TCONS_00005656 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005656
Unique NameTCONS_00005656
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length695

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005656 ID=TCONS_00005656|Name=TCONS_00005656|organism=Clytia hemisphaerica|type=transcript|length=695bp
CACATAAAATTAAGCCTCTTTTAAATGAGTAGCTTTAAAATAAAGTAATT
AAGATTTAAAATTAAGTATTAGAAAGCTCATTAAGTATTTTATTGTCTAC
TCAACAAATTAAAAGCTTATATATAGAAGGGAGTGTCAGACACTAGTTTG
CAGATCAAGATCAACTGGCTCTGGTTAAGGAAGCAGAACTCTACGTACAA
AATGAGAGTAATTTTCGCACTTTGTTTGTTGGTTGTCTGTGCAGTTCAAA
TATCCGACCAACATAGAAGACGACCTGGCAAACCGATATTTAACCGCCGG
CGATGTCGTCCTATTTGTCGAAGATGGACCTATCAGTTACGTAGAAAATA
TCAACAATGTTTGAGCGAATCTGGTAACCTCCAAAGTGAAGTTGATTCTC
TTAAAAATGCTTTAAACTCGACAGGTTTTGTTCTCGAAATTGCTCCACAA
GATATTGAGCCACCAACGGCTGATGAATTGGAATTAGTGCGAACTGGTTT
GATTGATACATTAcaaaacataacttttaattcGACAGGCAATGCAACGT
TACCAGGGAAACGAAAACGAAGATCAGTCGACCAATGTCCACAAGATCGG
AGACAAATTCTGGCAACTATTGATATGTCAACTGGAATACCTCCTGGTAA
AGTGAACACAGAGTTTTTGGGTTACACTGATTCTCTTGGATTGAT
Run BLAST on NCBI

transcript from alignment at sc0000054:516247..518332-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005656 ID=TCONS_00005656|Name=TCONS_00005656|organism=Clytia hemisphaerica|type=transcript|length=2086bp|location=Sequence derived from alignment at sc0000054:516247..518332- (Clytia hemisphaerica)
CACATAAAATTAAGCCTCTTTTAAATGAGTAGCTTTAAAATAAAGTAATT
AAGATTTAAAATTAAGTATTAGAAAGCTCATTAAGTATTTTATTGTCTAC
TCAACAAATTAAAAGCTTATATATAGAAGGGAGTGTCAGACACTAGTTTG
CAGATCAAGATCAACTGGCTCTGGTTAAGGAAGCAGAACTCTACGTACAA
AATGGTAAGGTTATATTTGTACTGAATTCTCGACCTCGATCCGACAAGGC
TGACACATAAAATTGTTTCATTGTCGGTGTAACGTCGGTGTTCTTTGGAA
AAAGGAAAGTTAGAATTTTTTTTTGAATGAGTTTGAAAAGAGAGACCGGA
AAAAGGATATTTTCAACAAGGTTTTTTTTGGCTCAGTTTGAAAAGAACCT
GATATGTACTTGAGGTTTACAAATTTTCGCGAACATAAATTCTCCTTTCC
TTCGAAGCATAAGCTTTTCGTGATTTAAATTAATCTAAGATTTTGAATAA
AATTTGCCTTTAATTGTGACAAAATGTTAATTAAATTCGACAGAATGTCA
CCTTTGAATTGATTATTTTCAGCTCTTTATATTATATTTTTCCTGAGCAT
GAATTTACTTCCGCAAAAATGGCTAAAAATCGCGAAATCTTGAACTTTTT
GTAAAAACTTGTACGCCTAAAGAAGAATTTTCATTTTGAAATAACTTCTA
AATCCTATTTCATCTTTCTATAGAGAGTAATTTTCGCACTTTGTTTGTTG
GTTGTCTGTGCAGTTCAAATATCCGACCAACATAGAAGACGACCTGGCAA
ACCGATATTTAACCGCCGGCGATGTCGTCCTATTTGTCGAAGATGGACCT
ATCAGTTACGTAGAAAATATCAACAATGTTTGAGCGAATCTGGTAACCTC
CAAAGTGAAGTTGATTCTCTTAAAAATGCTTTAAACTCGACAGGTTTTGT
TCTCGAAATTGCTCCACAAGATATTGAGCCACCAACGGCTGATGAATTGG
AATTAGTGCGAACTGGTTTGATTGATACATTACAAAACATAACTTTTAAT
TCGACAGGCAATGCAACGTTACCAGGGAAACGAAAACGAAGATCAGTCGG
TAAGTTAAATTTAAGTTTCAAGATGTTTAAAAATTTTAATGATTTTTGAT
TTTGATTTGTGTTTAGGGTCCGTAATTTCATCAATCATAAAGGCTAGTTC
