TCONS_00006288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006288
Unique NameTCONS_00006288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006288 ID=TCONS_00006288|Name=TCONS_00006288|organism=Clytia hemisphaerica|type=transcript|length=1285bp
CAAGAAATTTGTCAATCACGAAGGAAAGAAAGGGATAGAAATTGAAAGAC
CAAACTTTGTCAAAGGATCCAAAAACAACGACTGGCCTGGTGTTTTTCCT
GAATTCAGTGAAAAGATCGAAGCAAATACAGTCGAGGGGACTGTCAAATT
GATTGAAAGCGATTTCTCAACGACTGGTCCTGTTGAAAAAATTGTCTCAC
ACATCACTTTGATGGATGCAGTCCAACATTATTTCTCATACAGCATGTGC
TGTGGTTGTGGCTTTCCGGAGATCACCCTCACCGGTGAACCGGATGACTG
GAAGAAAATCCGGTCGAAAGCTGCACTGTTGAAACAATACGGTCTTGAAT
GGTGGTTGAAAGCTTTGTTACCTACTTTGGATCAGTTCGTGCTTGCTTCT
GAAGGAAAACCTGActtgaatttttggaaatcactTTGTAACATTAATGT
AGGGACAAGTTTTCGTGTTTACGAGCCCGTCACTGGCTGGATTCAGGCTT
TCTTTCTCTACCTCAATGCTGCAGGGTAcggttttgatgatttcgatcGG
TTTGCAGAAGCAAAAGATGGCGTCGCCAAGAAACAATTGCAGAAGAATGA
ATGTCTTGAACACTATATGGAAAGCTTCCAGCAGAAGGTTGGCATAAAAG
AATTTGAAGCtgataaaaacaagccaagagATAGGGAAGAATTTCGTTTC
GCTGATCCACCCTCAGGGACCAAACGAGGTATCAAATTAGAATTATTTCC
ACCCGCCCTTTCTTCCGCCCCTTTCGTTTACAAAGACACGGtgacaaata
aaaaacattcaatGGCGTTTATGGGTGGGTTAACCACCCTTGTTCAACAC
CCTAGTGGCGCCAtcgaagcaaaaataggatggGCGGTCATCGATTCTGG
CAAATGggaaccaatcaaattttataAAGAAACCTTGGTTTAGTCCAATG
CATACATATAGTGTGTTCATAAAAAAGGAAATGGAATTTGCTGTTAATTT
TTAactattaatttttttaaagttaatttttttaaagttaatttattttt
atactAAATTATATTAGATAATAGTTTATGTaattaatgatttttaaata
ccctaatttttaattttttaagatttctttttaaatcacTCAAGGTGAAA
TGTGTAGCTAGCGGTAAAGATTGTAGAATGAtctccggggggggggcact
cgttCTGAAAACGATCACACGTTCGGCCCaaaaatttactttcaaaatag
gACCTTCACAGTGCAGAAAATAAGCTACGAAATTT
Run BLAST on NCBI

transcript from alignment at sc0000066:181766..185528-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006288 ID=TCONS_00006288|Name=TCONS_00006288|organism=Clytia hemisphaerica|type=transcript|length=3763bp|location=Sequence derived from alignment at sc0000066:181766..185528- (Clytia hemisphaerica)
CAAGAAATTTGTCAATCACGAAGGAAAGAAAGGGATAGAAATTGAAAGAC
CAAACTTTGTCAAAGGATCCAAAAACAACGACTGGCCTGGTGTTTTTCCT
GAATTCAGTGAAAAGATCGAAGCAAATACAGTCGAGGGGACTGTCAAATT
GATTGAAAGCGATTTCTCAACGACTGGTCCTGTTGAAAAAATTGTAAGCT
ACTTGCTTATAAATTGTTTCTTCTTACCTCGACAAAGTTTAACATGCCCA
CACACAACGCTTTGCTCGATTTAGGATTCAAACGCTAAATATATAGGACG
ACAAATAGCTATTATCTCTCAAAACTAATACTTTCCATTCCTTGATGTCT
TCAATGCTATTTCTCCAATTTCGAGTAATTCTCTCAACACCAGGTCTCAC
ACATCACTTTGATGGATGCAGTCCAACATTATTTCTCATACAGCATGTGC
TGTGGTTGTGGCTTTCCGGAGATCACCCTCACCGGTGAACCGGATGACTG
GAAGAAAATCCGGTCGAAAGCTGCACTGTTGAAACAATACGGTCTTGAAT
GGTGGTTGAAAGCTTTGTTACCTACTTTGGATCAGTTCGTGCTTGCTTCT
GAAGGAAAACCTGACTTGAATTTTTGGAAATCACTTTGTAACATTAATGT
AGGGACAAGTTTTCGTGTTTACGAGCCCGTCACTGGCTGGATTCAGGTAA
TTTTCTTTTCATCATGTGACCTCGCTCTCACTGTAGTTTTGTTAGTCAAG
TTTTTTAAGATTAAAAATGTTTGCTTAAAAATGTGCAAATCTCGCTAAAA
AATCAAAAAACCTTCCTTAAAACTCTTGAAGTGATTTATAGTAAAAACAT
