TCONS_00005667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005667
Unique NameTCONS_00005667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2141

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005667 ID=TCONS_00005667|Name=TCONS_00005667|organism=Clytia hemisphaerica|type=transcript|length=2141bp
TTATGTATGTATTAAACGTTGCAACTGgattatattttgttttagtaGCG
ATCTCAGGGGTGTCGGAAAATTGAGCATTTTGTTGACCTTGAGAATAATT
GTACAGTAGTTGAAAATTAATTGTTTATCTACGTATTTTCAAGTATTAAA
AATAATGAACGAAAAATATGGGATTCCAAGAATTCTCACGATTTACGAAT
GATTTTGATTACAACGATGACCGAGATGATAGACATCAGAATCATTCACA
AGAGAAACAAACCTACCTACAGAATATGGTGATGAACGTTGGTGAATGTG
GCTTCAGATGCATCAGAACTACATTCTTCGTTTACAATCTCTTATTCTGG
ATGGTCGGCTTTCTAGTCTTGTTCTTAGCCGCTGTTCTACATACCACACG
AAACGAGGCTAGtaatgattttacaaaaatctctGGACTTCAAGGCTATT
TAAATGGACCCATCATTTTGTTAGTTGTCGGTTCCGTGACTTTGTTACTT
TCTTTTATGGCTTGTTTTGGATCGAGGCGTAATAATTTGGTGCTTCTTAT
ATTATACCTGGTTGTTTTGATCGTTATTACGGCAACCGAGTTAGGACTTA
TAATCCTGGTTTATTCTTTTCGAGTTCCTATTGAGAAAAGTCTGAAaatg
gattttcaaaaaacattgaatCAATATGGCATACCTAGTAATGAAAGGAT
CACAACAGCGATCGATGCACTACAACGTGAATTCCATTGTTGTGGTAACG
ATGGATACGGGGATTGGGTTGAGACAACATGGTGGAATCAATATGACGGT
AATTACAGTGTACCGACATCTTGCTGTGTCATTCCACGCatgaaaaattg
taacaaaaatgTTGATAAGAAATTAGAGACCATTTTTACTGAAGGTTGTT
ATGAAGATGTCAAGAAATACCTTTTTGAGAATATACACATCATTGGTGGT
TTTGCTGTTTGGATTGTGGTCTTGGAAGTGGTGGGTATTTTGTTGGCTGT
TGCGCTGGTCATCAAGATACGACAAAACAACAGGATGCAACAAACTACTT
TAAATGGTGATTCGTCATATCATAACTTGACTGGTGATATCGGCTATTGA
TTGTCATTGCTCTGTAGTAACTTTGAAATATTGGTGACGATCTGTAGTCA
CTTCTCTTTCATTTCAATACCTATCTTTCGAAGTCCCTCTAAAGGTCATA
AAAATCACAATATCTTATGTCAGCCCCTCTAAAGGTtacaaaaaacaacc
aaaaactttaaattttgagaaagaagTCCCGGTAAGGGCcccaaaattaa
caaaatttcaGGTTTTTTCCTCGACTTTTAGAACCTAAAAattccgattt
tcaaaaatgggTTGATACCCCCGTCATTTTGCAAACCATTTTGCAACACC
CTCAGGGTGTTAACAACACTAATCAatattcttttttgaaataatattaA
AACGGTTCGTTAGTAAGCATAATTACAAAAAATCttaaccaaaaatattt
atatcTATTGTATTATCTTTACTGGATAGACTATAAAATCAttcaatcat
taaatttttaataaacaGCAACCTAGTTAGTTCTTCCTGTCTTTAATAAC
GGCATCTTTTTTTACAAGACTtcaaaaatcgtgatttttttggtcaattt
taatGGAGTTATTGTTTTGTATGCATAGACGAGCTATCGTTTAGCTCCTA
CCAAGAAAGTTTGTTCAATAATGTAAACGTTCGATTTTTCAACTTCTTTC
AAATATCCAAGGACATTCATTTGACGACCGCCCGCAACATGGATATAATC
ACAGATGAATGTCGAAAACATGTTTATAGGCCAGTTGTTTCAATGGGTAG
ATTTAGTGATGGGTTGTGTTGCCAGCAAGGACAAATTGAACCACATTGAG
TAGTGCTACAATttgggtaccaatttcaaaatacTCTGAAAAAAGATGGG
GGATAGCTTGGTCCAAGACATGTAAAGTTCAATGGGTGGATGTGATGAGT
TGTGTTGCCAGTACGTTGCTGATGAATGCCAGAATAAGGTTTCTATATAC
GACACCAGAGAAGGGTTTTATTTGACACCATCATTGAGCATAGAAAATCA
ACAATATGCCAGAGAACAGGGATGCCGATATCGTTATTTTG
Run BLAST on NCBI

