TCONS_00005657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005657
Unique NameTCONS_00005657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005657 ID=TCONS_00005657|Name=TCONS_00005657|organism=Clytia hemisphaerica|type=transcript|length=862bp
ATACCAGGAGATGATTTCAAATTTGCTCTAAGGAAACAAAGATCTATTGG
AGGACCATGCACACAGAACCATGATGTAATCCTGGCAACCATTGGTGGCC
TTGATGCAATACTCATTGGAGCAATGAACACAGAATTTCTTAGTTACACT
GACTCTCTTGGAGATATCGATTCGAATCTTATTCACTCGTGTGCGGAATG
TCGTTATCAAATCACAATACCTGGATATATTCCAGAGGTACACCATCACG
TCATTTGTCCAAAAGAAACGAAACCATACTGTATGGGTGGCGTGGGAGAA
TGTGCGAAACTGGAAGTCGCAACACTAATTTACAACCCGACCAATACAGC
ACAACCAACTCGATACATTACGTTAAATAAAGGCTGCTCTTGTCAACAGT
ATAAAGTATGGAATATTTTGGGTGATGGTAATTAATGACGGAACTGTCGg
acaaaaatctaattttaaaacaattaaGAATGCATACACACTTACTCGCA
TTGACAGAAAAATTATTGATGtaaacttttacaaaatcttatctaaaaaa
acattccaaaatCACATCTTGCTTTTACTTGCtctttataagcatatttt
tttggaaaacaggCTCAGTTACACTAAAGCTATATTGTTTTAAATGAAGC
TCAAATCACGCCCTTTGCAGCCCTTTGAAATGCTtattttttcgagaaaa
aaaattggtttcttttgaaatggaaaagaaaaattaaaatctcaaATACA
CAACCTATGAGCAATGACCAATAACCAAAGCTCACTAATATGTTATTgat
tatcttcttttttttcataccAAATCCAGTATTCAATGTGCTAATCAAAG
TCTAATAAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000054:524190..526230-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005657 ID=TCONS_00005657|Name=TCONS_00005657|organism=Clytia hemisphaerica|type=transcript|length=2041bp|location=Sequence derived from alignment at sc0000054:524190..526230- (Clytia hemisphaerica)
ATACCAGGAGATGATTTCAAATTTGCTCTAAGGAAACAAAGATCTATTGG
TAAGTCCACTTAAAATAATTTAAAATATTTGAAAACAAACATTATTAAAA
GAGCCGTGAGCAGATCGGATTAAACGATTGAGTCTAAAAACCGACACATT
TCCTGATTCAATTTCTAGCATGGCTGGAAAAGCTCAGTTCGTAAAGCAGT
GTATTGGCGACGTGAAAGTCGTGAGTCGGAATCTAAATCACGTCCTCGGC
TTAATAGTTTTCTGGTAGTGGCATTCCATGGAAAGTTCTGATTTTTCTAT
AGCGAATTTTATACTTTAAAGGAGGACCATGCACACAGAACCATGATGTA
ATCCTGGCAACCATTGGTGGCCTTGATGCAATACTCATTGGAGCAATGAA
CACAGAATTTCTTAGTTACACTGACTCTCTTGGAGATATCGATTCGAATC
TTATTCACTCGTGTGCGGAATGTCGTTATCAAATCACAATACCTGGGTAA
GAATGATTTTGGAACCAGGTAAAGGTTTCGTTTTTAAATAAGAGTGATAT
CGTTTGCTTACTCATCAATTTTTAAAAGCTTTTTCACATTGGATTGACAC
GGATATGGAGCAAGATTGGTCAGAAAGAGGAAAAACAACATTTTTTGCTT
ATACCAGGATAAGCAAATACTTATAACAACAATAGGCAGGCACTGTACTG
ATATGAAATATGTGCCTGAAACGGGAACACTTATGTAAAAATAAAACCTT
ACTTTACCTGGTGTTGGTAAATATCTACAATATGATATTATTTTGCTTAG
TTTTGCAAAATTTCGGATACATTTGACAGAAAGAGGTTCTCAGATTCGAG
CTTAACTTAGCCTGTTCTAAACTTTTTTTTCGTAGAAAAAAGAACACGAA
GTACAGTTTATTACGGTTGGACAAGGTTCCGCGTCTGAGCTCTAGTTTAG
ACGGCCGACTTTCTGCCCGGCCTATTCTAATTGTTAGAGTAGGCAGAAAG
AGGGCACAATATTGGTTGTTAAAATCTTTGCTCAGAAATGTTTGAAAGAA
CAAATTGCATTGACGTCAAAAGAGGGCCATGCATTGACTTTATAGACAGC
CCACTTTATATCCACTTTAATTCGCAATTAGAATAGGCAGGGCGAAAAGT
