TCONS_00005790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005790
Unique NameTCONS_00005790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005790 ID=TCONS_00005790|Name=TCONS_00005790|organism=Clytia hemisphaerica|type=transcript|length=622bp
TGCCTACACAGCTCAGAGAAATGTGAAGTCAATTTCTAAGTCCATTTTTA
TCGGctccaaattttctaaaaatgcttTTTCTCGATTATTGAAACCCGTT
AGATTCATAGCACTTTTTACACTTTTAGTTTTTGCAATCCCTAAGTCTTA
CGAAACAGTCGAAATTCAAACACCTCTTGACCTTATGCATTTTTCAAGGA
ATGGAACGTTTGTTCAGTATCCAAATAATGCAGGGTATAATTTACCAGAG
CCAGTTCTTATTACTTTTAAAGTCAACTATACATTACTATTGTCAGGTGA
TATAGAACTTAATCCAGGTCCACCACAGGAAGAGATAAAAAGTATTCAAG
GTTCATTTCATCAAGGAAATTCAAAGTTTGGCGAGACTGCTGGTATACAA
TGTTCATCCaattgtttttttgcaatttgCTATGCACAGCTCAGAAAATT
ATCACTTTGGAAGACTCGTGATTTGGATTATATTTTGAATCAAGGGgatc
taaattttaaaaatcttggcATCACTAGACAGTCACCATTAATTGAAGAA
TTCCAGAAAGTTATTGCAGTTGGAAATAGTATCTGTTCACTAGATTTCAA
TATCGTTGAAGGATATTTTGAG
Run BLAST on NCBI

protein sequence of TCONS_00005790-protein

>TCONS_00005790-protein ID=TCONS_00005790-protein|Name=TCONS_00005790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
AYTAQRNVKSISKSIFIGSKFSKNAFSRLLKPVRFIALFTLLVFAIPKSY
ETVEIQTPLDLMHFSRNGTFVQYPNNAGYNLPEPVLITFKVNYTLLLSGD
IELNPGPPQEEIKSIQGSFHQGNSKFGETAGIQCSSNCFFAICYAQLRKL
SLWKTRDLDYILNQGDLNFKNLGITRQSPLIEEFQKVIAVGNSICSLDFN
IVEGYFE
Run BLAST on NCBI

transcript from alignment at sc0000059:653..1274

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005790 ID=TCONS_00005790|Name=TCONS_00005790|organism=Clytia hemisphaerica|type=transcript|length=622bp|location=Sequence derived from alignment at sc0000059:653..1274 (Clytia hemisphaerica)
CTCAAAATATCCTTCAACGATATTGAAATCTAGTGAACAGATACTATTTC CAACTGCAATAACTTTCTGGAATTCTTCAATTAATGGTGACTGTCTAGTG ATgccaagatttttaaaatttagatcCCCTTGATTCAAAATATAATCCAA ATCACGAGTCTTCCAAAGTGATAATTTTCTGAGCTGTGCATAGcaaattg caaaaaaacaattGGATGAACATTGTATACCAGCAGTCTCGCCAAACTTT GAATTTCCTTGATGAAATGAACCTTGAATACTTTTTATCTCTTCCTGTGG TGGACCTGGATTAAGTTCTATATCACCTGACAATAGTAATGTATAGTTGA CTTTAAAAGTAATAAGAACTGGCTCTGGTAAATTATACCCTGCATTATTT GGATACTGAACAAACGTTCCATTCCTTGAAAAATGCATAAGGTCAAGAGG TGTTTGAATTTCGACTGTTTCGTAAGACTTAGGGATTGCAAAAACTAAAA GTGTAAAAAGTGCTATGAATCTAACGGGTTTCAATAATCGAGAAAaagca tttttagaaaatttggagCCGATAAAAATGGACTTAGAAATTGACTTCAC ATTTCTCTGAGCTGTGTAGGCA

Coding sequence (CDS) from alignment at sc0000059:653..1274

>TCONS_00005790 ID=TCONS_00005790|Name=TCONS_00005790|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at sc0000059:653..1274 (Clytia hemisphaerica)
CTCAAAATATCCTTCAACGATATTGAAATCTAGTGAACAGATACTATTTC
CAACTGCAATAACTTTCTGGAATTCTTCAATTAATGGTGACTGTCTAGTG
ATgccaagatttttaaaatttagatcCCCTTGATTCAAAATATAATCCAA
ATCACGAGTCTTCCAAAGTGATAATTTTCTGAGCTGTGCATAGcaaattg
caaaaaaacaattGGATGAACATTGTATACCAGCAGTCTCGCCAAACTTT
GAATTTCCTTGATGAAATGAACCTTGAATACTTTTTATCTCTTCCTGTGG
TGGACCTGGATTAAGTTCTATATCACCTGACAATAGTAATGTATAGTTGA
CTTTAAAAGTAATAAGAACTGGCTCTGGTAAATTATACCCTGCATTATTT
GGATACTGAACAAACGTTCCATTCCTTGAAAAATGCATAAGGTCAAGAGG
TGTTTGAATTTCGACTGTTTCGTAAGACTTAGGGATTGCAAAAACTAAAA
GTGTAAAAAGTGCTATGAATCTAACGGGTTTCAATAATCGAGAAAaagca
tttttagaaaatttggagCCGATAAAAATGGACTTAGAAATTGACTTCAC
ATTTCTCTGAGCTGTGTAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003288XLOC_003288Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005790-exon-sc0000059-1491911889:653..1274TCONS_00005790-exon-sc0000059-1491911889:653..1274Clytia hemisphaericaexon
TCONS_00005790-exon-sc0000059-1510915933:653..1274TCONS_00005790-exon-sc0000059-1510915933:653..1274Clytia hemisphaericaexon
TCONS_00005790-exon-sc0000059-1575043694:653..1274TCONS_00005790-exon-sc0000059-1575043694:653..1274Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005790-proteinTCONS_00005790-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:653..1274 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.76034 3.25113 3.27461 3.85578 2.69559 1.18295 1.37407 2.1151 0.825812 0.45812 0.435154 0.451671 0.585745 0.206788 0.496878 0.554121 0.0877013 0.552528 0.223212 0.377443 1.05063 1.40999 0.861595 1.60565 0.376821 1.34587 2.3365 1.8551 1.00007 2.76442
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006928htUSP_central_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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