATTCGATAGCAATTACCCGAAGGC
TCCTCTTTTGATAACTATTAACCCGAAGGTAGGGGAGGGCGCCACTCTTT
TTCCCTGGATTTCTCCACTTACCCTTGACCCTCTTTTTAATTTCTGAGCA
TCAAGCAGAGAGGCATCAAGTACCATTTTGAGAATCTTTGGTATGACCCG
GCTGGGGTTCAAACTCACAACCTCCTCACGAACTGTAGCCGGATGCTCTA
CCACTGCACATCCTTAAAATTATCAACATTAAGGGTACCACTTTTAAAAA
ACTCCGATCAAAGATTTTACTTGAACGAAATCGAGAAACTGTCCAGGGTA
TATAAAGGTCAGTGGGTAGTAATTTATTCCATTTTCCTCATGACCCTTAT
TGAGTTATCATTTGAAAATGTCAGATGAACAAAAAAAATTGTATGAAAAA
TTTCCACGTTTGATATTACTTTTTCCTGTGAATATTGCTTCCATCTTTCA
TAAAATGAAGCACCTAAAAGCAACGCATCACTGGGATAAAACCACCTACC
TCTTCTTTGTATTCATGATAAAATGCGGTTAAGTAAATCGGTAAAATCAC
GACAACGAACGAAAATTTAGCAGGCTAGTGAGTTTCAACCAATCAAATTT
CGTATTTTCACTAGCCTTATACATTTTTCGTCCGTCGTCGTGATTATCCT
TGTATGCTTAACCTCAGTAATATTGCAATGTCTTCAACGGACCCAACAGC
TAATTGGTTGAAAGTGACGTATTGACTGATTATACGTCACTAACAACCAA
TCAGCTGTTGGGTTCGTGATGTAATGTCAGAAGACATTGCAATGTTGCAT
ATCATGAATTACTTCTCGTGAGCATACCTCTGGTAGCCTATTCAGACAGA
GCTCCTCCACTATTGCTCGAAAGAAAAATGAAGCCTTCACATTAGCCCGA
TCTGAATTAAAGGTTAAAAAAGTCGATCAGCTTTTATTGAATACACCTTT
TCGACCGTAGTAGTGGGCATTTTTATCCGTTTTACCACCCTAAAACCGTC
CCAGTCTTTTTTTCACCCCTAAAAACAATAGAGAAAAGTGTAAGAAAGGA
TTTGATCGAGTTTAGGGTGGTAAATTAAATAATAAAGTGGTAAGCGCCTG
ACTGTGCGACTACGATCGAAAAGGTGTATTTGCTTGTTACTTTTTATCTC
CAAGCAAAAAAATAATTGAATGGTGGCGTTCCATATTTAGGACTGCCATA
AATTGAATTGATCCCGTCTCACTTATTGCATGTTTTTCTAGATGGAGATT
CAAACACAGCGCAAAAAAGTACGCGCAGAAATCTCTCAACTTGAGAGAGC
GTTGGCTGAATCAAGAAAGGATTTGGAATTGCTGAGAGTAGAGTATGAAC
ACAATATGAAAGCCCACGAACAAATTGGACCAATGGCTAAAGAAATGAGA
CATCTCATCAATAGTTTACAGGTATTGAAGCTGTTATGCGAATTCGGACC
CAGTCCTTCAGTTCGGTGTTCTATGATTCTGATAGCGCTCACAAAATGAT
ATCATATCACGTCACTCAGTAAAATCAAAATTTGGTGCAAGTGGCTCTGG
GTAAGAGATATCCGATGATGTTTGTTATTTTTACAATGTCAAAAATATTT
TATTGTATTTTTGCCTCAATCCTTTTTTGTATTTACTCTCACAAAAAACG
GATATGCTGCTCTTGAAAAAAACTCCTTAGTCTATTTTTCTTTGACTTCC
AAGAGTTCCTGCTTAACGTTATACCTAGTATCGAACTTGAGTGCAACTGG
TTTGGTTTAAAGCCGTGACTGCACGGATCTCTAAAGTATTTTAGAGCGTT
CTGGCGTGTAGGGAACCTTTCAGTACATAATTACCGAATGATTGATTAAT
TTTGTTTTGAATATTAAGCCACAGATGACGTCTTATATGTGCTAGATGAA
ACGCTTGAAATTGCTGACTCGTGAAATTTAATTCAAATGAAATTTTTGAA
ATCAGATTTCATTTTTGAATACCCTGTAAATCTGCTATTTATGGCAAAAA
TTAGCTTGATTAGTTTGATTGCCGTTGTTTTTTCTTTTTAGAACCACAAC
CAACAACTGAAAGGAGAAGTATCACGGTACAAAAAGAAGTTGACCGATGT
TGAAAAGAAACTAGGAGACGTATGTAGCACACTAAGATAAATGTTAATTT
TCGCCTTCCGGGGTGTTATTCAAATAATGACCTTGTTCTTGTCAACTTTT
AATGCCTTTTCAAGGACACAGATTTAGGTTACTCGTAGTATTTTGCAACA
TTTTTGCATGACACTTAAAAACATTAGCGAGATTATGTATCTGGAATTCT
CTATGGCTACGGCTAAAGCGGCGAGGGAAATGGCGAGTAAGGCAAGTAAT
GGCGGGTGAAAGCAAGTTCGATATTTGACGTACGGCATTATGTCGACTTT
GCTTATACGGTGTTTTGGTGTTTTTCCCGTACAGAGCAAAGTAGACAACG
ACATATCGCCTTTGGTGACGACCCGCATGGGCAGCCCCGCAACTGTAGCC
GTAGAATATCTCCGATACATAATCTCGCTATTTTCAGCCACAGTGCATAG
TGGCCAGCTTCTGATTAACCTCATCCAAACTTTATTTCATCAATCTCAAA
TTGTTTTGATAGTGGAAAATATACAGATGGGATCTGAATAATACACTTGC
TAAAGAACCATGTGCTATATTAACAGATTGATAAAACAAAATCGCCTGAC
AAGGAGCGCGACATCAGCGATTACATCGATCTCATCGACGCTCCCAACGC
ACCTACGTCCGCTTCTTCATCGCGGTCGGAGTCGAGTCATTCGAGCGATG
AAGGGGACTACGATGACGTCAAAATGTTAAGGACCAAACTGAAGTTAGTA
CATATGGTTTATATTATACCTTTTCATTTTAAGTTTGTTATTTTTGACGA
GGACTAAATTTGACAAATTTAAACAACATCATAGCTTCAGCCAGGTTTCT
AGCTCCCCCCAACAAAGTAAGGTCCCCCCAACAATTTAGCTCCCCCCAAA
AAATTGCCTTGTGCTAGGTCCCCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003195XLOC_003195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005653-exon-sc0000054-1575043694:457453..457486TCONS_00005653-exon-sc0000054-1575043694:457453..457486Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1575043694:453755..453867TCONS_00005653-exon-sc0000054-1575043694:453755..453867Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1575043694:452631..452798TCONS_00005653-exon-sc0000054-1575043694:452631..452798Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1575043694:452273..452336TCONS_00005653-exon-sc0000054-1575043694:452273..452336Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1575043694:451187..451368TCONS_00005653-exon-sc0000054-1575043694:451187..451368Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1575043694:450158..450201TCONS_00005653-exon-sc0000054-1575043694:450158..450201Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1575043694:449730..449877TCONS_00005653-exon-sc0000054-1575043694:449730..449877Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1575043694:448867..449115TCONS_00005653-exon-sc0000054-1575043694:448867..449115Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1575043694:448279..448404TCONS_00005653-exon-sc0000054-1575043694:448279..448404Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1575043694:447787..447879TCONS_00005653-exon-sc0000054-1575043694:447787..447879Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1575043694:447071..447151TCONS_00005653-exon-sc0000054-1575043694:447071..447151Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1575043694:445516..445695TCONS_00005653-exon-sc0000054-1575043694:445516..445695Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1575043694:444818..444895TCONS_00005653-exon-sc0000054-1575043694:444818..444895Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1575043694:443912..444260TCONS_00005653-exon-sc0000054-1575043694:443912..444260Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1510915933:457453..457486TCONS_00005653-exon-sc0000054-1510915933:457453..457486Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1510915933:453755..453867TCONS_00005653-exon-sc0000054-1510915933:453755..453867Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1510915933:452631..452798TCONS_00005653-exon-sc0000054-1510915933:452631..452798Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1510915933:452273..452336TCONS_00005653-exon-sc0000054-1510915933:452273..452336Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1510915933:451187..451368TCONS_00005653-exon-sc0000054-1510915933:451187..451368Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1510915933:450158..450201TCONS_00005653-exon-sc0000054-1510915933:450158..450201Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1510915933:449730..449877TCONS_00005653-exon-sc0000054-1510915933:449730..449877Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1510915933:448867..449115TCONS_00005653-exon-sc0000054-1510915933:448867..449115Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1510915933:448279..448404TCONS_00005653-exon-sc0000054-1510915933:448279..448404Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1510915933:447787..447879TCONS_00005653-exon-sc0000054-1510915933:447787..447879Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1510915933:447071..447151TCONS_00005653-exon-sc0000054-1510915933:447071..447151Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1510915933:445516..445695TCONS_00005653-exon-sc0000054-1510915933:445516..445695Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1510915933:444818..444895TCONS_00005653-exon-sc0000054-1510915933:444818..444895Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1510915933:443912..444260TCONS_00005653-exon-sc0000054-1510915933:443912..444260Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1491911889:457453..457486TCONS_00005653-exon-sc0000054-1491911889:457453..457486Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1491911889:453755..453867TCONS_00005653-exon-sc0000054-1491911889:453755..453867Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1491911889:452631..452798TCONS_00005653-exon-sc0000054-1491911889:452631..452798Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1491911889:452273..452336TCONS_00005653-exon-sc0000054-1491911889:452273..452336Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