TCONS_00005762 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005762
Unique NameTCONS_00005762
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005762 ID=TCONS_00005762|Name=TCONS_00005762|organism=Clytia hemisphaerica|type=transcript|length=684bp
CTCTTCTCCACAAAGATAACAGTGCTTGTGGATCCGCATGTCGAAATCTT
ATAAATAGTTCCATCGAAGAAATCTTCGTTCATTCATTCGTTACTTAGGT
TTTTGAACGATACAATCTacaaaaaatgaaggttttggtcTGTCTTTTTG
CTCTTTTCGTCGCTGCTAACTGTAGTATTATCCAAACGAGACCATGCGCA
GGCGATAAATCACAATCAGAGTTAATTTCTGTTGCTATCGAGCCATGTGA
ATCTGGAAATTGTGTTCTCCACAAAGGATCTGAAGCTTCAATTATCATCA
AAATGAAACCCAAATCAGACATCACTAGCCTGACCACTGAAGTTAAAGGA
AAGATTGGAATTTACATTCCATTCCCTCTCCAAAACCCTGACGCATGCGC
AACAGCAGGATTGACTTGCCCATTGAAAGCAGGACAAGAAGTCACTTACA
AATTCTCCTTACCAGTCTCCAAATACTACCCAAGTCTTTCATTGGTTGTC
AGATGGAGACTTTTCGACCAAAACAAGAACACTCAAATCTGCTTCGAATT
CCCAACTGAActtcaataaattttttattttgaaatatctttgaaataaa
atttattaaCAATCTCAGATTTTTCAATTACTTTTTCACCTAAGATGTAT
TAAATGTCCTCAACCTCGCCCCcatgtatcccag
Run BLAST on NCBI

protein sequence of TCONS_00005762-protein

>TCONS_00005762-protein ID=TCONS_00005762-protein|Name=TCONS_00005762-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MKVLVCLFALFVAANCSIIQTRPCAGDKSQSELISVAIEPCESGNCVLHK
GSEASIIIKMKPKSDITSLTTEVKGKIGIYIPFPLQNPDACATAGLTCPL
KAGQEVTYKFSLPVSKYYPSLSLVVRWRLFDQNKNTQICFEFPTELQ
Run BLAST on NCBI

transcript from alignment at sc0000059:297077..300070-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005762 ID=TCONS_00005762|Name=TCONS_00005762|organism=Clytia hemisphaerica|type=transcript|length=2994bp|location=Sequence derived from alignment at sc0000059:297077..300070- (Clytia hemisphaerica)
CTCTTCTCCACAAAGATAACAGTGCTTGTGGATCCGCATGTCGAAATCTT
ATAAATAGTTCCATCGAAGAAATCTTCGTTCATTCATTCGTTACTTAGGT
TTTTGAACGATACAATCTACAAAAAATGAAGGTTTTGGTCTGTCTTTTTG
CTCTTTTCGTCGCTGCTAACTGTAGTATTATCCAAACGAGACCATGCGCA
GGTAATGAATTTGTTCTTCATATTATCTTTGTAAATAGTTGATTATTTTG
TGGCTCAATTTTTTCAACAATGATAGTTCTTTTAATGAAACTCTGTTAAT
CTCCATCAGTAAAATAAAAAAAGTTGTACAAGTGGCTCTGGATACACTTT
TATATAAGATTCTTGGTTCTTAAACTCGCAGTTCAAAAATCGACTTCTGA
CAAATTGAAATAATAACCCTCATTATTTTTTAATATTTCTAGACAATGAT
TTTCAATCAGAGGTCGACATTTTATGAAAGATTCTTGATAATTGAACTTG
TATTCTAGTAAAACTTACATCTGAACATGACGTCACTCTTTTTTTCATAC
ATTTTCAGGCGATAAATCACAATCAGAGTTAATTTCTGTTGCTATCGAGC
CATGTGAATCTGGAAATTGTGTTCTCCACAAAGGTAAGGTTTATAAGCTT
CAAAAACAAAGTATACAGTAACATAAGACATCTTTCTCACAGCCTTTCCC
ACTGGAAAAAATAGGCCAAAATTTCGTCCCCAGTGGAAAATTAAAAGCTA
GTCTTCACTACAAAAGATTTTACCATTTTTTTCACCTCACCGAAATTTTC
CCATCCATAAAAAGTAGGGGAATATCACTCCCCGTCGACTTTCAGTCCTT
