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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005815 ID=TCONS_00005815|Name=TCONS_00005815|organism=Clytia hemisphaerica|type=transcript|length=1640bp
NCGATGTGTTGTGACGACGAAAACGAAAAATTGGAGGAAGCATACGACGC
ACATGAAACTTATGACGTACATTGCACTGAGGACGATCAAGTCCGAATCG
AGGTTGTCGCATATCGCACAGAATATAAAGTGTATCCCAAAAAGATATGC
TGCTTTAATCTGACAATTTCAGATACTCCGGTTGTTTGTGatttgaagga
gaaaattttccagaaaacctCTATACCGGTATCCATGCAAATGCTTTTTC
GGAAACGAAAAGAACCTAGGCATACGATACATGACAATGAATTGGTTGTA
GATTTAGCACACTTTGAAGACAGAAAGATAAGAGATCGAGGAAGAGAGAG
AAAGAAACGAATTCGAGTTGTTCGATTGCATCTAGCACTCCTTCATAACG
ATTCGCCTGCTTGGAAAAAAGTGTACCGCTACTACAAATTCGAATTATTG
ACAAACATCGATATTCAAGCCAATCAGATTCAAACGAATCAAATTCAAGT
GAATCAAGAGAGACAATTTCAAGAGAGGAAAGAACAATGTTTTCACTTTG
ATCGATTTCGACTTTCCCAGTATGGAATTGAAAATTAAACTTTTGACCAA
AGATGAGGAGGTCAAAGACAAAACACGGCAATTTCAAACGATGATGGAGC
TTAAGAATGGCATTagtgaaatatgaaaaattccaGTACAAGATACAATT
TTCCTATTCCAAAgttctgaaataaaaacaactgaAGATCTGAGAGAACT
TTTAGAAAACTATGATAATAATGTCGTGATAATGACACTGTTTTTCGAGG
AAAAGTTTGAAGTCAGCATTTTTCCAAACAAATCGAGTACCTTTCCTGGT
CCTGTTAAACTTagaatttcagtgaaaaattcaGATAAAGTAGCAGACTT
GAAAGATAAAATTCAAGGAAAGCTTAACGATGCTTCAAAGTATGAAGGAG
TCTTTTTGAAGAAAGGAAAGAAAGCTTTGCGGTTGGAAGACGATAAAAGT
CTTTCAGATTACAATATCACTGAGCAGTCACTGTTAGCCGCCAGTCAATA
CGTAGAAACCCATCTTCATTTCACTGACAGAGGGAAAACAATACGATACA
ATGAATGCATACCAAGAAAAAGCAAGGAGAGTATGAGCGACTTTATAAGT
AAAATGCAAGAGAAATATAAACGTTTGATTACAGAGATTCAAGACGAGAA
TGGGACTCGAGTAATAAATTTAAATCAACCattgagacatttttttaaac
tgCACATAAAGCTATGCGACTTAAAACTGCGCCTGAAATTCTTGACTAAA
GTAGAAGAACTCAAAGCACAAGAATATAAATGCGTACATCATATAAAGGG
CTTTATTCGTCAAAAATATATAAGACACCACAACGATCAAATCATTTTGC
TTGATGGTCGAAAACTCAATGATCACGAGATTCTGCAAAATCTTATCTTA
GACAGAAATCATGATATCAGTGAAAACACTTTATCATTGAATGTGATTAT
CCAAGAAAAATCGTTCGAATTGTATGTTCATCTCATATgggaaaataaag
atttgaagCTCGATGTTAAAAGTTCAGACACAATATCCGACATCAAACTT
CAAATTCAGGATAGAACGGGCGTTCCTTTGAAAAATCTCC Run BLAST on NCBI protein sequence of TCONS_00005815-protein >TCONS_00005815-protein ID=TCONS_00005815-protein|Name=TCONS_00005815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MTLFFEEKFEVSIFPNKSSTFPGPVKLRISVKNSDKVADLKDKIQGKLND
ASKYEGVFLKKGKKALRLEDDKSLSDYNITEQSLLAASQYVETHLHFTDR
GKTIRYNECIPRKSKESMSDFISKMQEKYKRLITEIQDENGTRVINLNQP
LRHFFKLHIKLCDLKLRLKFLTKVEELKAQEYKCVHHIKGFIRQKYIRHH
NDQIILLDGRKLNDHEILQNLILDRNHDISENTLSLNVIIQEKSFELYVH
LIWENKDLKLDVKSSDTISDIKLQIQDRTGVPLKNL Run BLAST on NCBI transcript from alignment at sc0000059:712504..714143 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005815 ID=TCONS_00005815|Name=TCONS_00005815|organism=Clytia hemisphaerica|type=transcript|length=1640bp|location=Sequence derived from alignment at sc0000059:712504..714143 (Clytia hemisphaerica)
GGAGATTTTTCAAAGGAACGCCCGTTCTATCCTGAATTTGAAGTTTGATG
TCGGATATTGTGTCTGAACTTTTAACATCGAGcttcaaatctttattttc
ccATATGAGATGAACATACAATTCGAACGATTTTTCTTGGATAATCACAT
TCAATGATAAAGTGTTTTCACTGATATCATGATTTCTGTCTAAGATAAGA
TTTTGCAGAATCTCGTGATCATTGAGTTTTCGACCATCAAGCAAAATGAT
TTGATCGTTGTGGTGTCTTATATATTTTTGACGAATAAAGCCCTTTATAT
GATGTACGCATTTATATTCTTGTGCTTTGAGTTCTTCTACTTTAGTCAAG
