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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005786 ID=TCONS_00005786|Name=TCONS_00005786|organism=Clytia hemisphaerica|type=transcript|length=850bp
aaaaaactgcagaaaacagcgtttttagacgtcaatcagcttataacttt
gtttgatatcttttgactgaataaatatttttgagaatttttttcacagt
gatcaTTTTCGATGATTAaagattcacttcagtgaaaatgatagttatag
cacttttctacaagatcttcatttttttcttcttcattttcatcttcatt
tttataatcttcttaaagttttttttatttcaaattgttccactcactac
tatctttccaatgataccaaatttataaagattgaagaattccctcaaaa
gttataggtaaaagaaaaaagagtgcacacttatcgtgaatagactttaa
tccCTCCAgtgaaatattaatttttttgaatttcaatctTAAGGCAGTTA
AATTAGAATTGAATTGTCAACACGATGGTCAAACACAAGCAAATATGTCG
AAAGAAGAATCCTCTCCAATGCTGTTTATCTTCTTAGCCTCTCTATGGTG
GAGCAGTGTACTCTGTCTCGCCCAAGATACAAAGAAAGACTTTCAAACCA
TCATTCGCTTACAAGAAGACTACTTGCTACCAAGCAACCCATGCCGATCA
TGGAATGTCTATTTCAACGCAACTAGATCGACCGGTTCATCATACGAATT
GCTTTCTTTCGAAAATGGTGTGATACAGAAACGCTTGAACTTATGTtact
ttgaaaacaaaactatgGGACTAGGAACGAACAAAGGAGCTTGCATCTGT
CCGTTTTGTAATAACGCatttaagaaaaaatacaatttccaGTTGGTTTC
GTTTAATGGCTCCAAGGAGATTTCAAAATCACAGAAAGTGCAAGTGTTCA Run BLAST on NCBI protein sequence of TCONS_00005786-protein >TCONS_00005786-protein ID=TCONS_00005786-protein|Name=TCONS_00005786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MSKEESSPMLFIFLASLWWSSVLCLAQDTKKDFQTIIRLQEDYLLPSNPC
RSWNVYFNATRSTGSSYELLSFENGVIQKRLNLCYFENKTMGLGTNKGAC
ICPFCNNAFKKKYNFQLVSFNGSKEISKSQKVQVF Run BLAST on NCBI transcript from alignment at sc0000059:708612..710162- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005786 ID=TCONS_00005786|Name=TCONS_00005786|organism=Clytia hemisphaerica|type=transcript|length=1551bp|location=Sequence derived from alignment at sc0000059:708612..710162- (Clytia hemisphaerica)
AAAAAACTGCAGAAAACAGCGTTTTTAGACGTCAATCAGCTTATAACTTT
GTTTGATATCTTTTGACTGAATAAATATTTTTGAGAATTTTTTTCACAGT
GATCATTTTCGATGATTAAAGATTCACTTCAGTGAAAATGATAGTTATAG
CACTTTTCTACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTTCATT
TTTATAATCTTCTTAAAGTTTTTTTTATTTCAAATTGTTCCACTCACTAC
TATCTTTCCAATGATACCAAATTTATAAAGATTGAAGAATTCCCTCAAAA
GTTATAGGTAAAAGAAAAAAGAGTGCACACTTATCGTGAATAGACTTTAA
TCCCTCCAGTGAAATATTAATTTTTTTGAATTTCAATCTTAAGGCAGTTA
AATTAGAATTGAATTGTCAACACGATGGTCAAACACAAGCAAATATGTCG
AAAGAAGAATCCTCTCCAATGCTGTTTATCTTCTTAGCCTCTCTATGGTG
GAGCAGTGTACTCTGTCTCGCCCAAGATACAAAGAAAGGTCTGTGATTAT
TTGGGACCTCTAACTCCCCTTGTTAGGGAGGTCAAATATTTTGTGACGTG
CATATTCTGTAACACCCTGGAATTCTAATCACTTTTAGATTCGAACCTAC
TTTTCCCTAGAAATTTACAAGATTTCAAAAAATTGCATATACCTTGGAAC
TCCTGTTATTTTTGACGGCTTAAATTCTGCTGCGCCTTATCACAACCCCC
CTGGGACGGACCTCCTCAACAGGAAAACCCAACCTAAAGATTATCGAGGG
TCATCCAATTTTTTCCATCGACTTTTTCATTGATCGAGAGAGTCGGTCGA
ACCAGATAGAACACTTCCGTTGAAATCCAGAATAAGAAAAAACATCCGAA
ATGCCGAAGGTGAGCTGTAAATAATCCCTAAGTTCTTCACTTTACGAAAC
