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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005666 ID=TCONS_00005666|Name=TCONS_00005666|organism=Clytia hemisphaerica|type=transcript|length=1996bp
TTAAAAATAATGAACGAAAAATATGGGATTCCAAGAATTCTCACGATTTA
CGAATGATTTTGATTACAACGATGACCGAGATGATAGACATCAGAATCAT
TCACAAGAGAAACAAACCTACCTACAGAATATGGTGATGAACGTTGGTGA
ATGTGGCTTCAGATGCATCAGAACTACATTCTTCGTTTACAATCTCTTAT
TCTGGATGGTCGGCTTTCTAGTCTTGTTCTTAGCCGCTGTTCTACATACC
ACACGAAACGAGGCTAGtaatgattttacaaaaatctctGGACTTCAAGG
CTATTTAAATGGACCCATCATTTTGTTAGTTGTCGGTTCCGTGACTTTGT
TACTTTCTTTTATGGCTTGTTTTGGATCGAGGCGTAATAATTTGGTGCTT
CTTATATTATACCTGGTTGTTTTGATCGTTATTACGGCAACCGAGTTAGG
ACTTATAATCCTGGTTTATTCTTTTCGAGTTCCTATTGAGAAAAGTCTGA
AaatggattttcaaaaaacattgaatCAATATGGCATACCTAGTAATGAA
AGGATCACAACAGCGATCGATGCACTACAACGTGAATTCCATTGTTGTGG
TAACGATGGATACGGGGATTGGGTTGAGACAACATGGTGGAATCAATATG
ACGGTAATTACAGTGTACCGACATCTTGCTGTGTCATTCCACGCatgaaa
aattgtaacaaaaatgTTGATAAGAAATTAGAGACCATTTTTACTGAAGG
TTGTTATGAAGATGTCAAGAAATACCTTTTTGAGAATATACACATCATTG
GTGGTTTTGCTGTTTGGATTGTGGTCTTGGAAGTGGTGGGTATTTTGTTG
GCTGTTGCGCTGGTCATCAAGATACGACAAAACAACAGGATGCAACAAAC
TACTTTAAATGGTGATTCGTCATATCATAACTTGACTGGTGATATCGGCT
ATTGATTGTCATTGCTCTGTAGTAACTTTGAAATATTGGTGACGATCTGT
AGTCACTTCTCTTTCATTTCAATACCTATCTTTCGAAGTCCCTCTAAAGG
TCGTAAAAATCATAATATCTTATGTCAGCCCCTCTAAAGGTtacaaaaaa
caaccaaaaactttaaattttgagaaagaagTCCCGGTAAGGGCcccaaa
attaacaaaatttcaGGTTTTTTCCTCGACTTTTAGAACCTAAAAattcc
gattttcaaaaatgggTTGATACCCCCGTCATTTTGCAAACCATTTTGCA
ACACCCTCAGGGTGTTAACAACACTAATCAatattcttttttgaaataat
attaAAACGGTTCGTTAGTAAGCATAATTACAAAAAATCttaaccaaaaa
tatttatatcTATTGTATTATCTTTACTGGATAGACTATAAAATCAttca
atcattaaatttttaataaacaGCAACCTAGTTAGTTCTTCCTGTCTTTA
ATAACGGCATCTTTTTTTACAAGACTtcaaaaatcgtgatttttttggtc
aattttaatGGAGTTATTGTTTTGTATGCATAGACGAGCTATCGTTTAGC
TCCTACCAAGAAAGTTTGTTCAATAATGTAAACGTTCGATTTTTCAACTT
CTTTCAAATATCCAAGGACATTCATTTGACGACCGCCCGCAACATGGATA
TAATCACAGATGAATGTCGAAAACATGTTTATAGGCCAGTTGTTTCAATG
GGTAGATTTAGTGATGGGTTGTGTTGCCAGCAAGGACAAATTGAACCACA
TTGAGTAGTGCTACAATttgggtaccaatttcaaaatacTCTGAAAAAAG
ATGGGGGATAGCTTGGTCCAAGACATGTAAAGTTCAATGGGTGGATGTGA
TGAGTTGTGTTGCCAGTACGTTGCTGATGAATGCCAGAATAAGGTTTCTA
TATACGACACCAGAGAAGGGTTTTATTTGACACCATCATTGAGCATAGAA
AATCAACAATATGCCAGAGAACAGGGATGCCGATATCGTTATTTTG Run BLAST on NCBI transcript from alignment at sc0000054:657245..659313- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005666 ID=TCONS_00005666|Name=TCONS_00005666|organism=Clytia hemisphaerica|type=transcript|length=2069bp|location=Sequence derived from alignment at sc0000054:657245..659313- (Clytia hemisphaerica)
TTAAAAATAATGAACGAAAAATATGGGATTCCAAGAATTCTCACGATTTA
CGAATGATTTTGATTACAACGATGACCGAGATGATAGACATCAGAATCAT
TCACAAGAGAAACAAACCTACCTACAGAATATGGTGATGAACGTTGGTGA
ATGTGGCTTCAGATGCATCAGAACTACATTCTTCGTTTACAATCTCTTAT
TCTGGATGGTCGGCTTTCTAGTCTTGTTCTTAGCCGCTGTTCTACATACC
ACACGAAACGAGGCTAGTAATGATTTTACAAAAATCTCTGGACTTCAAGG