GTGTAACAGTACACTCTAGGGAAGAGGTTGAATATTTTTCACAATCAATT
CACTTTCATTATCTTACTTCTTCGTTTTCCAGGCTTTCTTTCTCTACCTC
AATGCTGCAGGGTACGGTTTTGATGATTTCGATCGGTTTGCAGAAGCAAA
AGATGGCGTCGCCAAGAAACAATTGCAGAAGAATGAATGTCTTGAACACT
ATATGGAAAGCTTCCAGCAGAAGGTTTGTATTTTATGACTTTTGTACCAT
AAGTCTACTATTTTTCAGAGAAGGCACCAAATCCTATTTCTACTGCACAT
TGGAAGACTTATACATGTTTTTTTTTTCTCATCATAACAAAGGTTGGCAT
AAAAGAATTTGAAGCTGATAAAAACAAGCCAAGAGATAGGGAAGAATTTC
GTTTCGCTGATCCACCCTCAGGGACCAAACGAGGTATCAAATTAAAATTA
TTTCCACCCGCCCTTTCTTCCGCCCCTTTCGTTTACAAAGACATGATGAC
CATGAAAAAACATTCAATGGCGTTTATGGGTGGTTTAACCACCCTTGTTC
AACACCCTGATGGTGCAATTGAGCCAAAAATGGGATGGGCTGTCATGGAT
TCTGGCAAATGGGAACAGATTAAATAAATTAAAAGACTCTTGAAACTGTT
CAGTCACTTTTTGTAGTGTGTACTGATTCTTAAAACCAATGAAAAAGAAA
TACTGAAGACCTTGCTTTCTTCTTTAAAATGAGAATAGATTTATCATATT
GTAATTTATGTAATTATAGGTATTTGATTTTTTGTATAATTTTGTAATAT
TTTGTAACTTATTTTTCAATTATTGATTCCTACACAACCTTTTGCACACG
CAATGTAATGGTAGGAGAACTTAAGAAAGCTTATGTATTTTAAGACAATT
TGCGAGCATTTCATTTTCCACAATGTATATAATGAGATATTGAAAGAGTT
TAGTTTTACTGATTTATTGTTTGTAATTTAAAAAGACTGGATTACTTGGC
AAAAGTTAGTTTTTCCGACGCAAATCAGCAAAATTTGCAATACCCTTGTT
ATGTAAAATCATTACTTCTTCTTTTTGTTTACCTTCCAGAAAATGACTGA
AAATTGTGAAAACGTGTTATCCAACAAAAAATCTACAAGAGACCTACAAG
CGTATTTTCAACTTATTTTGAAGGGACGATTTTATTCGTATTCGTTTTAT
TAATTTATTTCAGGTAAAAATTCCTATACTTGAAGAAAAAATTATCACTC
CTACTCATTACTTTCAGAAAATAATTATAAAGCGAAAAAAAGTAAAATAA
ATCACCAAAGATGCCATTTGCATTTAAAGTTGAAGATCTAAAATCAGCGG
GACCAAAAAGTTACGGAAAGAACCACTCATGGATGTTTGAACCTCAACAA
GGTCAATCTTTAGAAGAAGCTTGGAAACAACATGGTATCATTGAAGCGAT
GTCAGAAGCTCCCAAAAATATTGTGGAAACTTTCACCAAACAAAACCTAC
TGGTATGGTGTTTATCACTGGATACAAGAGAAACATCTTATCTCAGTTGC
TTTTTTACTCAAATGAAAATGCTGTTTAGTTGTAGAGGGAGGGTTTGGGA
TTGCACGGGGAAAGTGTTAGTTTAAAAGAAATGTTCTCTGTCATTAAATT
TTGAGCCCCCGTATGACTTGCCGCTGTCGCTCCATATTTTTTAAGGTTAC
ATGTTAAAAAGAGTGTAGTTAACCAATACAAACCTATACACAGGATATGT
GAAAATTCTCCATTTTCAGGTGAAATCAGTTCACGCAGCATTTTATGGTC
ATCATCCGTTGATTTTATCTCCTGATGTCATTTGGTTAACAATTGCTCAA
GGTTTAGCCAATCATTTAGTCATATCATGTCTTGAACACTATATGGAAAG
CTTCCAGCAGAAGGTTTGTGTCATATTGTCTGTATATATTTATCATAGTT
GGCTCTATTATCTGTTAATTTAGTTTCTTTTAAGTAGCAATGCTATAACA
TTAGTCAAAAGTGAAATAAAAAAGTGGCGCGATTTTTGCGTGTTTACTGT
TATATTAAGCTGCACCTATCGATGCTGTTGTCGCTTCATCTAAGTTCATC
AACAATGGTTGATAGATGATTTTAGGATATCCGAAAAACCAGAATTTTCT
TGAGCCCATGAGGTTAGGATTTGTCATAATTTGTTCTTAGGTTTCGGCTA
AAGTCTCTTATTCTTGTTAAAATGTTCGCAGAAAAAACGTGTGAATTTCT
TTTCTACAGCTTGGGGTAAAAGAGTTTGAACATCATAAAAACAAATTCAA
GCAGAAAGGACAACACTTTGCTTGGGCTGATAGACCTCCTTCTGGAACTG
AGAGAGGTATCAAATTAGAATTATTTCCACCCGCCCTTTCTTCCGCCCCT
TTCGTTTACAAAGACACGGTGACAAATAAAAAACATTCAATGGCGTTTAT
GGGTGGGTTAACCACCCTTGTTCAACACCCTAGTGGCGCCATCGAAGCAA
AAATAGGATGGGCGGTCATCGATTCTGGCAAATGGGAACCAATCAAATTT
TATAAAGAAACCTTGGTTTAGTCCAATGCATACATATAGTGTGTTCATAA
AAAAGGAAATGGAATTTGCTGTTAATTTTTAACTATTAATTTTTTTAAAG
TTAATTTTTTTAAAGTTAATTTATTTTTATACTAAATTATATTAGATAAT
