TCONS_00005663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005663
Unique NameTCONS_00005663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length972

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005663 ID=TCONS_00005663|Name=TCONS_00005663|organism=Clytia hemisphaerica|type=transcript|length=972bp
TTACCAGCAAGTCCTCCCTGAGTAGGATAGTGGGTTGGACCGTTTGTTGT
CGGTGCAAAAGTCTCTGGGGCTGCTGTGGGAGCTTCTGTTTCTGGGGCTG
CTGTTGGAGCATCAGTTTCTGGAGCTGCTGTAGGAGCTTCGGTTTCTGGA
GCTGCTGTTGGAGCTTCGGTTTCTGGAGCTGCTGTAGGAGCTTCAGTTCC
TGGAGCTGCTGTGGGAGCTTCGGTCTCTGGGGCTGCTGTAGGAGCTTCGG
TTTCTGGGACTGCTGTAGGGGCATCAGTTTCTGGGGCTGCTGTAGGAGCT
TTGGTTTCTGGAGCTGCTGTGGGAGCTTCGGTCTCTGGGGCAGCTGTTGG
AGCTTCGGTTTCTGGAGCTGCTGTAGGGGCATCAGTTTCTGGTGCTGCTG
TAGGAGCTTCGGTTTCTGGAGCTGCTGTGGGAGCTTCGGTCTCTGGGGCT
GCTGTAGGAGCTTCGGTTTCTGGAGCTGCTGTAGGAGCATCAGTTTCTGG
GGCTGCTGTGGGAGCTTCAGTTTCTGGGGCTGCTGTAGGGGCATTAGTTT
CTGGGGCTGCTGTGGGAGCTTCGGTTTCTGGAGCTGCTGTGGGTGCGTCG
GTCTCTGGGGCTGCTGTAGGGGCATCAGTTTCTGGAGCCGCTGTGGGTGC
TTCGGTCTCTGGGGCTGCTGTGGGAGCTTCAGTTACTGGGGCTACTGTAG
GGGCATCAGTTTCTGGGGCTGCTGTAGGAGGCTCAGTGGCTGGTTCAGTT
GGTGGTTCAGTGGGTGGCTCGGTTGGTGGTTCAGTTGGTGGCTCGGTTGG
TGGTTCAGTGGGTGGTTCAGTTGGTGGTTCGGTTGGTGGTTCAGTGGGTG
GTTCAGTTGGTGGCTCAGTGGGTGGCTCGGTTGGGGGCTCGGTTGGTGGC
TCGGTTGGTGGTTCAGTGGGTGGTTCGGTTGGTGGTTCAGTGGGTGGCTC
GGTTAATGGGGCATCAGTTCCT
Run BLAST on NCBI

transcript from alignment at sc0000054:610156..611829-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005663 ID=TCONS_00005663|Name=TCONS_00005663|organism=Clytia hemisphaerica|type=transcript|length=1674bp|location=Sequence derived from alignment at sc0000054:610156..611829- (Clytia hemisphaerica)
TTACCAGCAAGTCCTCCCTGAGTAGGATAGTGGGTTGGACCGTTTGTTGT
CGGTGCAAAAGTCTCTGGGGCTGCTGTGGGAGCTTCTGTTTCTGGGGCTG
CTGTTGGAGCATCAGTTTCTGGAGCTGCTGTAGGAGCTTCGGTTTCTGGA
GCTGCTGTTGGAGCTTCGGTTTCTGGAGCTGCTGTAGGAGCTTCAGTTCC
TGGAGCTGCTGTGGGAGCTTCGGTCTCTGGGGCTGCTGTAGGAGCTTCGG
TTTCTGGGACTGCTGTAGGGGCATCAGTTTCTGGGGCTGCTGTAGGAGCT
TTGGTTTCTGGAGCTGCTGTGGGAGCTTCGGTCTCTGGGGCAGCTGTTGG
AGCTTCGGTTTCTGGAGCTGCTGTAGGGGCATCAGTTTCTGGTGCTGCTG
TAGGAGCTTCGGTTTCTGGAGCTGCTGTGGGAGCTTCGGTCTCTGGGGCT
GCTGTAGGAGCTTCGGTTTCTGGAGCTGCTGTAGGAGCATCAGTTTCTGG
GGCTGCTGTGGGAGCTTCAGTTTCTGGGGCTGCTGTAGGGGCATTAGTTT
CTGGGGCTGCTGTGGGAGCTTCGGTTTCTGGAGCTGCTGTGGGTGCGTCG
GTCTCTGGGGCTGCTGTAGGGGCATCAGTTTCTGGAGCCGCTGTGGGTGC
