TCONS_00005792 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005792
Unique NameTCONS_00005792
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005792 ID=TCONS_00005792|Name=TCONS_00005792|organism=Clytia hemisphaerica|type=transcript|length=589bp
TATCCTCATTACAAGCAGCGAAGTTTGCCACTTTTATGGTTACACGCGAT
CTTTAATGATGACTGAACAATGAATGCAGATTATGGAACAACACTGTTTT
TAACGTATTTTGTGTATTTGCTTGTTATTTACAAAGGGAGGAGCTTTAAA
CTCCGGAGGTCGGGGTGACTGATGCACTCGGTTCGGAGATAATGTTTCCT
CCAGAAACAGCCAATGGGGGTTTTGCGCTACCTGCTTAGTCACCGTTAGT
ACTAATATACCCCTTTTTTATTGTAATAATGAATAATATTCtatttatcg
atattttttattcTGACCGGTCGTGCGGAACTATTCATATGTAACCTATT
CAATTTTATCGTCTGATGATTGTTTTTTTACATTGCTTATTGGCACGATT
GTGGAAGGACCGATGACATTTATCCTGTTATTCTCCTAACATTTTGCATG
CTTATTGGAAATCATGTATATTCAATAATTAGTATATTTTAATTCGTTCT
AGTTATGAAATTATGGTGCTTGATGTTAAAAAGATACAACAAATGATCGC
TTagcatttcatttttttattttataaccTAAACTCTGc
Run BLAST on NCBI

transcript from alignment at sc0000059:16450..17038

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005792 ID=TCONS_00005792|Name=TCONS_00005792|organism=Clytia hemisphaerica|type=transcript|length=589bp|location=Sequence derived from alignment at sc0000059:16450..17038 (Clytia hemisphaerica)
gCAGAGTTTAggttataaaataaaaaaatgaaatgctAAGCGATCATTTG
TTGTATCTTTTTAACATCAAGCACCATAATTTCATAACTAGAACGAATTA
AAATATACTAATTATTGAATATACATGATTTCCAATAAGCATGCAAAATG
TTAGGAGAATAACAGGATAAATGTCATCGGTCCTTCCACAATCGTGCCAA
TAAGCAATGTAAAAAAACAATCATCAGACGATAAAATTGAATAGGTTACA
TATGAATAGTTCCGCACGACCGGTCAgaataaaaaatatcgataaataGA
ATATTATTCATTATTACAATAAAAAAGGGGTATATTAGTACTAACGGTGA
CTAAGCAGGTAGCGCAAAACCCCCATTGGCTGTTTCTGGAGGAAACATTA
TCTCCGAACCGAGTGCATCAGTCACCCCGACCTCCGGAGTTTAAAGCTCC
TCCCTTTGTAAATAACAAGCAAATACACAAAATACGTTAAAAACAGTGTT
GTTCCATAATCTGCATTCATTGTTCAGTCATCATTAAAGATCGCGTGTAA
CCATAAAAGTGGCAAACTTCGCTGCTTGTAATGAGGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003290XLOC_003290Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005792-exon-sc0000059-1491911889:16450..17038TCONS_00005792-exon-sc0000059-1491911889:16450..17038Clytia hemisphaericaexon
TCONS_00005792-exon-sc0000059-1510915933:16450..17038TCONS_00005792-exon-sc0000059-1510915933:16450..17038Clytia hemisphaericaexon
TCONS_00005792-exon-sc0000059-1575043694:16450..17038TCONS_00005792-exon-sc0000059-1575043694:16450..17038Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:16450..17038 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.4208	11.3727	9.29308	8.74477	0	0	0.452984	1.84292	12.0565	9.9682	9.90924	15.7588	0.872851	2.84732	2.61424	1.9165	2.58138	2.34959	3.69357	1.85471	3.03715	3.43224	4.33309	3.76018	0.610929	0	0.817487	0.962828	5.25694	2.52199
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top