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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005755 ID=TCONS_00005755|Name=TCONS_00005755|organism=Clytia hemisphaerica|type=transcript|length=4001bpRun BLAST on NCBI transcript from alignment at sc0000059:137655..181545- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005755 ID=TCONS_00005755|Name=TCONS_00005755|organism=Clytia hemisphaerica|type=transcript|length=43891bp|location=Sequence derived from alignment at sc0000059:137655..181545- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005755 vs. Swiss-Prot (Human)
Match: DPOD1 (DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1 PE=1 SV=2) HSP 1 Score: 1156.74 bits (2991), Expect = 0.000e+0 Identity = 532/802 (66.33%), Postives = 664/802 (82.79%), Query Frame = 2
Query: 755 GEWDKIAPVRILSFDIECAGRKGIFPEAEKDPIIQIANMVIRQGDKDPFIRNIFTLDTCAPIVGSDVHSYKKEADLLQAWSDFVNQVDADIITGYNIVNFDLPYLLNRATTLKIKRFPFLGRILNEKSTISTTTFQSRAYGKRENKVINIAGTVQFDLLHALLRDYKLRSYTLNSVSYHFLKEQKEDVQHSIITDLQNGNSQTRRRLAVYCMKDAILPLRLLEKLMCIINYMEMARVTGVPLSYLLSRGQQIKVVSQLLRKTKLQDLILPAQKIEAGDEYEGATVIDPIKGYYKMPIATLDFASLYPSIMMAHNLCYTSLLTREAAKEMG--QDEYIITPCGHYFVKSNLRKGLLPEILEHLLSARKKAKADLKKETDPFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISSSVTAFGRQMIERTKQLVEDKYNIKNGFKYDSKVIYGDTDSVMVRFGTDSLEESMSLGQEAAAYVSGHFVKPIKLEFEKVYFPYLLISKKRYAGLYY-TRTETYDKMDCKGIETVRRDNAPLVAKLINTCLQKLLIDKDPDGAILYTKQVISDLLCNRIDISELVITKELTKTEDEYGAKQAHSVLAEKMKKRDAGSAPKLGDRVPYVIVAGVKGSKAYEKAEDPIYVLENNIPIDTNHYLEHQLMNPLLRIFEPILGENKTQNALFKGEHTRVKTVVTAKVGGLAKFTKKTATCLGCKTVIPKELGNSAVCKHCKPKESALFQKEISSLASLEEKFNKLWTQCQRCQGSFHEDVLCTSRDCSIFYMRKKAQKDLTQQDELISRFG 3151
G W +IAP+R+LSFDIECAGRKGIFPE E+DP+IQI ++ +R G+ +PF+R TL CAPI+G+ V SY+KE DLLQAWS F+ +D D+ITGYNI NFDLPYL++RA TLK++ FPFLGR+ S I ++FQS+ G+R+ KV+++ G VQ D+L LLR+YKLRSYTLN+VS+HFL EQKEDVQHSIITDLQNGN QTRRRLAVYC+KDA LPLRLLE+LM ++N +EMARVTGVPLSYLLSRGQQ+KVVSQLLR+ + L++P K E G++Y GATVI+P+KGYY +PIATLDF+SLYPSIMMAHNLCYT+LL A+++G +D++I TP G FVK+++RKGLLP+ILE+LLSARK+AKA+L KETDP +++VLDGRQLALK+SANSVYGFTGAQVGKLPCLEIS SVT FGRQMIE+TKQLVE KY ++NG+ +KV+YGDTDSVM RFG S+ E+M+LG+EAA +VSGHF PI+LEFEKVYFPYLLISKKRYAGL + +R + +D+MDCKG+E VRRDN PLVA L+ L++LLID+DP+GA+ + + VISDLLCNRIDIS+LVITKELT+ +Y KQAH LAE+M+KRD GSAP LGDRVPYVI++ KG AY K+EDP++VLE+++PIDT +YLE QL PLLRIFEPILGE + + L +G+HTR KTV+T KVGGL F K+ C+GC+TV+ + AVC+ C+P+ES L+QKE+S L +LEE+F++LWTQCQRCQGS HEDV+CTSRDC IFYMRKK +KDL Q++L+ RFG
Sbjct: 302 GPWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAPILGAKVQSYEKEEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVQTFPFLGRVAGLCSNIRDSSFQSKQTGRRDTKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHEGLLMPVVKSEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRAASDYAGKQAHVELAERMRKRDPGSAPSLGDRVPYVIISAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLTGKVGGLLAFAKRRNCCIGCRTVLSHQ---GAVCEFCQPRESELYQKEVSHLNALEERFSRLWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVRKDLEDQEQLLRRFG 1100 HSP 2 Score: 193.356 bits (490), Expect = 7.518e-50 Identity = 96/221 (43.44%), Postives = 135/221 (61.09%), Query Frame = 3
Query: 102 STFEEDLALMEAISEESQSQKTDSQRTDSQDSQLGTLIRNPAEMNNRWTRPALPEIDTTKDAIIFQQTEVDFYTG--KPLPGMPGLSTGPSPIVRFYGVTMEGNSVLCHVHGFLPYFYVLAPKNFKIEHCETFRSDLNKVVLSDMRSNKDNITTAVVAVELENKESIYGYHRNTKLPYLRITVALQKLIAPSRRLLERGFECTGYPNKCYNTYESNIDFEV 758
S FEEDLALME + E + Q+ + + S + P+ ++ RW RP P +D + +IFQQ E+D Y G +P+PG P S G P++R +GVT EG SV CH+HGF PYFY AP F EH + +LN + D R ++ AV+AVEL ++ES++GYH + P+LRITVAL +L+AP+RRLLE+G G + YE+N+DFE+
Sbjct: 32 SQFEEDLALMEEMEAEHRLQEQEEEELQSVLEGVADGQVPPSAIDPRWLRPTPPALDPQTEPLIFQQLEIDHYVGPAQPVPGGPPPSRGSVPVLRAFGVTDEGFSVCCHIHGFAPYFYTPAPPGFGPEHMGDLQRELNLAISRDSRGGRELTGPAVLAVELCSRESMFGYHGHGPSPFLRITVALPRLVAPARRLLEQGIRVAGLGTPSFAPYEANVDFEI 252 The following BLAST results are available for this feature:
BLAST of TCONS_00005755 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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