1491911889:451187..451368TCONS_00005653-exon-sc0000054-1491911889:451187..451368Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1491911889:450158..450201TCONS_00005653-exon-sc0000054-1491911889:450158..450201Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1491911889:449730..449877TCONS_00005653-exon-sc0000054-1491911889:449730..449877Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1491911889:448867..449115TCONS_00005653-exon-sc0000054-1491911889:448867..449115Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1491911889:448279..448404TCONS_00005653-exon-sc0000054-1491911889:448279..448404Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1491911889:447787..447879TCONS_00005653-exon-sc0000054-1491911889:447787..447879Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1491911889:447071..447151TCONS_00005653-exon-sc0000054-1491911889:447071..447151Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1491911889:445516..445695TCONS_00005653-exon-sc0000054-1491911889:445516..445695Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1491911889:444818..444895TCONS_00005653-exon-sc0000054-1491911889:444818..444895Clytia hemisphaericaexon
TCONS_00005653-exon-sc0000054-1491911889:443912..444260TCONS_00005653-exon-sc0000054-1491911889:443912..444260Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:443912..457486 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.6144	10.3483	8.80864	3.51921	34.063	27.0573	21.0371	22.4456	7.19644	5.49112	12.154	12.033	17.2905	22.504	10.7853	10.8766	3.70947	7.99242	9.4511	12.04	7.823	5.80474	13.5882	11.3306	24.4452	23.9521	3.78585	5.23241	10.8572	5.90896
Blast
[Close]
BLAST of TCONS_00005653 vs. Swiss-Prot (Human)
Match: BRE1B (E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4)

HSP 1 Score: 211.46 bits (537), Expect = 5.857e-58
Identity = 164/516 (31.78%), Postives = 274/516 (53.10%), Query Frame = 1 
Query:  121 VNLGPISTEEELDLKVVKIQNAKLYSKLEEKNAQEEESKVRFAKLERLRNNDQNIISSMNVAWNQLDQDVNNLLK-----------------RFGDVSEDEALA------------------MSETTVAFLEKLSNRTTKGTSEEIQKRVTHSSSIIERLVVRIEKNMKRNKELIETLKNDXXXXXXXXXXXXXXGDQNDFEDERNDISSTELELRQELSLTKSENLKLHDSMTSLQDKYRTMSTEYSEMKDRLATMQKENAELKAKQEDMEYDLQRATKQFEKLIKKLNETHEQXXXXXXXXXXXXXXXXXXXXXXXXXXHVKLVKDTPEDIKAEMDAKDELAXXXXXXXXXXXXXXXXXHVEHDKLKQQLMQLPDEVIINHTKYKMLQTQFNLCYNDAQEIRRHCEEARKIVVNNRSQHIQQQEHYEMEIQTQRKKVRAEISQLERALAESRKDLELLRVEYEHNMKAHEQIGPMAKEMRHLINSLQNHNQQLKGEVSRYKKKLTDVEKKLGDI 1563
            + LG IS+ EE+DLKV++ +N KL  +LE++ A E+E + R  KLE+ +  D   +  +N  W QLD+ V  LL+                 + G   +   L                   +SE  +AF+  L   +++    E+Q R+  S + + R+V   ++  +R +EL + + +               GD      E     + EL           EN +L D  T LQ+K+  +S EYSE++D++ + + +  E++   ED+++D+++  K+ +KL K L E  EQ +     S + SG              + L     E + AE++   ELAN+R+ EL+KLQ   Q     +++LK  L  LP+EV+    +Y+MLQ QF+L YN++ +++   +EAR +++  ++ H++  EH E +    +KK+R E+ QLE  LA+ RK+ E+LR+E+E N+ A+EQ GP+ +EMRHLI+SLQNHN QLKG+  RYK+KL +V+ ++G +
Sbjct:   36 IRLGGISSTEEMDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLRCHESQGELSSAPEAPGTQEGPTCDGTPLPEPGTSELRDPLLMQLRPPLSEPALAFVVALGASSSEEVELELQGRMEFSKAAVSRVVEASDRLQRRVEELCQRVYS--------------RGDSEPL-SEAAQAHTREL---------GRENRRLQDLATQLQEKHHRISLEYSELQDKVTSAETKVLEMETTVEDLQWDIEKLRKREQKLNKHLAEALEQLNSGYYVSGSSSGFQGG---------QITLSMQKFEMLNAELEENQELANSRMAELEKLQAELQGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQFSLLYNESLQVKTQLDEARGLLLATKNSHLRHIEHMESDELGLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIGKL 518
The following BLAST results are available for this feature:
BLAST of TCONS_00005653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRE1B5.857e-5831.78E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens ... [more]
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