TTCCCATGACCTAGACCGTCGAACAGTATTCAAACTTATTCCGTCTCAGA
CAAATTATACCGTCTCAGTGACGGTAAATAAAGAGTTCATTTCCGTCTAA
AAATTGGGCCATTCCATTTTATATCTATACAGGGGGTGAACGAACATTTC
CAGGGGGTAATTCGAGAAAAATTTCCAGGGGTGTTTTTTCATTTTTCCAA
GGGGGTTAAAAGTTATTCTAAAATTTACAGGGGGTAAAAAAACAGATTTT
AGTTCGTCCACCCTCACTTTAAGGCATCAAAAGGATTTTTCCAAGGGTAT
TTTTGCAAATTTTCCCATTTTCCAGGGGGTATCCACACATTTTCAATAAT
TCTTTTTTAATTTGAAAAGGTTTGTCCACAATTTCAAGATTACGTGCTAA
ATAGCTATGTAAAATCCGTTTTCCATCGAAAAACCTTGGTTTGACCACTG
ATCAATTAGGGTGGAGGATAAGCGTTGTTTGAGTATCATGTGATATCACT
CAACCGTTCGGTCTTGCACTGGTACGTCTGCACCTAGAACGGTAGCCGCC
TTGTCTTAAACCCAGGTTGCCACCTTTTAAAGGCAAAAGGTGTTAAAAAA
CTCCACATACCCAGCTATTATAATGAGATGAAGCGCAATCTCCTCCAGGC
AAAACATGACTCAAAATTTTATTTTATTTTGAGAATTTACTTAAATTCAC
TTAAATCTTAAATAAAAAAGTGTTCAGTAACTCAATCATTTCAGAATCTA
ACAATATGCTTTGAACTTCAGACCAATGTCCACAAGATCGGAGACAAATT
CTGGCAACTATTGATATGTCAACTGGAATACCTCCTGGTAAAGTGAACAC
AGAGTTTTTGGGTTACACTGATTCTCTTGGATTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003197XLOC_003197Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005656-exon-sc0000054-1575043694:518129..518332TCONS_00005656-exon-sc0000054-1575043694:518129..518332Clytia hemisphaericaexon
TCONS_00005656-exon-sc0000054-1575043694:517234..517609TCONS_00005656-exon-sc0000054-1575043694:517234..517609Clytia hemisphaericaexon
TCONS_00005656-exon-sc0000054-1575043694:516247..516361TCONS_00005656-exon-sc0000054-1575043694:516247..516361Clytia hemisphaericaexon
TCONS_00005656-exon-sc0000054-1510915933:518129..518332TCONS_00005656-exon-sc0000054-1510915933:518129..518332Clytia hemisphaericaexon
TCONS_00005656-exon-sc0000054-1510915933:517234..517609TCONS_00005656-exon-sc0000054-1510915933:517234..517609Clytia hemisphaericaexon
TCONS_00005656-exon-sc0000054-1510915933:516247..516361TCONS_00005656-exon-sc0000054-1510915933:516247..516361Clytia hemisphaericaexon
TCONS_00005656-exon-sc0000054-1491911889:518129..518332TCONS_00005656-exon-sc0000054-1491911889:518129..518332Clytia hemisphaericaexon
TCONS_00005656-exon-sc0000054-1491911889:517234..517609TCONS_00005656-exon-sc0000054-1491911889:517234..517609Clytia hemisphaericaexon
TCONS_00005656-exon-sc0000054-1491911889:516247..516361TCONS_00005656-exon-sc0000054-1491911889:516247..516361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:516247..518332 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0826537	0	0	0	0	0	0.00961176	0	0	0	0	0	0.0038861	0.0889676	0.00688087	0.275578	0	3.08745	0.571257	0	0.261562	0.832292	0.313505	0	1.71729	0.671001	0.174707	0.247651
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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