TTTTAACCCTACCTACTGAGAGCTATTTGGGTCCCTTAGAACTGAAAGGG
GGGGCACATAGTGCCCCCCGTGGATAACTTAGGATAGGAACATTATTTGG
TCATGAAATTTGGTACAGCAATGCTTGAACCTATAAAAAACAAATTTATC
AAATTTTTTTTTTGAAAATTGAATGCAATTTTTGATGACGTCATCAATTG
TATCAACAATTGGCAAAAATCACCCGAAAAACTCAAAAAAAAATGATGTT
TCTTAAAATTGCTATTGAAACAGATGGAGAAACACATTCTCCTTCATTTT
GCTTTTATTTGAAAGCTTTTACAATGTACTAAATGGAAATTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATG
AAATGGACCATTAAAGTATACCTGGTGACATGTTATAGTATCTTGGAGTA
AGCACATAAAAAAGAGCAAAATAGCCTGCGCTGCAGTTGTGGGATGGTAG
AGGTCACCGACAAACCTGTCATTAGGACTAAAATAATTGGCCAATGAGAT
AAAATTTTTAACCAAAACATTCCCCATAAAATTTGATGAAAAGTCATAAA
ATTTCAGCTTCATAGCCTCACTAGTTAAAAAATGCCAGCCAATTTTCTAA
CAGGGGGGGCACTTTGTGCCCCCCCTCTCAGTAGGTAGGGTTAAATAAAT
TATCACGTTATCACGCTAAAAACGGCCCAATCACAACATCACGCAAACCT
ATGGAGGGGGGGGCTTTATAACGTCATTATCCCTGCTTCTGATTTGATCT
ATTTCCTTTTGATTTTGTGTAGGATCTGAAGCTTCAATTATCATCAAAAT
GAAACCCAAATCAGACATCACTAGCCTGACCACTGAAGTTAAAGGAAAGA
TTGGAATTTACATTCCATTCCCTCTCCAAAACCCTGACGCATGCGCAACA
GCAGGATTGACTTGCCCATTGAAAGCAGGACAAGAAGTCACTTACAAATT
CTCCTTACCAGTCTCCAAATACTACCCAAGTGTAAGAATCTCTTTTTTTA
TGTTTAGTGTTCAAGTATCGTTTACAATCCATTATAGTGGGGGCCAAACC
TTGGATCCGTGATAACTTTTCTAGGTCGCAATCAGTGCCTTTAACGTCCA
GTCTTTCGCCAATAAAAAATGTTCTCAGGCCTTAGCAGTGGACTGAACAA
CAGTAGAAAATGTCTTCAAATACATTCAACTTTGAAATGAAATTAATGGG
TTGCGTCCTAGAAAAGCTGTCACGGATCCTAAGGTTACCTGTTACTTGAT
TCTTTTTGGATTCCTTCATTTACTTTCCGCCTGAAAAATTTTTTAACAGA
GCTACATGTACTTTACCCTTTGACTGAGATATTTCTTGAGATATTTCTTT
CTTAATATTCTTGATATGCATATAAGTCATTTTCCCGAAAAAAGGGGAAT
GTTGACCACTTTCTGTTAAGATAGAAAAATAGAAACACAGTGGTTAAAAT
TCAGCAAAGTTTTTGGATGCTTCCATTTAGAAAATACGCTAACGCATATC
AGGAATAGATATCTTATTTTCAGTAATGGTCATCATACATCATACGTAAA
TAAGTTTCTTTCCATTTATTCAAAATATTGTTTTTGTCATTTCAGCTTTC
ATTGGTTGTCAGATGGAGACTTTTCGACCAAAACAAGAACACTCAAATCT
GCTTCGAATTCCCAACTGAACTTCAATAAATTTTTTATTTTGAAATATCT
TTGAAATAAAATTTATTAACAATCTCAGATTTTTCAATTACTTTTTCACC
TAAGATGTATTAAATGTCCTCAACCTCGCCCCCATGTATCCCAG

Coding sequence (CDS) from alignment at sc0000059:297077..300070-

>TCONS_00005762 ID=TCONS_00005762|Name=TCONS_00005762|organism=Clytia hemisphaerica|type=CDS|length=1776bp|location=Sequence derived from alignment at sc0000059:297077..300070- (Clytia hemisphaerica)
CTTTCATTGGTTGTCAGATGGAGACTTTTCGACCAAAACAAGAACACTCA
AATCTGCTTCGAATTCCCAACTGAACTTCAATAAGATCTGAAGCTTCAAT
TATCATCAAAATGAAACCCAAATCAGACATCACTAGCCTGACCACTGAAG
TTAAAGGAAAGATTGGAATTTACATTCCATTCCCTCTCCAAAACCCTGAC
GCATGCGCAACAGCAGGATTGACTTGCCCATTGAAAGCAGGACAAGAAGT
CACTTACAAATTCTCCTTACCAGTCTCCAAATACTACCCAAGTGCGATAA