protein sequence of TCONS_00005667-protein

>TCONS_00005667-protein ID=TCONS_00005667-protein|Name=TCONS_00005667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MGFQEFSRFTNDFDYNDDRDDRHQNHSQEKQTYLQNMVMNVGECGFRCIR
TTFFVYNLLFWMVGFLVLFLAAVLHTTRNEASNDFTKISGLQGYLNGPII
LLVVGSVTLLLSFMACFGSRRNNLVLLILYLVVLIVITATELGLIILVYS
FRVPIEKSLKMDFQKTLNQYGIPSNERITTAIDALQREFHCCGNDGYGDW
VETTWWNQYDGNYSVPTSCCVIPRMKNCNKNVDKKLETIFTEGCYEDVKK
YLFENIHIIGGFAVWIVVLEVVGILLAVALVIKIRQNNRMQQTTLNGDSS
YHNLTGDIGY
Run BLAST on NCBI

transcript from alignment at sc0000054:657245..659458-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005667 ID=TCONS_00005667|Name=TCONS_00005667|organism=Clytia hemisphaerica|type=transcript|length=2214bp|location=Sequence derived from alignment at sc0000054:657245..659458- (Clytia hemisphaerica)
TTATGTATGTATTAAACGTTGCAACTGGATTATATTTTGTTTTAGTAGCG
ATCTCAGGGGTGTCGGAAAATTGAGCATTTTGTTGACCTTGAGAATAATT
GTACAGTAGTTGAAAATTAATTGTTTATCTACGTATTTTCAAGTATTAAA
AATAATGAACGAAAAATATGGGATTCCAAGAATTCTCACGATTTACGAAT
GATTTTGATTACAACGATGACCGAGATGATAGACATCAGAATCATTCACA
AGAGAAACAAACCTACCTACAGAATATGGTGATGAACGTTGGTGAATGTG
GCTTCAGATGCATCAGAACTACATTCTTCGTTTACAATCTCTTATTCTGG
ATGGTCGGCTTTCTAGTCTTGTTCTTAGCCGCTGTTCTACATACCACACG
AAACGAGGCTAGTAATGATTTTACAAAAATCTCTGGACTTCAAGGCTATT
TAAATGGACCCATCATTTTGTTAGTTGTCGGTTCCGTGACTTTGTTACTT
TCTTTTATGGCTTGTTTTGGATCGAGGCGTAATAATTTGGTGCTTCTTAT
ATTATACCTGGTTGTTTTGATCGTTATTACGGCAACCGAGTTAGGACTTA
TAATCCTGGTTTATTCTTTTCGAGTTCCTATTGAGAAAAGTCTGAAAATG
GATTTTCAAAAAACATTGAATCAATATGGCATACCTAGTAATGAAAGGAT
CACAACAGCGATCGATGCACTACAACGTGAATTCCATTGTTGTGGTAACG
ATGGATACGGGGATTGGGTTGAGACAACATGGTGGAATCAATATGACGGT
AATTACAGTGTACCGACATCTTGCTGTGTCATTCCACGCATGAAAAATTG
TAACAAAAATGTTGATAAGAAATTAGAGACCATTTTTACTGAAGGTTGTT
ATGAAGATGTCAAGAAATACCTTTTTGAGAATATACACATCATTGGTGGT
TTTGCTGTTTGGATTGTGGTCTTGGAAGTGGTGGGTATTTTGTTGGCTGT
TGCGCTGGTCATCAAGATACGACAAAACAACAGGATGCAACAAACTACTT
TAAATGGTGATTCGTCATATCATAACTTGACTGGTGATATCGGCTATTGA
TTGTCATTGCTCTGTAGTAACTTTGAAATATTGGTGACGATCTGTAGTCA
CTTCTCTTTCATTTCAATACCTATCTTTCGAAGTCCCTCTAAAGGTCGTA
AAAATCATANTGATCAGTAGTCGCCTTTCTTTCATTTCAATACCTATCTT
TCGAAGTCCTTCTAAAGGTCATAAAAATCACAATATCTTATGTCAGCCCC
TCTAAAGGTTACAAAAAACAACCAAAAACTTTAAATTTTGAGAAAGAAGT
CCCGGTAAGGGCCCCAAAATTAACAAAATTTCAGGTTTTTTCCTCGACTT
TTAGAACCTAAAAATTCCGATTTTCAAAAATGGGTTGATACCCCCGTCAT
TTTGCAAACCATTTTGCAACACCCTCAGGGTGTTAACAACACTAATCAAT
ATTCTTTTTTGAAATAATATTAAAACGGTTCGTTAGTAAGCATAATTACA
AAAAATCTTAACCAAAAATATTTATATCTATTGTATTATCTTTACTGGAT
AGACTATAAAATCATTCAATCATTAAATTTTTAATAAACAGCAACCTAGT
TAGTTCTTCCTGTCTTTAATAACGGCATCTTTTTTTACAAGACTTCAAAA
ATCGTGATTTTTTTGGTCAATTTTAATGGAGTTATTGTTTTGTATGCATA
GACGAGCTATCGTTTAGCTCCTACCAAGAAAGTTTGTTCAATAATGTAAA
CGTTCGATTTTTCAACTTCTTTCAAATATCCAAGGACATTCATTTGACGA
CCGCCCGCAACATGGATATAATCACAGATGAATGTCGAAAACATGTTTAT
AGGCCAGTTGTTTCAATGGGTAGATTTAGTGATGGGTTGTGTTGCCAGCA
AGGACAAATTGAACCACATTGAGTAGTGCTACAATTTGGGTACCAATTTC
AAAATACTCTGAAAAAAGATGGGGGATAGCTTGGTCCAAGACATGTAAAG
TTCAATGGGTGGATGTGATGAGTTGTGTTGCCAGTACGTTGCTGATGAAT
GCCAGAATAAGGTTTCTATATACGACACCAGAGAAGGGTTTTATTTGACA
CCATCATTGAGCATAGAAAATCAACAATATGCCAGAGAACAGGGATGCCG
ATATCGTTATTTTG