AGTTTATGTAATTAATGATTTTTAAATACCCTAATTTTTAATTTTTTAAG
ATTTCTTTTTAAATCACTCAAGGTGAAATGTGTAGCTAGCGGTAAAGATT
GTAGAATGATCTCCGGGGGGGGGGCACTCGTTCTGAAAACGATCACACGT
TCGGCCCAAAAATTTACTTTCAAAATAGGACCTTCACAGTGCAGAAAATA
AGCTACGAAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003593XLOC_003593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006288-exon-sc0000066-1575043694:185336..185528TCONS_00006288-exon-sc0000066-1575043694:185336..185528Clytia hemisphaericaexon
TCONS_00006288-exon-sc0000066-1575043694:184833..185135TCONS_00006288-exon-sc0000066-1575043694:184833..185135Clytia hemisphaericaexon
TCONS_00006288-exon-sc0000066-1575043694:184456..184596TCONS_00006288-exon-sc0000066-1575043694:184456..184596Clytia hemisphaericaexon
TCONS_00006288-exon-sc0000066-1575043694:184246..184336TCONS_00006288-exon-sc0000066-1575043694:184246..184336Clytia hemisphaericaexon
TCONS_00006288-exon-sc0000066-1575043694:181766..182322TCONS_00006288-exon-sc0000066-1575043694:181766..182322Clytia hemisphaericaexon
TCONS_00006288-exon-sc0000066-1510915933:185336..185528TCONS_00006288-exon-sc0000066-1510915933:185336..185528Clytia hemisphaericaexon
TCONS_00006288-exon-sc0000066-1510915933:184833..185135TCONS_00006288-exon-sc0000066-1510915933:184833..185135Clytia hemisphaericaexon
TCONS_00006288-exon-sc0000066-1510915933:184456..184596TCONS_00006288-exon-sc0000066-1510915933:184456..184596Clytia hemisphaericaexon
TCONS_00006288-exon-sc0000066-1510915933:184246..184336TCONS_00006288-exon-sc0000066-1510915933:184246..184336Clytia hemisphaericaexon
TCONS_00006288-exon-sc0000066-1510915933:181766..182322TCONS_00006288-exon-sc0000066-1510915933:181766..182322Clytia hemisphaericaexon
TCONS_00006288-exon-sc0000066-1491911889:185336..185528TCONS_00006288-exon-sc0000066-1491911889:185336..185528Clytia hemisphaericaexon
TCONS_00006288-exon-sc0000066-1491911889:184833..185135TCONS_00006288-exon-sc0000066-1491911889:184833..185135Clytia hemisphaericaexon
TCONS_00006288-exon-sc0000066-1491911889:184456..184596TCONS_00006288-exon-sc0000066-1491911889:184456..184596Clytia hemisphaericaexon
TCONS_00006288-exon-sc0000066-1491911889:184246..184336TCONS_00006288-exon-sc0000066-1491911889:184246..184336Clytia hemisphaericaexon
TCONS_00006288-exon-sc0000066-1491911889:181766..182322TCONS_00006288-exon-sc0000066-1491911889:181766..182322Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:181766..185528 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.0944	2.88766	2.76397	2.23595	0.824706	0.444994	0.374451	0.456503	2.23433	2.33047	6.36793	1.16181	4.87353	3.48217	2.18017	2.43174	1.37626	1.94323	3.87292	4.94082	1.80703	1.78795	1.49485	1.94243	0.362174	0.7093	2.33524	4.22951	3.16838	2.26117
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top