CTATTTAAATGGACCCATCATTTTGTTAGTTGTCGGTTCCGTGACTTTGT
TACTTTCTTTTATGGCTTGTTTTGGATCGAGGCGTAATAATTTGGTGCTT
CTTATATTATACCTGGTTGTTTTGATCGTTATTACGGCAACCGAGTTAGG
ACTTATAATCCTGGTTTATTCTTTTCGAGTTCCTATTGAGAAAAGTCTGA
AAATGGATTTTCAAAAAACATTGAATCAATATGGCATACCTAGTAATGAA
AGGATCACAACAGCGATCGATGCACTACAACGTGAATTCCATTGTTGTGG
TAACGATGGATACGGGGATTGGGTTGAGACAACATGGTGGAATCAATATG
ACGGTAATTACAGTGTACCGACATCTTGCTGTGTCATTCCACGCATGAAA
AATTGTAACAAAAATGTTGATAAGAAATTAGAGACCATTTTTACTGAAGG
TTGTTATGAAGATGTCAAGAAATACCTTTTTGAGAATATACACATCATTG
GTGGTTTTGCTGTTTGGATTGTGGTCTTGGAAGTGGTGGGTATTTTGTTG
GCTGTTGCGCTGGTCATCAAGATACGACAAAACAACAGGATGCAACAAAC
TACTTTAAATGGTGATTCGTCATATCATAACTTGACTGGTGATATCGGCT
ATTGATTGTCATTGCTCTGTAGTAACTTTGAAATATTGGTGACGATCTGT
AGTCACTTCTCTTTCATTTCAATACCTATCTTTCGAAGTCCCTCTAAAGG
TCGTAAAAATCATANTGATCAGTAGTCGCCTTTCTTTCATTTCAATACCT
ATCTTTCGAAGTCCTTCTAAAGGTCATAAAAATCACAATATCTTATGTCA
GCCCCTCTAAAGGTTACAAAAAACAACCAAAAACTTTAAATTTTGAGAAA
GAAGTCCCGGTAAGGGCCCCAAAATTAACAAAATTTCAGGTTTTTTCCTC
GACTTTTAGAACCTAAAAATTCCGATTTTCAAAAATGGGTTGATACCCCC
GTCATTTTGCAAACCATTTTGCAACACCCTCAGGGTGTTAACAACACTAA
TCAATATTCTTTTTTGAAATAATATTAAAACGGTTCGTTAGTAAGCATAA
TTACAAAAAATCTTAACCAAAAATATTTATATCTATTGTATTATCTTTAC
TGGATAGACTATAAAATCATTCAATCATTAAATTTTTAATAAACAGCAAC
CTAGTTAGTTCTTCCTGTCTTTAATAACGGCATCTTTTTTTACAAGACTT
CAAAAATCGTGATTTTTTTGGTCAATTTTAATGGAGTTATTGTTTTGTAT
GCATAGACGAGCTATCGTTTAGCTCCTACCAAGAAAGTTTGTTCAATAAT
GTAAACGTTCGATTTTTCAACTTCTTTCAAATATCCAAGGACATTCATTT
GACGACCGCCCGCAACATGGATATAATCACAGATGAATGTCGAAAACATG
TTTATAGGCCAGTTGTTTCAATGGGTAGATTTAGTGATGGGTTGTGTTGC
CAGCAAGGACAAATTGAACCACATTGAGTAGTGCTACAATTTGGGTACCA
ATTTCAAAATACTCTGAAAAAAGATGGGGGATAGCTTGGTCCAAGACATG
TAAAGTTCAATGGGTGGATGTGATGAGTTGTGTTGCCAGTACGTTGCTGA
TGAATGCCAGAATAAGGTTTCTATATACGACACCAGAGAAGGGTTTTATT
TGACACCATCATTGAGCATAGAAAATCAACAATATGCCAGAGAACAGGGA
TGCCGATATCGTTATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005666-exon-sc0000054-1575043694:658251..659313 | TCONS_00005666-exon-sc0000054-1575043694:658251..659313 | Clytia hemisphaerica | exon |
| TCONS_00005666-exon-sc0000054-1575043694:657245..658177 | TCONS_00005666-exon-sc0000054-1575043694:657245..658177 | Clytia hemisphaerica | exon |
| TCONS_00005666-exon-sc0000054-1510915933:658251..659313 | TCONS_00005666-exon-sc0000054-1510915933:658251..659313 | Clytia hemisphaerica | exon |
| TCONS_00005666-exon-sc0000054-1510915933:657245..658177 | TCONS_00005666-exon-sc0000054-1510915933:657245..658177 | Clytia hemisphaerica | exon |
| TCONS_00005666-exon-sc0000054-1491911889:658251..659313 | TCONS_00005666-exon-sc0000054-1491911889:658251..659313 | Clytia hemisphaerica | exon |
| TCONS_00005666-exon-sc0000054-1491911889:657245..658177 | TCONS_00005666-exon-sc0000054-1491911889:657245..658177 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:657245..659313 - |
Blast
The following BLAST results are available for this feature:
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