|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005769 ID=TCONS_00005769|Name=TCONS_00005769|organism=Clytia hemisphaerica|type=transcript|length=2812bpRun BLAST on NCBI protein sequence of TCONS_00005769-protein >TCONS_00005769-protein ID=TCONS_00005769-protein|Name=TCONS_00005769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=824bp MSNIHVACYIILLVTLTFSPPCCYGNNPAVAVDNRTILNIAFFTPESFRDRun BLAST on NCBI transcript from alignment at sc0000059:460898..504714- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005769 ID=TCONS_00005769|Name=TCONS_00005769|organism=Clytia hemisphaerica|type=transcript|length=43817bp|location=Sequence derived from alignment at sc0000059:460898..504714- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000059:460898..504714- >TCONS_00005769 ID=TCONS_00005769|Name=TCONS_00005769|organism=Clytia hemisphaerica|type=CDS|length=42075bp|location=Sequence derived from alignment at sc0000059:460898..504714- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005769 vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 1.569e-54 Identity = 206/695 (29.64%), Postives = 320/695 (46.04%), Query Frame = 2
Query: 419 AVELAVSYVNNNDSILPNHKIVISRYPLQVDVTRNLAGNLAHRFFQMM--GDNKGTIQGMIGPAQSKTFL-ALQQFNTKYLIPNIGYAALTDQETSFSK-DYDVRVNPKINSFLDATLHLFKRAGWKKCGILYTQGDDSNSRTNSKLVETLLIRLKKIHAKAIVVEKFKESEAFQE---STFPKLKKNDVRVIVLISRVAGLRRTFCEAYKRNYYGKKIVYIVLGLIDSRW-------HSNSECPRSELFKASNGAITFHKVNVRPDGTPTVFGKTGVEVKQGIKEMREKLYGMATRYSCKDNLDTYGFDAITNMMLGYHHIIQNLYNGSRKFVIE--RYGDELMMKQAVHSFRYNHFEGITGRVSYTDDNERKGN----YFQLATIAPRNEFSTKFDIKAYFNGDTLSFKDPNDGLASIFIGEKIPIDGLREKKVAISLNVSLKYTIWT-LTCLLILFSVMFLFINVIHRNRSLIKMXXXXXXXXXXXXXXXCYTTVIMNGIDSSTVLYYQIGHYCNTVIVVFAAGFTLLFGGLFIKTWRVYRIFTAVETLKTVAIKDPQLYLMVFLMLLIDGIICTAWLLVSPYQMTSLEVSRRV--ISNSTEYVEVYNSCVAIHDTKFEVAMFLYKGLVMLFGLFMAWETRNVNIAALNDSKQIGMSIYGVVVMGILGTICMYALEGHKFVNVRYAIVTLAI 2434
AVELA+ + N +S+L + + + Y + D + L F+ + G N + G + P+ + +LQ +N + + +AA T K Y R P N+ A L L K WK+ G L TQ S + L L + + I + ++E+F ++ KLK NDVR+I+ + FC AY+ N YG K +I+ G + W ++S C R L A G I V+ P + + +G +Q +E K G+ Y +D I + ++ L+ SR I+ Y D + + +++ +F G+TG+V + + ER G FQ + E++ D N DT+ F+ I E++ +K+++ L Y+I + LT L ++ + FLF N+ +RN+ LIKMSSP +NN+I+LG +L Y ++ + G+D S V C + G+T FG +F KTWRV+ IF V+ K + IKD +L ++V MLLID I W V P + T + S + C H T + ++ YKGL+MLFG F+AWETRNV+I ALNDSK IGMS+Y V +M I+G + NV++ IV L I
Sbjct: 80 AVELAIEQIRN-ESLLRPYFLDLRLYDTECDNAKGLKA-----FYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWN----LVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTL-TQDVQRFSEVRNDLTGVL-------YGEDI---EISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYI---GVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGVG-----PSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRN-GERMGTIKFTQFQDSREVKVGEYNAVADTLEIIN-DTIRFQGSEPPKDKTIILEQL-------RKISLPL-----YSILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIFKNVKMKKKI-IKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSMEPDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAVSFLTRDQP--NVQFCIVALVI 728 The following BLAST results are available for this feature:
BLAST of TCONS_00005769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.