TTCGGTCTCTGGGGCTGCTTTAGGAGTTTTGGTTTCTGGAGCTGCTGTAG
GGGCATCAGTTTCTGGGGCTGCTGTGGGAGCTTCAGTTACTGGGGCTACT
GTAGGGGCATCAGTTTCTGGAGCCGCTGTGGGTGCTTCGGTCTCTGAGGC
TGCTGTGGGAGCTTCAGTTACTGGGGCTACTGTAGGGGCATCAGTTTCTG
GAGCCGCTGTGGGTGCTTCGGTCTCTGAGGCTGCTGTGGGAGCTTCAGTT
ACTGGGGCTACTGTAGGGGCATCAGTTTCTGGAGCCGCTGTGGGTGCTTC
GGTCTCTGAGGCTGCTGTGGGAGCTTCAGTTACTGGGGCTACTGTAGGGG
CATCAGTTTCTGGAGCCGCTGTGGGTGCTTCGGTCTCTGAGGCTGCTGTG
GGAGCTTCAGTTACTGGGGCTACTGTAGGGGCATCAGTTTCTGGAGCCGC
TGTGGGTGCTTCGGTCTCTGAGGCTGCTGTGGGAGCTTCAGTTACTGGGG
CTACTGTAGGGGCATCAGTTTCTGGAGCCGCTGTGGGTGCTTCGGTCTCT
GAGGCTGCTGTGGGAGCTTCAGTTACTGGGGCTACTGTAGGGGCATCAGT
TTCTGGAGCCGCTGTGGGTGCTTCGGTCTCTGAGGCTGCTGTGGGAGCTT
CAGTTACTGGGGCTACTGTAGGGGCATCAGTTTCTGGAGCCGCTGTGGGT
GCTTCGGTCTCTGAGGCTGCTGTGGGAGCTTCAGTTACTGGGGCTACTGT
AGGGGCATCAGTTTCTGGGGCTGCTGTAGGAGGCTCAGTGGCTGGTTCAG
TTGGTGGTTCAGTGGGTGGCTCGGTTGGTGGTTCAGTTGGTGGCTCGGTT
GGTGGTTCAGTGGGTGGTTCAGTTGGTGGTTCGGTTGGTGGTTCAGTGGG
TGGTTCAGTTGGTGGCTCAGTGGGTGGCTCGGTTGGGGGCTCGGTTGGTG
GCTCGGTTGGTGGTTCAGTGGGTGGTTCGGTTGGTGGTTCAGTGGGTGGC
TCGGTTAATGGGGCATCAGTTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003201XLOC_003201Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005663-exon-sc0000054-1575043694:611167..611829TCONS_00005663-exon-sc0000054-1575043694:611167..611829Clytia hemisphaericaexon
TCONS_00005663-exon-sc0000054-1575043694:610156..610464TCONS_00005663-exon-sc0000054-1575043694:610156..610464Clytia hemisphaericaexon
TCONS_00005663-exon-sc0000054-1510915933:611167..611829TCONS_00005663-exon-sc0000054-1510915933:611167..611829Clytia hemisphaericaexon
TCONS_00005663-exon-sc0000054-1510915933:610156..610464TCONS_00005663-exon-sc0000054-1510915933:610156..610464Clytia hemisphaericaexon
TCONS_00005663-exon-sc0000054-1491911889:611167..611829TCONS_00005663-exon-sc0000054-1491911889:611167..611829Clytia hemisphaericaexon
TCONS_00005663-exon-sc0000054-1491911889:610156..610464TCONS_00005663-exon-sc0000054-1491911889:610156..610464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:610156..611829 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.0966836	0	0.0619344	22.2287	21.9548	0	0	6.95219	9.01348	100.303	128.169	40.2229	83.7254	15.0201	21.3497	12.645	13.893	0.159141	0.169301	0.350831	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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