TCONS_00006294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006294
Unique NameTCONS_00006294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006294 ID=TCONS_00006294|Name=TCONS_00006294|organism=Clytia hemisphaerica|type=transcript|length=1374bp
AAagcgaaaaaaagtaaaataaatcaCCAAAGATGCCATTTACATTCAAA
GTTGAAGATGTGAAATCAGCGGGGCCAAAAAGTTACGGAAAGAACCACTC
ACGGATGTTTGAACCTCAACAAGGTCAATCTTTAGAAGAAGCTTGGAAAC
AACATGGTATCATTGAAGCGATGTCAGATGCTCCCAAAAATGTTGTGGAA
ACTTTCACCAAACAAAACCTACTGGTGAAATCAGTTCACGCAGCATTTTA
TGGTCATCATCCGTTGATTCTATCTCCTGATGTCATTTGGTTAACAATCG
CTCAAGGTTTAGCCAATCATAtcgatcagAATGCAGAAGAACTTCGCAAG
AAATTTGTCAATCAcgaaggaaaaaaagaaatagaaatcgAAAGACCAAC
TTTTGTTAAAGGATCCAAAAACAACGACTGGCCTGGTGTTTTTCCTGAAT
TTAGTGAAAAGATCGAAGCAAATACAGTTGAGGGGACTGTCAAATTGATT
GAAAGCGATTTCTCAACGACTGGTCCTGTTGAAAAGATTGTCTCACACAT
CACTTTGATGGATGCAGTCCAACATTATTTCTCATACAGCATGTGCTGTG
GTTGTGGCTTTCCGGAGATCACCCTCACCGGTGAACCGGATGACTGGAAG
AAAATCCGGTCGAAAGCTGCACTGTTGAAACAATATGGTCTTGAATGGTG
GTTGAAAGCTTTGTTACCTGCTTTGGATCAGTTCGTGCTTGCTTCTGAAG
GAAAACCTGActtgaatttttggaaatcactTTGTAACATTAATGTAGGA
ACAAGTTTTCCTGTTTACGAGCCCGTCACTGGCTGGATTCAGGCTTTCTT
TCCCTACCTCAATGCTACAGGGTACGGTCTTGAAGATTTTGATCGGTTTG
CAGAAGCCAAAGATGGCGTCGCCAAGAAGCAATTACAGAAAAATGAATGT
CTTGAACACTATATGGAAAGCTTCCAGCAGAAGGTTGGCATAAAAGAATT
TGAAGCtgataaaaacaagccaagagATAGGGAAGAATTTCGTTTCGCTG
ATCCACCCTCAGGGACCAAACGAGGtatcaaattaaaattatttccaCCC
GCCCTTTCTTCCGCCCCTTTCGTTTACAAAGACATGATGACCATGAAAAA
ACATTCAATGGCGTTTATGGGTGGTTTAACCACCCTTGTTCAACACCCTG
ATGGTGCAATTGAGCCAAAAATGGGATGGGCTGTCATGGATTCTGGCAAA
TGGGAACagattaaataaattaaaagacTCTTGAAACTGTTCAGTCACTT
TTTGTAGTGTGTACTGATTCTTAAAaccaatgaaaaagaaatactGAAGA
CCTTgctttcttctttaaaatgag
Run BLAST on NCBI

transcript from alignment at sc0000066:183946..191238-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006294 ID=TCONS_00006294|Name=TCONS_00006294|organism=Clytia hemisphaerica|type=transcript|length=7293bp|location=Sequence derived from alignment at sc0000066:183946..191238- (Clytia hemisphaerica)
AAAGCGAAAAAAAGTAAAATAAATCACCAAAGATGCCATTTACATTCAAA
GTTGAAGATGTGAAATCAGCGGGGCCAAAAAGTTACGGAAAGAACCACTC
ACGGATGTTTGAACCTCAACAAGGTCAATCTTTAGAAGAAGCTTGGAAAC
AACATGGTATCATTGAAGCGATGTCAGATGCTCCCAAAAATGTTGTGGAA
ACTTTCACCAAACAAAACCTACTGGTATGATCTCCATTTTGTACTCTTGT
