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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005776 ID=TCONS_00005776|Name=TCONS_00005776|organism=Clytia hemisphaerica|type=transcript|length=3543bpRun BLAST on NCBI protein sequence of TCONS_00005776-protein >TCONS_00005776-protein ID=TCONS_00005776-protein|Name=TCONS_00005776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=617bp MRDMSSTEKITQDLNNNNITASTKQNIKSPRKPQHRQHNNDNEVVNGGAERun BLAST on NCBI transcript from alignment at sc0000059:580213..593153- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005776 ID=TCONS_00005776|Name=TCONS_00005776|organism=Clytia hemisphaerica|type=transcript|length=12941bp|location=Sequence derived from alignment at sc0000059:580213..593153- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000059:580213..593153- >TCONS_00005776 ID=TCONS_00005776|Name=TCONS_00005776|organism=Clytia hemisphaerica|type=CDS|length=18540bp|location=Sequence derived from alignment at sc0000059:580213..593153- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005776 vs. Swiss-Prot (Human)
Match: A1CF (APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1) HSP 1 Score: 509.605 bits (1311), Expect = 3.538e-166 Identity = 274/525 (52.19%), Postives = 344/525 (65.52%), Query Frame = 1
Query: 874 EAVAGLPNENALLELMDKSGYQLTHHNGQRKFG-PPPNWTGPIPLRGCEVFVGKLPRDCYEDELVPVFEKVGKIYELRLMMDYNGQNRGYAFVVYCSKRDAQKCVRTLNNYEIRKGRLLGVCQSVDNCRLFIGGIPKKVKKEDILEEISKVTDCVVDVIVYPSATDKSKNRGFAFVEYESHRSAAMARRKLMNGKIQLWGHPIAVDWAEPEQEVDEEIMDQVKVLYVRNLQLSTTEETIENLFK--QHADVERVKKIKDYCFVHFATREGARNALDNMQGKQIDEADVEVTLAKPVDKEHY----RQQRAVAKLMQMANQYQQFPSVLPELAPFNGMPPF-NPQMPGLMYPPSFPVPGGQ----------GVRPIXXXXXXXXXXXXXXXXXXYVLNGFLPQLHPILQASMAAGGGQNLTQEQMYDILPGMDLSPTNPVTLKPQSNRSPFQLLEEICQKNQWGTPIFTLHSTVTNDG-QLFLYKVTIPALGNT------YQPQKLCRNIDEAKMYSAEYTISQIA 2373
+ ++G E AL L+ ++GY L NGQRK+G PPP W P RGCE+F+GKLPRD +EDEL+P+ EK+GKIYE+R+MMD+NG NRGYAFV + +K +A+ ++ LNNYEIR GRLLGVC SVDNCRLF+GGIPK K+E+IL E+ KVT+ VVDVIVYPSA DK+KNRGFAFVEYESHR+AAMARRKL+ G+IQLWGH IAVDWAEPE EVDE+ M VK+LYVRNL LST+EE IE F + VERVKKI+DY FVHF+ RE A A+ + GK +D + +EVTLAKPVDK+ Y R ++Q Y V + G P F PQ + FP G VR I AAG R GGR Y+ L + + + + ++++YDILPGM+L+P NPVTLKPQ + Q+LEEICQKN WG P++ LHS + D QLFLYK+TIPAL + + P KL +DEAK Y+AEYT+ +
Sbjct: 9 DGLSGTQKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTY-SLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAIIRAPSVREIYMNVPVGAAGVRGLGGRGYLAYTGLGRGYQV---------KGDKREDKLYDILPGMELTPMNPVTLKPQGIKLAPQILEEICQKNNWGQPVYQLHSAIGQDQRQLFLYKITIPALASQNPAIHPFTPPKLSAFVDEAKTYAAEYTLQTLG 523 The following BLAST results are available for this feature:
BLAST of TCONS_00005776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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