ATCACAATCAGAGTTAATTTCTGTTGCTATCGAGCCATGTGAATCTGGAA
ATTGTGTTCTCCACAAAGATGAAGGTTTTGGTCTGTCTTTTTGCTCTTTT
CGTCGCTGCTAACTGTAGTATTATCCAAACGAGACCATGCGCAGCTTTCA
TTGGTTGTCAGATGGAGACTTTTCGACCAAAACAAGAACACTCAAATCTG
CTTCGAATTCCCAACTGAACTTCAATAAGATCTGAAGCTTCAATTATCAT
CAAAATGAAACCCAAATCAGACATCACTAGCCTGACCACTGAAGTTAAAG
GAAAGATTGGAATTTACATTCCATTCCCTCTCCAAAACCCTGACGCATGC
GCAACAGCAGGATTGACTTGCCCATTGAAAGCAGGACAAGAAGTCACTTA
CAAATTCTCCTTACCAGTCTCCAAATACTACCCAAGTGCGATAAATCACA
ATCAGAGTTAATTTCTGTTGCTATCGAGCCATGTGAATCTGGAAATTGTG
TTCTCCACAAAGATGAAGGTTTTGGTCTGTCTTTTTGCTCTTTTCGTCGC
TGCTAACTGTAGTATTATCCAAACGAGACCATGCGCAGCTTTCATTGGTT
GTCAGATGGAGACTTTTCGACCAAAACAAGAACACTCAAATCTGCTTCGA
ATTCCCAACTGAACTTCAATAAGATCTGAAGCTTCAATTATCATCAAAAT
GAAACCCAAATCAGACATCACTAGCCTGACCACTGAAGTTAAAGGAAAGA
TTGGAATTTACATTCCATTCCCTCTCCAAAACCCTGACGCATGCGCAACA
GCAGGATTGACTTGCCCATTGAAAGCAGGACAAGAAGTCACTTACAAATT
CTCCTTACCAGTCTCCAAATACTACCCAAGTGCGATAAATCACAATCAGA
GTTAATTTCTGTTGCTATCGAGCCATGTGAATCTGGAAATTGTGTTCTCC
ACAAAGATGAAGGTTTTGGTCTGTCTTTTTGCTCTTTTCGTCGCTGCTAA
CTGTAGTATTATCCAAACGAGACCATGCGCAGCTTTCATTGGTTGTCAGA
TGGAGACTTTTCGACCAAAACAAGAACACTCAAATCTGCTTCGAATTCCC
AACTGAACTTCAATAAGATCTGAAGCTTCAATTATCATCAAAATGAAACC
CAAATCAGACATCACTAGCCTGACCACTGAAGTTAAAGGAAAGATTGGAA
TTTACATTCCATTCCCTCTCCAAAACCCTGACGCATGCGCAACAGCAGGA
TTGACTTGCCCATTGAAAGCAGGACAAGAAGTCACTTACAAATTCTCCTT
ACCAGTCTCCAAATACTACCCAAGTGCGATAAATCACAATCAGAGTTAAT
TTCTGTTGCTATCGAGCCATGTGAATCTGGAAATTGTGTTCTCCACAAAG
ATGAAGGTTTTGGTCTGTCTTTTTGCTCTTTTCGTCGCTGCTAACTGTAG
TATTATCCAAACGAGACCATGCGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003272XLOC_003272Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005762-exon-sc0000059-1575043694:299870..300070TCONS_00005762-exon-sc0000059-1575043694:299870..300070Clytia hemisphaericaexon
TCONS_00005762-exon-sc0000059-1575043694:299438..299512TCONS_00005762-exon-sc0000059-1575043694:299438..299512Clytia hemisphaericaexon
TCONS_00005762-exon-sc0000059-1575043694:297890..298098TCONS_00005762-exon-sc0000059-1575043694:297890..298098Clytia hemisphaericaexon
TCONS_00005762-exon-sc0000059-1575043694:297077..297275TCONS_00005762-exon-sc0000059-1575043694:297077..297275Clytia hemisphaericaexon
TCONS_00005762-exon-sc0000059-1510915933:299870..300070TCONS_00005762-exon-sc0000059-1510915933:299870..300070Clytia hemisphaericaexon
TCONS_00005762-exon-sc0000059-1510915933:299438..299512TCONS_00005762-exon-sc0000059-1510915933:299438..299512Clytia hemisphaericaexon