TACATAGCTACGATTTATAGACTTGATATGCAAATGTTCCATACCCCAGG
TCAATCCCGTCATGTGGGGAGAATTCGGTAGACAGAAACTTAAGAGTCAT
GTTGGTGACTAGGTATTGATCCGACAATACAGGTGGGTGAAGTAAGATTA
TACTGGCCTTGTTTACTATTAGCCTCATTGAATTAACACATTCGAACCAA
AACCAGTTTGCCATTATCTGGTACACAGTAAAACTCATAGCGTAGACGAC
TTTCAGTTGTGGCTGGTGTTAAGGAGATTTGAGAATTTATGACGGAAAGT
GTTGCCTCCTAAAAGGAACTTATACGGAAAAGAACAATTTCCGTCAGTTA
AATAGAGACACAGGAATCTGATCTACTGTTGAAATATTAATTCCCTTATT
ATTTTCAGGTGAAATCAGTTCACGCAGCATTTTATGGTCATCATCCGTTG
ATTCTATCTCCTGATGTCATTTGGTTAACAATCGCTCAAGGTTTAGCCAA
TCATATCGATCAGGTATGTTTTTCAATGACAAGTATTTGTTAAACATTTC
CAGAAAAGCTGAATATTCTTACCAACAAAATATGGACCTACATTGTTGTC
ATGAACCTATGGCTACCAAACCCTCATTCTATGGATCTGCTCAGTTTCCT
TTTCATTCTGTCACGCCAGTTATCTTTCAGGTCCTTGATTATCATACTTC
GTGCTGAACTCTCATCTGGAAATAATTAAGAACTTAATAATAAGAACTTC
GCAAGAAATTTGTCAATCACGAAGAAAAGAACGAGATTGAGATTCTATTG
AGACAGACTTTAGTACATATACAGGCCTTCATTAAATCAAAATCCGTTTG
CATTCTGTGAAAGGTATTACATATCTCAATGTAAACTTTTGATAATCTTT
CTTTAGAATGCAGAAGAACTTCGCAAGAAATTTGTCAATCACGAAGGAAA
AAAAGAAATAGAAATCGAAAGACCAACTTTTGTTAAAGGATCCAAAAACA
ACGACTGGCCTGGTGTTTTTCCTGAATTTAGTGAAAAGATCGAAGCAAAT
ACAGTTGAGGGGACTGTCAAATTGATTGAAAGCGATTTCTCAACGACTGG
TCCTGTTGAAAAGATTGTAAGTTTATAAAGCTCGTTCATGTTGTCTTTTT
ATAGCAGTGCCGTAGATACCGGAGTAGGAGGAAATCATGCTGTAAAGTTC
AAAGCCATCGCACTTCGCGTTGTCATTGCAAACAAAATTTCATTCAAAAT
GACCATACTGTTACTATATCATGTAGATTGTATCAATATCCTCTACCTTG
AAATGATTTCTCTGATATAAGCCAACTTTTCGTTACCAGGTCTCACACAT
CACTTTGATGGATGCAGTCCAACATTATTTCTCATACAGCATGTGCTGTG
GTTGTGGCTTTCCGGAGATCACCCTCACCGGTGAACCGGATGACTGGAAG
AAAATCCGGTCGAAAGCTGCACTGTTGAAACAATATGGTCTTGAATGGTG
GTTGAAAGCTTTGTTACCTGCTTTGGATCAGTTCGTGCTTGCTTCTGAAG
GAAAACCTGACTTGAATTTTTGGAAATCACTTTGTAACATTAATGTAGGA
ACAAGTTTTCCTGTTTACGAGCCCGTCACTGGCTGGATTCAGGTAATTTT
CTTTCTATCATGTGACCTCGCTCTCACTGTAGTTTTGTTAGTCAAGTTTT
TTAAGATTAAAAATGTTTGCTTAAAAATGTGCAAATCTCGCTAGAAAAAT
CAAAAAACCTTCCTTAAAACTTTTGAAATATAGTAAAAACATATGTAACA
GTACACTCTAGGGAAGGGGTTGAATATTTTGCACAATCAATTCACTTTCA
TTATCTTACTTCGTTTTCCAGGCTTTCTTTCCCTACCTCAATGCTACAGG
GTACGGTCTTGAAGATTTTGATCGGTTTGCAGAAGCCAAAGATGGCGTCG
CCAAGAAGCAATTACAGAAAAATGAATGTCTTGAACACTATATGGAAAGC
TTCCAGCAGAAGGTTTGTGTTATATTGTCTGTGTTATATTGTCTGTGTTT
GTTTCATAAGTCTACTATTTTTCAGCCCAGGAAAAAGAGAAGGCACCAAA
TCCTATTTCTACTGCACATTGGAAGACTTATACATGTTTTTTTTTCTCAT
CATAACAAAGGTTGGCATAAAAGAATTTGAAGCTGATAAAAACAAGCCAA
GAGATAGGGAAGAATTTCGTTTCGCTGATCCACCCTCAGGGACCAAACGA
