TCONS_00005789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005789
Unique NameTCONS_00005789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005789 ID=TCONS_00005789|Name=TCONS_00005789|organism=Clytia hemisphaerica|type=transcript|length=506bp
TAAGATCTGAGTATAAGGCAAATTTGTTTAATGTCATTTATTTGAAAACC
AATTTTCAATCATACGAAAATACCAAAAGAGTGATTTCTAAAGAGGTATT
ATGTTGGCAAAAAAAAGCTTCGCGCAAAAGAAGGTTTGAAGAACTTAGAG
GTAGCGAAAAACACCAAcaccaaaaagaaaagaagcgcAAAGCTGCAAAA
TCTTCACGTGAATTAtataaaggatcagaaaaacatgaacacgaaaaaga
aaataagcgCAAGGCTGCAAAATCCTCTTACATTAACAACAAGAAACTTA
ATTCAGGAAAAAGGGTCGAAAACTTCAGGCAGAAAAAACAGGAAGGTCCT
TCTTACATCTGTGTGATGTGTAACCGCagtatgtttaaaaaatctgtgtt
tGGTTTTGATGAACTAAAGTACTCATTAATCAactttgaagaaatagaaa
attttaatcctgTAACCTCGTTCGATGGTAATTTCTACGTATGCACAACC
TGTCAT
Run BLAST on NCBI

protein sequence of TCONS_00005789-protein

>TCONS_00005789-protein ID=TCONS_00005789-protein|Name=TCONS_00005789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
RSEYKANLFNVIYLKTNFQSYENTKRVISKEVLCWQKKASRKRRFEELRG
SEKHQHQKEKKRKAAKSSRELYKGSEKHEHEKENKRKAAKSSYINNKKLN
SGKRVENFRQKKQEGPSYICVMCNRSMFKKSVFGFDELKYSLINFEEIEN
FNPVTSFDGNFYVCTTCH
Run BLAST on NCBI

transcript from alignment at sc0000059:1..506

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005789 ID=TCONS_00005789|Name=TCONS_00005789|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at sc0000059:1..506 (Clytia hemisphaerica)
ATGACAGGTTGTGCATACGTAGAAATTACCATCGAACGAGGTTAcaggat
taaaattttctatttcttcaaagtTGATTAATGAGTACTTTAGTTCATCA
AAACCaaacacagattttttaaacatactGCGGTTACACATCACACAGAT
GTAAGAAGGACCTTCCTGTTTTTTCTGCCTGAAGTTTTCGACCCTTTTTC
CTGAATTAAGTTTCTTGTTGTTAATGTAAGAGGATTTTGCAGCCTTGcgc
ttattttctttttcgtgttcatgtttttctgatcctttataTAATTCACG
TGAAGATTTTGCAGCTTTgcgcttcttttctttttggtgTTGGTGTTTTT
CGCTACCTCTAAGTTCTTCAAACCTTCTTTTGCGCGAAGCTTTTTTTTGC
CAACATAATACCTCTTTAGAAATCACTCTTTTGGTATTTTCGTATGATTG
AAAATTGGTTTTCAAATAAATGACATTAAACAAATTTGCCTTATACTCAG
ATCTTA

Coding sequence (CDS) from alignment at sc0000059:1..506

>TCONS_00005789 ID=TCONS_00005789|Name=TCONS_00005789|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at sc0000059:1..506 (Clytia hemisphaerica)
ATGACAGGTTGTGCATACGTAGAAATTACCATCGAACGAGGTTAcaggat
taaaattttctatttcttcaaagtTGATTAATGAGTACTTTAGTTCATCA
AAACCaaacacagattttttaaacatactGCGGTTACACATCACACAGAT
GTAAGAAGGACCTTCCTGTTTTTTCTGCCTGAAGTTTTCGACCCTTTTTC
CTGAATTAAGTTTCTTGTTGTTAATGTAAGAGGATTTTGCAGCCTTGcgc
ttattttctttttcgtgttcatgtttttctgatcctttataTAATTCACG
TGAAGATTTTGCAGCTTTgcgcttcttttctttttggtgTTGGTGTTTTT
CGCTACCTCTAAGTTCTTCAAACCTTCTTTTGCGCGAAGCTTTTTTTTGC
CAACATAATACCTCTTTAGAAATCACTCTTTTGGTATTTTCGTATGATTG
AAAATTGGTTTTCAAATAAATGACATTAAACAAATTTGCCTTATACTCAG
ATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003287XLOC_003287Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005789-exon-sc0000059-1491911889:1..506TCONS_00005789-exon-sc0000059-1491911889:1..506Clytia hemisphaericaexon
TCONS_00005789-exon-sc0000059-1510915933:1..506TCONS_00005789-exon-sc0000059-1510915933:1..506Clytia hemisphaericaexon
TCONS_00005789-exon-sc0000059-1575043694:1..506TCONS_00005789-exon-sc0000059-1575043694:1..506Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005789-proteinTCONS_00005789-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:1..506 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.538346	1.01069	0.739707	1.02343	2.23593	1.87595	1.21083	2.07291	0.332921	0.316378	0.48409	0.137089	0.0983153	0.362287	0.167913	0.270241	0.185743	0.44779	0	0.132877	0	0.207021	0.635467	0.310086	1.7539	1.45453	0.767144	0.633045	0.830356	1.37688
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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