AATTTCAGGCGCAGTTTTAAGTCGCATAGCTTTATGTGcagtttaaaaaa
atgtctcaatGGTTGATTTAAATTTATTACTCGAGTCCCATTCTCGTCTT
GAATCTCTGTAATCAAACGTTTATATTTCTCTTGCATTTTACTTATAAAG
TCGCTCATACTCTCCTTGCTTTTTCTTGGTATGCATTCATTGTATCGTAT
TGTTTTCCCTCTGTCAGTGAAATGAAGATGGGTTTCTACGTATTGACTGG
CGGCTAACAGTGACTGCTCAGTGATATTGTAATCTGAAAGACTTTTATCG
TCTTCCAACCGCAAAGCTTTCTTTCCTTTCTTCAAAAAGACTCCTTCATA
CTTTGAAGCATCGTTAAGCTTTCCTTGAATTTTATCTTTCAAGTCTGCTA
CTTTATCtgaatttttcactgaaattctAAGTTTAACAGGACCAGGAAAG
GTACTCGATTTGTTTGGAAAAATGCTGACTTCAAACTTTTCCTCGAAAAA
CAGTGTCATTATCACGACATTATTATCATAGTTTTCTAAAAGTTCTCTCA
GATCTtcagttgtttttatttcagaacTTTGGAATAGGAAAATTGTATCT
TGTACtggaatttttcatatttcactAATGCCATTCTTAAGCTCCATCAT
CGTTTGAAATTGCCGTGTTTTGTCTTTGACCTCCTCATCTTTGGTCAAAA
GTTTAATTTTCAATTCCATACTGGGAAAGTCGAAATCGATCAAAGTGAAA
ACATTGTTCTTTCCTCTCTTGAAATTGTCTCTCTTGATTCACTTGAATTT
GATTCGTTTGAATCTGATTGGCTTGAATATCGATGTTTGTCAATAATTCG
AATTTGTAGTAGCGGTACACTTTTTTCCAAGCAGGCGAATCGTTATGAAG
GAGTGCTAGATGCAATCGAACAACTCGAATTCGTTTCTTTCTCTCTCTTC
CTCGATCTCTTATCTTTCTGTCTTCAAAGTGTGCTAAATCTACAACCAAT
TCATTGTCATGTATCGTATGCCTAGGTTCTTTTCGTTTCCGAAAAAGCAT
TTGCATGGATACCGGTATAGaggttttctggaaaattttctccttcaaat
CACAAACAACCGGAGTATCTGAAATTGTCAGATTAAAGCAGCATATCTTT
TTGGGATACACTTTATATTCTGTGCGATATGCGACAACCTCGATTCGGAC
TTGATCGTCCTCAGTGCAATGTACGTCATAAGTTTCATGTGCGTCGTATG
CTTCCTCCAATTTTTCGTTTTCGTCGTCACAACACATCGN Coding sequence (CDS) from alignment at sc0000059:712504..714143 >TCONS_00005815 ID=TCONS_00005815|Name=TCONS_00005815|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at sc0000059:712504..714143 (Clytia hemisphaerica)
GAGATTTTTCAAAGGAACGCCCGTTCTATCCTGAATTTGAAGTTTGATGT
CGGATATTGTGTCTGAACTTTTAACATCGAGcttcaaatctttattttcc
cATATGAGATGAACATACAATTCGAACGATTTTTCTTGGATAATCACATT
CAATGATAAAGTGTTTTCACTGATATCATGATTTCTGTCTAAGATAAGAT
TTTGCAGAATCTCGTGATCATTGAGTTTTCGACCATCAAGCAAAATGATT
TGATCGTTGTGGTGTCTTATATATTTTTGACGAATAAAGCCCTTTATATG
ATGTACGCATTTATATTCTTGTGCTTTGAGTTCTTCTACTTTAGTCAAGA
ATTTCAGGCGCAGTTTTAAGTCGCATAGCTTTATGTGcagtttaaaaaaa
tgtctcaatGGTTGATTTAAATTTATTACTCGAGTCCCATTCTCGTCTTG
AATCTCTGTAATCAAACGTTTATATTTCTCTTGCATTTTACTTATAAAGT
CGCTCATACTCTCCTTGCTTTTTCTTGGTATGCATTCATTGTATCGTATT
GTTTTCCCTCTGTCAGTGAAATGAAGATGGGTTTCTACGTATTGACTGGC
GGCTAACAGTGACTGCTCAGTGATATTGTAATCTGAAAGACTTTTATCGT
CTTCCAACCGCAAAGCTTTCTTTCCTTTCTTCAAAAAGACTCCTTCATAC
TTTGAAGCATCGTTAAGCTTTCCTTGAATTTTATCTTTCAAGTCTGCTAC
TTTATCtgaatttttcactgaaattctAAGTTTAACAGGACCAGGAAAGG
TACTCGATTTGTTTGGAAAAATGCTGACTTCAAACTTTTCCTCGAAAAAC
AGTGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005815-exon-sc0000059-1491911889:712504..714143 | TCONS_00005815-exon-sc0000059-1491911889:712504..714143 | Clytia hemisphaerica | exon |
| TCONS_00005815-exon-sc0000059-1510915933:712504..714143 | TCONS_00005815-exon-sc0000059-1510915933:712504..714143 | Clytia hemisphaerica | exon |
| TCONS_00005815-exon-sc0000059-1575043694:712504..714143 | TCONS_00005815-exon-sc0000059-1575043694:712504..714143 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:712504..714143 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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