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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005745 ID=TCONS_00005745|Name=TCONS_00005745|organism=Clytia hemisphaerica|type=transcript|length=1649bp
ATAATGGTACAACTGTTGCTCCTGTATCTAATGGCAACGTCGAAGATCTC
GCTGCTAAACTACAAACTGAAGCCATGCAAAAACTTGATACACTCCAGAA
ACAATTGGTTGGAGGTGAGAAAAAAAGCAACACTGAACTCAAGAAGAAAC
ACAAGAAACGTAAAGAGTACGCTAGCGAACGCGAGAAACAGATGATGAGC
GACATCAAGAAATGGGAGGGTGAGAAAATCATGATTAAAGTGTACGATAA
TTTGCAAGAAGAGATCAAATTGAAAGGTGAAGATGTCGCTCAGCTTGAGA
AAGCATTGGATAACAGTAATATGGAAATACAGGATTTGCAAAGTGAATTT
CAAGCTGAACGAACAGATTATTTGGACACTATACGTCGACTGGAGCGTGA
TATGGAACTACAGAGTttgattttacaaaaagttCAACCGTTAATAAGAC
GTGATTGTAACTATTCTAATATCGATCGAATGAAAGTGTTATCTGAGTAT
GATGATGACTTGGGCCGATGGAAAGTCCCTGATGTCCAGGTCGAGAAAAT
TTCCTTACCTAAACCAGGTGCTGGACTTGATAATGGAATGAACCGCAGCA
ACAAATCACCAGAAAGTTCAGATTACACTTCCAGAGATGATGTTGACCGA
TATGGACAACATATTCGGAGCACACAAAACGAACACTATGCAAACCAATA
TTTTAAACCGAAACGTGCTGAGAAACTCTTGTCAGGGTCGCCGTCAAGCA
GTTTGAACTTGAATCTGAACAATAATTCTAACATACCGTCATCAATGACG
AAATTGCAGCCGTTAACGTCACCTTCAGCCACTTCGGTTCAGGACCCGAT
GGCGCTGCAACGCCGCCCACAAAAACTGGAAGCGCTACCAGCCTCTGctt
ttgagaaaaagaaaaagaagaaaaataaagaacaataTTGATTGATGCTT
CGTGAATCAAGTTTTCGTTTTCTGTTGAGAATTGGAATACTGGTGGCTAA
ATATGTGTCAATATGAGGTTCGACTGACTGGTTGATTTTGATACAAATCC
GTTAGTTTACGGCATGGGTTGGTTGGAAATGAAAGAATGGACAATATGCA
GCGAGTCCATCATTATGATATCAATTTCACGGTTTGAAATTTCTCCGAAT
ACTCCTGCTCTACCGTCGTTTATTTAGTACGGATATACCAGGGCGTCCAT
GGTTATTGTACACAGGTATTGTACTAGTGAGGGCGTCCATGTTTTGTcag
ttacgtaatttccgccattagaTAAGcgaacgttcgaatctgtagagcCG
ATTTCTGACGGTAGGACCAACAAAATAGGCCTCTCTCATATGATACTAGG
GACACTTGATAGGTGAAATAAGGTCTAAATCGAATTTCGGACCAGTTAGA
AGAACTACATATTAAGCTGAAATCTGGACATGATCAATTTAACCAGTGAC
ACAGCCTTCTTGTTAAGAAAAACAACTTAGGGGCTacgtttttttaattt
attgatCTGTGATTGATAATAATTATTTTGTTATATATAAATATTGTTCT
GTTGAATTAATCGAATGGGTtttttaaaatcgaaagtaaatgttattata
taaataatttgaatttgTAATATATTGAATACTGATATATGGTGTGCTT Run BLAST on NCBI transcript from alignment at sc0000059:694521..696905+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005745 ID=TCONS_00005745|Name=TCONS_00005745|organism=Clytia hemisphaerica|type=transcript|length=2385bp|location=Sequence derived from alignment at sc0000059:694521..696905+ (Clytia hemisphaerica)