GGTATCAAATTAAAATTATTTCCACCCGCCCTTTCTTCCGCCCCTTTCGT
TTACAAAGACATGATGACCATGAAAAAACATTCAATGGCGTTTATGGGTG
GTTTAACCACCCTTGTTCAACACCCTGATGGTGCAATTGAGCCAAAAATG
GGATGGGCTGTCATGGATTCTGGCAAATGGGAACAGATTAAATAAATTAA
AAGACTCTTGAAACTGTTCAGTCACTTTTTGTAGTGTGTACTGATTCTTA
AAACCAATTAAAAAGAAAAACTGAAGACCTTGCTTTCTTTCTTCTTTAAA
ATGAGAATAGATTTATCATATTGTAATTTATGTAATTAGAGGTATTTGAT
TTTTTGTATAATTTTGTAATATTTTGTAACTTATTTTCCAATTATTGATT
CCTACACAACTTTTTGCACACACAATGTAATGGTAGGAGAACTTAAGAAC
GCATATCTATTTTAAGACAATTTGCGAGTATTTCATTCTCCACGATGCAT
ATCTTCTGAGATATTGAAAGAGTTTAGTTTTACGGATTCTGAATTTTGTA
CTGATTTATTGTTTGTAATTTAATAAGAATACACTTTATAAGAATATCCA
CGATGAAAATAGCCAAAAAATTAAGAATAATGCTAAGAATATCACCATCA
TGGAATTTTGCTACTCAAGATAAGAATGCCATTTTTAGAGCATTTCCAAT
TATAAATTGTCAATTACCCCCAAATAAGGCTCACTCCTTTCACAAAAATG
CCATTTTATGTTTGAGACGTATGTAGTAAATGTTAAATCTGGTCTGAATT
AGGATCCTAACCTAAGAATGCCTCTGTAAGAATGTTTTAGGATGATTTTC
CCAAAAAAGTTAAGAATATCCATGATGAAATGGATTTACACCATTCTTAT
TAAAAAAGCGTGTACTTGATAAAAGTTACTTTTTCCGACGCAAATCACAA
AATTTGCAATACCCTGTTGTTATGTAAAATCATTACTTCTTCTTTTTGTT
TACCTTCCAGAAAATGACTGAAAATTGTGAAAACGTGTTATCCAACAAAA
AACCTACAAGTGACCTCGAAGCGTATTTTCAACTTATTTTGAAGGGGCAA
TTTTATTTGTATTTGTTTTATTAATTTATTTCAGGTAAAATGTTGTTCTT
CATATACTTGAAGAAAAAATTATCACTCCTACTCATTACTTTCAGAAAAG
AAATATAAAGCGGAAAAGAATAAAATAAATCACAAAAGATGACATTTACA
TTTAATGTTGAAGATGTGAAATCAGCGGGACCAAAAAGTTACGGAAAGAA
TCACTCATGGATGTTTGAACCTCAACAAGGTCAATCTTTAGAAGAAGCTT
GGAAACAACATGGTATCATTGAAGCGATGTCAGAAGCTCCCAAAAATGTT
GTGGAAACCTTCACCAAACAAAACCTACTGGTATGGTGTTTATCACTGGA
TACAAGAGAAACATCTTATCTCAGTTGCTTTTTTACTCAAATGCAAATGC
TGTTTAGTTGTAGAGGGAGGGTTTGGGATTGCACGGGGAAAGTNAAAGCG
TGTACTTGATAAAAGTTACTTTTTCCGACGCAAATCACAAAATTTGCAAT
ACCCTGTTTTTATGTAAAATCATTACTTCTTCTTTTTCTTTACACTCCAG
AAAATAACTGAAAATTGTGAAAACCTATTATCCAACCAAAAACCTACAAG
TGACATCGAAGCGTATTTTCAAATTATTTTGAAGGGACAATTTTATTCGT
ATTTGCTTTATTAATTTATTTCAGGTAAAAATCATATACTTGAAGAAAAA
AATTATCACTCCTACTCCTTACTTTCAGAAAAGAATTATAAAGCGAAAAA
AAGTAAAATAAATCACCAAAGATGCCATTTACATTTAAAGTTGAAGATGT
GAAATCAGCGGGACCAAAAAGTTACGGAAAGAACAGCTCACGGATATTTG
AACCTCGACAAGGTCAATCATTAGAAGAAGCTTGGAAACAACATGGTATC
ATTGAAGCGATGTCAGAAGCTCCCAAAAATATTGTGGAAACTTTCACCAA
ACAAAACCTACTGGTATGGTGTTTATCACTGGATACAAGAGAAACATCTT
ATCTCAGTTGCTTTTTTACTCAAATGCTGTTTAGTTGTAGAGGGAGGGTT
TAGAATTCACAAGAAAAGTGTTAGTTTAAAAGAAATGTTCTGTCATTAAA