TCONS_00005762-exon-sc0000059-1510915933:297890..298098TCONS_00005762-exon-sc0000059-1510915933:297890..298098Clytia hemisphaericaexon
TCONS_00005762-exon-sc0000059-1510915933:297077..297275TCONS_00005762-exon-sc0000059-1510915933:297077..297275Clytia hemisphaericaexon
TCONS_00005762-exon-sc0000059-1491911889:299870..300070TCONS_00005762-exon-sc0000059-1491911889:299870..300070Clytia hemisphaericaexon
TCONS_00005762-exon-sc0000059-1491911889:299438..299512TCONS_00005762-exon-sc0000059-1491911889:299438..299512Clytia hemisphaericaexon
TCONS_00005762-exon-sc0000059-1491911889:297890..298098TCONS_00005762-exon-sc0000059-1491911889:297890..298098Clytia hemisphaericaexon
TCONS_00005762-exon-sc0000059-1491911889:297077..297275TCONS_00005762-exon-sc0000059-1491911889:297077..297275Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005762-proteinTCONS_00005762-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:297077..300070 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.503618	0.397966	0.864232	1.52827	1.32174	2.10495	0	0.596917	272.66	239.363	638.419	1805.86	120.157	137.812	628.031	556.742	949.621	881.931	539.948	570.228	953.956	1055.5	0.307244	0.655799	1.1606	1.85816
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003172ML_dom
IPR033916ML_Npc2-like
IPR014756Ig_E-set
Vocabulary: Biological Process
TermDefinition
GO:0032367intracellular cholesterol transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032367 intracellular cholesterol transport
Blast
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BLAST of TCONS_00005762 vs. Swiss-Prot (Human)
Match: NPC2 (Epididymal secretory protein E1 OS=Homo sapiens GN=NPC2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.076e-16
Identity = 37/112 (33.04%), Postives = 57/112 (50.89%), Query Frame = 3 
Query:  231 VAIEPCESGNCVLHKGSEASIIIKMKPKSDITSLTTEVKG-KIGIYIPFPLQNPDACATAGLTCPLKAGQEVTYKFSLPVSKYYPSLSLVVRWRLFDQNKNTQICFEFPTEL 563
            V + PC +  C L KG   S+ +         S    V G  +G+ +PFP+  PD C + G+ CP++  +  +Y   LPV   YPS+ LVV W+L D    +  C+E P ++
Sbjct:   37 VNVSPCPTQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGVPVPFPIPEPDGCKS-GINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQSLFCWEIPVQI 147
The following BLAST results are available for this feature:
BLAST of TCONS_00005762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPC25.076e-1633.04Epididymal secretory protein E1 OS=Homo sapiens GN... [more]
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