ATAATGGTACAACTGTTGCTCCTGTATCTAATGGCAACGTCGAAGATCTC
GCTGCTAAACTACAAACTGAAGCCATGCAAAAACTTGATACACTCCAGGT
AAAAAACcatatttttttgttcatttggtTTTAACACATTCGCTATCGAG
CctttttcagaaatcaaaattttaacctCTTTGAATTTTATTGGAAGTTT
TGCTTCAAATGTCTTCAGATTGTATACCGATAGACACGCAATTTTACGTA
ATTTTACGTGTGCAGATTTATACGAACTTTGAATTTATCAGAAGCCCTTG
AGTTTGTTTGGATATGCCAAAAATCATTAACATCAATATGAGGTGTACTC
TAGATTCTTTTGTACCTGAAATGCCTAAACTAAAAAACCTCGttagctcg
gtcgttacttgacctcggacGATATTTCTCAGTaaagccctcactaaccg
gccattattattgtattatattaaaggatttgtttataattttataatta
tCGTAAATTGATCTAATGTACCGACAACCCTCATTTCAACCCTACTTTGC
AAAGCAaagcaattttagctccaaTCCGTGATTCAgacttttcttttatt
cttaTCTCCGAATAAAGGTTTCGAGATTAGATGGGGGTTGTCGGGATTAG
ATGAGGGTTGTCGGGATTAGATGGGGGTTGTCGGGATTAGATGGGGGTTG
TCGGCATTAGATGAAGGTTGTCGACATTAGAAAAACTTACGATGCAGAat
aattttcccattttttgtTACAGAAACAATTGGTTGGCGGTGAGAAAAAG
AGCAACACTGAACTCAANCCATTTTTTGTTACAGAAACAATTGGTTGGAG
GTGAGAAAAAAAGCAACACTGAACTCAAGAAGAAACACAAGAAACGTAAA
GAGTACGCTAGCGAACGCGAGAAACAGATGATGAGCGACATCAAGAAATG
GGAGGGTGAGAAAATCATGATTAAAGTGTACGATAATTTGCAAGAAGAGA
TCAAATTGAAAGGTGAAGATGTCGCTCAGCTTGAGAAAGCATTGGATAAC
AGTAATATGGAAATACAGGATTTGCAAAGTGAATTTCAAGCTGAACGAAC
AGATTATTTGGACACTATACGTCGACTGGAGCGTGATATGGAACTACAGA
GTttgattttacaaaaagttCAACCGTTAATAAGACGTGATTGTAACTAT
TCTAATATCGATCGAATGAAAGTGTTATCTGAGTATGATGATGACTTGGG
CCGATGGAAAGTCCCTGATGTCCAGGTCGAGAAAATTTCCTTACCTAAAC
CAGGTGCTGGACTTGATAATGGAATGAACCGCAGCAACAAATCACCAGAA
AGTTCAGATTACACTTCCAGAGATGATGTTGACCGATATGGACAACATAT
TCGGAGCACACAAAACGAACACTATGCAAACCAATATTTTAAACCGAAAC
GTGCTGAGAAACTCTTGTCAGGGTCGCCGTCAAGCAGTTTGAACTTGAAT
CTGAACAATAATTCTAACATACCGTCATCAATGACGAAATTGCAGCCGTT
AACGTCACCTTCAGCCACTTCGGTTCAGGACCCGATGGCGCTGCAACGCC
GCCCACAAAAACTGGAAGCGCTACCAGCCTCTGcttttgagaaaaagaaa
aagaagaaaaataaagaacaataTTGATTGATGCTTCGTGAATCAAGTTT
TCGTTTTCTGTTGAGAATTGGAATACTGGTGGCTAAATATGTGTCAATAT
GAGGTTCGACTGACTGGTTGATTTTGATACAAATCCGTTAGTTTACGGCA
TGGGTTGGTTGGAAATGAAAGAATGGACAATATGCAGCGAGTCCATCATT
ATGATATCAATTTCACGGTTTGAAATTTCTCCGAATACTCCTGCTCTACC
GTCGTTTATTTAGTACGGATATACCAGGGCGTCCATGGTTATTGTACACA
GGTATTGTACTAGTGAGGGCGTCCATGTTTTGTcagttacgtaatttccg
ccattagaTAAGcgaacgttcgaatctgtagagcCGATTTCTGACGGTAG
GACCAACAAAATAGGCCTCTCTCATATGATACTAGGGACACTTGATAGGT
GAAATAAGGTCTAAATCGAATTTCGGACCAGTTAGAAGAACTACATATTA
AGCTGAAATCTGGACATGATCAATTTAACCAGTGACACAGCCTTCTTGTT