GGGCCGTCTAAACTAGAACTGAGACATTTTCTCGCAAGTCTCTTTGTTAC
CTCTATGGTAGAGTTTTATTTTAAGCATGCAAATTCCTTCTACTAAAGCG
ACGTTACTCTATCACCTCAATACAATAGTGTCTTTCGTTTTTCAATAGAG
TACTCCTACACCATCTGTTTTCGATCAGAAAACATTGAGCCCGTGGTAGG
AGTGGGGCAGGCTAAACTCAACGTCTCAACTCAGCAACCATTTATTGTTT
CAGATATATTCCAGAGGTACACCATCACGTCATTTGTCCAAAAGAAACGA
AACCATACTGTATGGGTGGCGTGGGAGAATGTGCGAAACTGGAAGTCGCA
ACACTAATTTACAACCCGACCAATACAGCACAACCAACTCGATACATTAC
GTTAAATAAAGGCTGCTCTTGTCAACAGTATAAAGTATGGAATATTTTGG
GTGATGGTAATTAATGACGGAACTGTCGGACAAAAATCTAATTTTAAAAC
AATTAAGAATGCATACACACTTACTCGCATTGACAGAAAAATTATTGATG
TAAACTTTTACAAAATCTTATCTAAAAAAACATTCCAAAATCACATCTTG
CTTTTACTTGCTCTTTATAAGCATATTTTTTTGGAAAACAGGCTCAGTTA
CACTAAAGCTATATTGTTTTAAATGAAGCTCAAATCACGCCCTTTGCAGC
CCTTTGAAATGCTTATTTTTTCGAGAAAAAAAATTGGTTTCTTTTGAAAT
GGAAAAGAAAAATTAAAATCTCAAATACACAACCTATGAGCAATGACCAA
TAACCAAAGCTCACTAATATGTTATTGATTATCTTCTTTTTTTTCATACC
AAATCCAGTATTCAATGTGCTAATCAAAGTCTAATAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003198XLOC_003198Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005657-exon-sc0000054-1575043694:526182..526230TCONS_00005657-exon-sc0000054-1575043694:526182..526230Clytia hemisphaericaexon
TCONS_00005657-exon-sc0000054-1575043694:525735..525909TCONS_00005657-exon-sc0000054-1575043694:525735..525909Clytia hemisphaericaexon
TCONS_00005657-exon-sc0000054-1575043694:524190..524827TCONS_00005657-exon-sc0000054-1575043694:524190..524827Clytia hemisphaericaexon
TCONS_00005657-exon-sc0000054-1510915933:526182..526230TCONS_00005657-exon-sc0000054-1510915933:526182..526230Clytia hemisphaericaexon
TCONS_00005657-exon-sc0000054-1510915933:525735..525909TCONS_00005657-exon-sc0000054-1510915933:525735..525909Clytia hemisphaericaexon
TCONS_00005657-exon-sc0000054-1510915933:524190..524827TCONS_00005657-exon-sc0000054-1510915933:524190..524827Clytia hemisphaericaexon
TCONS_00005657-exon-sc0000054-1491911889:526182..526230TCONS_00005657-exon-sc0000054-1491911889:526182..526230Clytia hemisphaericaexon
TCONS_00005657-exon-sc0000054-1491911889:525735..525909TCONS_00005657-exon-sc0000054-1491911889:525735..525909Clytia hemisphaericaexon
TCONS_00005657-exon-sc0000054-1491911889:524190..524827TCONS_00005657-exon-sc0000054-1491911889:524190..524827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:524190..526230 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0487812	0	0	0	0	0	0.0698503	0.130786	0.524168	0.473345	0.880703	0.647612	0	0	0	0	0	0	0	0.279928	0.39129	0.495706	0	0.109771	0	0	0	0.0632649	0.0603025	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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