TCONS_00006117 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006117
Unique NameTCONS_00006117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006117 ID=TCONS_00006117|Name=TCONS_00006117|organism=Clytia hemisphaerica|type=transcript|length=326bp
CCAAGTCAAACCTATCGAATAGGGAATCCCAGTTGATTGAGGTATAATCT
TTGATAAAGttatctttatcaaatttagaccagttttgtttaaaaaaagg
accAGAATCCCTGATTTTGTTGAAGTTGAGTTCAGGGAAAAGACAAAACT
GGGGTAAATGGTCAGAAATAGAATAGCAAAGGTTACCAGAGATAGTCATA
GAAGTGGCATGGCCTGAGAGAATGTTGTCAATAAGGGTTTTAGATTGATT
TGTCACTCTAGTGGGAAGTAGAATTTGAGGAAGTAAAAGGTTAGAGCCAA
GAATATCAAGGAAAGAGTTTACTGGT
Run BLAST on NCBI

protein sequence of TCONS_00006117-protein

>TCONS_00006117-protein ID=TCONS_00006117-protein|Name=TCONS_00006117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
PVNSFLDILGSNLLLPQILLPTRVTNQSKTLIDNILSGHATSMTISGNLC
YSISDHLPQFCLFPELNFNKIRDSGPFFKQNWSKFDKDNFIKDYTSINWD
SLFDRFDL
Run BLAST on NCBI

transcript from alignment at sc0000062:746169..746494

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006117 ID=TCONS_00006117|Name=TCONS_00006117|organism=Clytia hemisphaerica|type=transcript|length=326bp|location=Sequence derived from alignment at sc0000062:746169..746494 (Clytia hemisphaerica)
ACCAGTAAACTCTTTCCTTGATATTCTTGGCTCTAACCTTTTACTTCCTC
AAATTCTACTTCCCACTAGAGTGACAAATCAATCTAAAACCCTTATTGAC
AACATTCTCTCAGGCCATGCCACTTCTATGACTATCTCTGGTAACCTTTG
CTATTCTATTTCTGACCATTTACCCCAGTTTTGTCTTTTCCCTGAACTCA
ACTTCAACAAAATCAGGGATTCTggtcctttttttaaacaaaactggtct
aaatttgataaagataaCTTTATCAAAGATTATACCTCAATCAACTGGGA
TTCCCTATTCGATAGGTTTGACTTGG

Coding sequence (CDS) from alignment at sc0000062:746169..746494

>TCONS_00006117 ID=TCONS_00006117|Name=TCONS_00006117|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0000062:746169..746494 (Clytia hemisphaerica)
CCAGTAAACTCTTTCCTTGATATTCTTGGCTCTAACCTTTTACTTCCTCA
AATTCTACTTCCCACTAGAGTGACAAATCAATCTAAAACCCTTATTGACA
ACATTCTCTCAGGCCATGCCACTTCTATGACTATCTCTGGTAACCTTTGC
TATTCTATTTCTGACCATTTACCCCAGTTTTGTCTTTTCCCTGAACTCAA
CTTCAACAAAATCAGGGATTCTggtcctttttttaaacaaaactggtcta
aatttgataaagataaCTTTATCAAAGATTATACCTCAATCAACTGGGAT
TCCCTATTCGATAGGTTTGACTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003492XLOC_003492Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006117-proteinTCONS_00006117-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006117-exon-sc0000062-1491911889:746169..746494TCONS_00006117-exon-sc0000062-1491911889:746169..746494Clytia hemisphaericaexon
TCONS_00006117-exon-sc0000062-1510915933:746169..746494TCONS_00006117-exon-sc0000062-1510915933:746169..746494Clytia hemisphaericaexon
TCONS_00006117-exon-sc0000062-1575043694:746169..746494TCONS_00006117-exon-sc0000062-1575043694:746169..746494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:746169..746494 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.303212	0	0.343312	1.34351	2.04449	2.58494	5.06775	2.55466	0.255511	0.949475	0.614389	0.201938	0.201657	1.8848	0.172174	0.739076	0.45524	0.233303	0	0.337286	0	0.857967	0.347657	0.316071	0.325545	0	0.415764	0.443715	0.336542	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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