AAGAAAAACAACTTAGGGGCTacgtttttttaatttattgatCTGTGATT
GATAATAATTATTTTGTTATATATAAATATTGTTCTGTTGAATTAATCGA
ATGGGTtttttaaaatcgaaagtaaatgttattatataaataatttgaat
ttgTAATATATTGAATACTGATATATGGTGTGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005745-exon-sc0000059-1491911889:694521..694618 | TCONS_00005745-exon-sc0000059-1491911889:694521..694618 | Clytia hemisphaerica | exon |
| TCONS_00005745-exon-sc0000059-1510915933:694521..694618 | TCONS_00005745-exon-sc0000059-1510915933:694521..694618 | Clytia hemisphaerica | exon |
| TCONS_00005745-exon-sc0000059-1575043694:694521..694618 | TCONS_00005745-exon-sc0000059-1575043694:694521..694618 | Clytia hemisphaerica | exon |
| TCONS_00005745-exon-sc0000059-1491911889:695355..696905 | TCONS_00005745-exon-sc0000059-1491911889:695355..696905 | Clytia hemisphaerica | exon |
| TCONS_00005745-exon-sc0000059-1510915933:695355..696905 | TCONS_00005745-exon-sc0000059-1510915933:695355..696905 | Clytia hemisphaerica | exon |
| TCONS_00005745-exon-sc0000059-1575043694:695355..696905 | TCONS_00005745-exon-sc0000059-1575043694:695355..696905 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:694521..696905 + |
Blast
BLAST of TCONS_00005745 vs. Swiss-Prot (Human)
Match: KIF17 (Kinesin-like protein KIF17 OS=Homo sapiens GN=KIF17 PE=2 SV=3) HSP 1 Score: 139.428 bits (350), Expect = 1.378e-34 Identity = 91/223 (40.81%), Postives = 146/223 (65.47%), Query Frame = 3
Query: 63 QTEAMQKLDTLQKQLVGGEKKSNTELXXXXXXXXEYASEREKQMMSDIKKWE---GEKIMIKVYDNLQEEIKLKGEDVAQLEKALDNSNMEIQDLQSEFQAERTDYLDTIRRLERDMELQSLILQKVQPLIRRDCNYSNIDRMKVLSEYDDDLGRWKVPDVQVEKISLPKP-GAGLDNGMNRSNKSPESSDYTSRDDVDRYGQHIRSTQNEHYANQYFKPKRA 719
Q + + +L L++Q+VGGE+ N +LK+KHK+RK YA ER KQ+++ ++ + G+ +++ VYD++QEE++ K + + ++++ L + +EI+DLQSEFQ E+ DYL TIRR ERD L +L++VQPLIRRDCNYSN++++ S +D+D G WK+P + K SLP G N R + ++ + D DRY + + +E+ A+ YF+ KRA
Sbjct: 738 QQQVLARLQLLEQQVVGGEQAKNKDLKEKHKRRKRYADERRKQLVAALQNSDEDSGDWVLLNVYDSIQEEVRAKSKLLEKMQRKLRAAEVEIKDLQSEFQLEKIDYLATIRRQERDSMLLQQLLEQVQPLIRRDCNYSNLEKILRESCWDEDNGFWKIPHPVITKTSLPVAVSTGPQNKPARKTSAADNGEPNMED--DRYRLMLSRSNSENIASNYFRSKRA 958
The following BLAST results are available for this feature:
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