CCCAGATCCCAATTACAGAGAGATTCTAATAGATATTATCGGAGTTTTTG
ATTTTTCTAAAAAAGCGATGCATTGTGGGATTGTTTCGAGTGTATTACAA
TAGAAATATCTCTTAGGAATTCCTCGAGGAATCAAAAACTCCGATAAGGT
TGGATAAGGTCTATTGCAGAGAATATTTCTTAAATTTTCATCTTGACGGG
AAGTGAGAAAAATGGAAATCATTGAATTAACGAGAGTCCACTGTGGTCTA
GGCTCAAAAAAAGCAAATTTCTTTTTTTTACAATTTCAGACTTTCAAACC
ATCATTCGCTTACAAGAAGACTACTTGCTACCAAGCAACCCATGCCGATC
ATGGAATGTCTATTTCAACGCAACTAGATCGACCGGTTCATCATACGAAT
TGCTTTCTTTCGAAAATGGTGTGATACAGAAACGCTTGAACTTATGTTAC
TTTGAAAACAAAACTATGGGACTAGGAACGAACAAAGGAGCTTGCATCTG
TCCGTTTTGTAATAACGCATTTAAGAAAAAATACAATTTCCAGTTGGTTT
CGTTTAATGGCTCCAAGGAGATTTCAAAATCACAGAAAGTGCAAGTGTTC
A Coding sequence (CDS) from alignment at sc0000059:708612..710162- >TCONS_00005786 ID=TCONS_00005786|Name=TCONS_00005786|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at sc0000059:708612..710162- (Clytia hemisphaerica)
ACTTTCAAACCATCATTCGCTTACAAGAAGACTACTTGCTACCAAGCAAC
CCATGCCGATCATGGAATGTCTATTTCAACGCAACTAGATCGACCGGTTC
ATCATACGAATTGCTTTCTTTCGAAAATGGTGTGATACAGAAACGCTTGA
ACTTATGTTACTTTGAAAACAAAACTATGGGACTAGGAACGAACAAAGGA
GCTTGCATCTGTCCGTTTTGTAATAACGCATTTAAGAAAAAATACAATTT
CCAGTTGGTTTCGTTTAATGGCTCCAAGGAGATTTCAAAATCACAGAAAG
TGCAAGTGTTCATGTCGAAAGAAGAATCCTCTCCAATGCTGTTTATCTTC
TTAGCCTCTCTATGGTGGAGCAGTGTACTCTGTCTCGCCCAAGATACAAA
GAAAGACTTTCAAACCATCATTCGCTTACAAGAAGACTACTTGCTACCAA
GCAACCCATGCCGATCATGGAATGTCTATTTCAACGCAACTAGATCGACC
GGTTCATCATACGAATTGCTTTCTTTCGAAAATGGTGTGATACAGAAACG
CTTGAACTTATGTTACTTTGAAAACAAAACTATGGGACTAGGAACGAACA
AAGGAGCTTGCATCTGTCCGTTTTGTAATAACGCATTTAAGAAAAAATAC
AATTTCCAGTTGGTTTCGTTTAATGGCTCCAAGGAGATTTCAAAATCACA
GAAAGTGCAAGTGTTCATGTCGAAAGAAGAATCCTCTCCAATGCTGTTTA
TCTTCTTAGCCTCTCTATGGTGGAGCAGTGTACTCTGTCTCGCCCAAGAT
ACAAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005786-exon-sc0000059-1575043694:709625..710162 | TCONS_00005786-exon-sc0000059-1575043694:709625..710162 | Clytia hemisphaerica | exon |
| TCONS_00005786-exon-sc0000059-1575043694:708612..708923 | TCONS_00005786-exon-sc0000059-1575043694:708612..708923 | Clytia hemisphaerica | exon |
| TCONS_00005786-exon-sc0000059-1510915933:709625..710162 | TCONS_00005786-exon-sc0000059-1510915933:709625..710162 | Clytia hemisphaerica | exon |
| TCONS_00005786-exon-sc0000059-1510915933:708612..708923 | TCONS_00005786-exon-sc0000059-1510915933:708612..708923 | Clytia hemisphaerica | exon |
| TCONS_00005786-exon-sc0000059-1491911889:709625..710162 | TCONS_00005786-exon-sc0000059-1491911889:709625..710162 | Clytia hemisphaerica | exon |
| TCONS_00005786-exon-sc0000059-1491911889:708612..708923 | TCONS_00005786-exon-sc0000059-1491911889:708612..708923 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:708612..710162 - |
Blast
The following BLAST results are available for this feature:
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