Coding sequence (CDS) from alignment at sc0000054:657245..659458-

>TCONS_00005667 ID=TCONS_00005667|Name=TCONS_00005667|organism=Clytia hemisphaerica|type=CDS|length=933bp|location=Sequence derived from alignment at sc0000054:657245..659458- (Clytia hemisphaerica)
ATGGGATTCCAAGAATTCTCACGATTTACGAATGATTTTGATTACAACGA
TGACCGAGATGATAGACATCAGAATCATTCACAAGAGAAACAAACCTACC
TACAGAATATGGTGATGAACGTTGGTGAATGTGGCTTCAGATGCATCAGA
ACTACATTCTTCGTTTACAATCTCTTATTCTGGATGGTCGGCTTTCTAGT
CTTGTTCTTAGCCGCTGTTCTACATACCACACGAAACGAGGCTAGTAATG
ATTTTACAAAAATCTCTGGACTTCAAGGCTATTTAAATGGACCCATCATT
TTGTTAGTTGTCGGTTCCGTGACTTTGTTACTTTCTTTTATGGCTTGTTT
TGGATCGAGGCGTAATAATTTGGTGCTTCTTATATTATACCTGGTTGTTT
TGATCGTTATTACGGCAACCGAGTTAGGACTTATAATCCTGGTTTATTCT
TTTCGAGTTCCTATTGAGAAAAGTCTGAAAATGGATTTTCAAAAAACATT
GAATCAATATGGCATACCTAGTAATGAAAGGATCACAACAGCGATCGATG
CACTACAACGTGAATTCCATTGTTGTGGTAACGATGGATACGGGGATTGG
GTTGAGACAACATGGTGGAATCAATATGACGGTAATTACAGTGTACCGAC
ATCTTGCTGTGTCATTCCACGCATGAAAAATTGTAACAAAAATGTTGATA
AGAAATTAGAGACCATTTTTACTGAAGGTTGTTATGAAGATGTCAAGAAA
TACCTTTTTGAGAATATACACATCATTGGTGGTTTTGCTGTTTGGATTGT
GGTCTTGGAAGTGGTGGGTATTTTGTTGGCTGTTGCGCTGGTCATCAAGA
TACGACAAAACAACAGGATGCAACAAACTACTTTAAATGGTGATTCGTCA
TATCATAACTTGACTGGTGATATCGGCTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003203XLOC_003203Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005667-proteinTCONS_00005667-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005667-exon-sc0000054-1575043694:658265..659458TCONS_00005667-exon-sc0000054-1575043694:658265..659458Clytia hemisphaericaexon
TCONS_00005667-exon-sc0000054-1575043694:657245..658191TCONS_00005667-exon-sc0000054-1575043694:657245..658191Clytia hemisphaericaexon
TCONS_00005667-exon-sc0000054-1510915933:658265..659458TCONS_00005667-exon-sc0000054-1510915933:658265..659458Clytia hemisphaericaexon
TCONS_00005667-exon-sc0000054-1510915933:657245..658191TCONS_00005667-exon-sc0000054-1510915933:657245..658191Clytia hemisphaericaexon
TCONS_00005667-exon-sc0000054-1491911889:658265..659458TCONS_00005667-exon-sc0000054-1491911889:658265..659458Clytia hemisphaericaexon
TCONS_00005667-exon-sc0000054-1491911889:657245..658191TCONS_00005667-exon-sc0000054-1491911889:657245..658191Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:657245..659458 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0358141	0	0	1.20802	1.20778	0.988487	1.71575	0.0316138	0	0	0.15257	0.603556	0.529715	0.64729	1.557	0.290948	0.175281	0	0	0.262373	0.231951	0.379005	0.210551	0.241562	0.382874	0.28129	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR008952Tetraspanin_EC2
IPR018499Tetraspanin/Peripherin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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