TCONS_00005800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005800
Unique NameTCONS_00005800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005800 ID=TCONS_00005800|Name=TCONS_00005800|organism=Clytia hemisphaerica|type=transcript|length=253bp
AGGTATTGAGAGAATTTATACCTTTCAGATGTTTCTTTGAATGATAAAAT
GTGATAACTTTGAACGATAGTATGTTCCTTGTTGATTTCAACCATCTGTT
TGTTGGAGATCGTAACTTCAGATGCTGATTGGATGGAAAATGATGACTGC
GATTGCTTCATCCACTGATGTCCATTGATCCAATTAGATGATTGGTCGAT
ATCCTGGAATGTGGCTCCTCTTCTGGTGCCAAGGTCTGCAAGGTTTTGAT
CTG
Run BLAST on NCBI

transcript from alignment at sc0000059:241112..241364

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005800 ID=TCONS_00005800|Name=TCONS_00005800|organism=Clytia hemisphaerica|type=transcript|length=253bp|location=Sequence derived from alignment at sc0000059:241112..241364 (Clytia hemisphaerica)
CAGATCAAAACCTTGCAGACCTTGGCACCAGAAGAGGAGCCACATTCCAG
GATATCGACCAATCATCTAATTGGATCAATGGACATCAGTGGATGAAGCA
ATCGCAGTCATCATTTTCCATCCAATCAGCATCTGAAGTTACGATCTCCA
ACAAACAGATGGTTGAAATCAACAAGGAACATACTATCGTTCAAAGTTAT
CACATTTTATCATTCAAAGAAACATCTGAAAGGTATAAATTCTCTCAATA
CCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003298XLOC_003298Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005800-exon-sc0000059-1491911889:241112..241364TCONS_00005800-exon-sc0000059-1491911889:241112..241364Clytia hemisphaericaexon
TCONS_00005800-exon-sc0000059-1510915933:241112..241364TCONS_00005800-exon-sc0000059-1510915933:241112..241364Clytia hemisphaericaexon
TCONS_00005800-exon-sc0000059-1575043694:241112..241364TCONS_00005800-exon-sc0000059-1575043694:241112..241364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:241112..241364 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.82987	4.22589	3.64592	0	1.97234	0	0.940175	0	0.616235	0	4.13977	0	1.42434	0	0.167505	0.168889	0.326307	0.577783	0.46181	2.58436	2.16536	7.46779	2.2641	3.36679	0.785142	1.67885	0	0	0.140705	3.99032
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top