TTTTGAGCCCCCGTCAGACTTGCCGCTGTCGCTCCGTATTTTTAAAGGTT
ACATGTTAAAAAGAGTATAGTTAACCTATACAACCCTATATACAGGATAT
GTGAAAATTCTCCAATTTCAGGTGAAATCAGTTCACGCAGCATTTTATGG
TCATCATCCGTTGATTTTATCTCCTGATGTCATTTGGTTAACAATTGCTC
AAGGTTTAGCCAATCATATCGATCAGGTATACTTCTTTCAATGACAAGTA
TTTGTTACAAGCTAGCCTTGGGCTAGCTGGTGGATTGCTAAAGTTTCAAA
AATAAAGAAAAAATTCAAAATGTCCATGACCAACTTTTTTTATGTTTCCT
AGTCAAGTTGAGGGTGCTGATTCCGAATTTGAATTCCAAATCGGCACCCT
CAAATTGACTAGGAAACATATCAAAAAGTTGGTCATGGACATTTCGGAAA
AAAAAGTGAAACGTTTTTGGGTAACTGCGGCCACGGCCTATATGTTCCTT
CTTCATATCAACGAAATGAAAGTAAGGACTGGAGTTTCGACCCTCCGTAT
TATTTGGGTGATTGCTAGTGAAAACAGGCATCTGCATATATTCGGACCAA
TTATCTTAAAGAAGTACGGTAATGAATTTTGAATTTCCTAACCATACCTT
CTCAAAATTCATTATATAAATTCGTTGTCCGGAAATATACATTCATCTCA
TGAAAGCTAAGGGGGTAGGCGACTTCTTACCATAATCTATTTAGTCAAGC
ATGTTATCTTTCAACCTCTTGATTGTTTAGCTATCGTGATGAACACCGAT
CAAGAAATCATCTTTCTTTAGAATGCAAAGGAACTTCGCAAAAAATTTGT
CAATCACGAAGAAAAGAAAGAGATAGGGATTCTATTGAGACAGACTTTAG
TACATATATAGGCCTTCATCAAATCAAAATCCGTTTGCATTCTGTGAAAG
GTATTACATATCTCAATGTAAACTTTTGATAATCTTCTTTTAGAATGCAG
AGGAACTCCGCAAGAAATTTGTCAATCACGAAGGAAAGAAAGGGATAGAA
ATTGAAAGACCAAACTTTGTCAAAGGATCCAAAAACAACGACTGGCCTGG
TGTTTTTCCTGAATTCAGTGAAAAGATCGAAGCAAATACAGTCGAGGGGA
CTGTCAAATTGATTGAAAGCGATTTCTCAACGACTGGTCCTGTTGAAAAA
ATTGTAAGCTACTTGCTTATAAATTGTTTCTTCTTACCTCGACAAAGTTT
AACATGCCCACACACAACGCTTTGCTCGATTTAGGATTCAAACGCTAAAT
ATATAGGACGACAAATAGCTATTATCTCTCAAAACTAATACTTTCCATTC
CTTGATGTCTTCAATGCTATTTCTCCAATTTCGAGTAATTCTCTCAACAC
CAGGTCTCACACATCACTTTGATGGATGCAGTCCAACATTATTTCTCATA
CAGCATGTGCTGTGGTTGTGGCTTTCCGGAGATCACCCTCACCGGTGAAC
CGGATGACTGGAAGAAAATCCGGTCGAAAGCTGCACTGTTGAAACAATAC
GGTCTTGAATGGTGGTTGAAAGCTTTGTTACCTACTTTGGATCAGTTCGT
GCTTGCTTCTGAAGGAAAACCTGACTTGAATTTTTGGAAATCACTTTGTA
ACATTAATGTAGGGACAAGTTTTCGTGTTTACGAGCCCGTCACTGGCTGG
ATTCAGGTAATTTTCTTTTCATCATGTGACCTCGCTCTCACTGTAGTTTT
GTTAGTCAAGTTTTTTAAGATTAAAAATGTTTGCTTAAAAATGTGCAAAT
CTCGCTAAAAAATCAAAAAACCTTCCTTAAAACTCTTGAAGTGATTTATA
GTAAAAACATGTGTAACAGTACACTCTAGGGAAGAGGTTGAATATTTTTC
ACAATCAATTCACTTTCATTATCTTACTTCTTCGTTTTCCAGGCTTTCTT
TCTCTACCTCAATGCTGCAGGGTACGGTTTTGATGATTTCGATCGGTTTG
CAGAAGCAAAAGATGGCGTCGCCAAGAAACAATTGCAGAAGAATGAATGT
CTTGAACACTATATGGAAAGCTTCCAGCAGAAGGTTTGTATTTTATGACT
TTTGTACCATAAGTCTACTATTTTTCAGAGAAGGCACCAAATCCTATTTC
TACTGCACATTGGAAGACTTATACATGTTTTTTTTTTCTCATCATAACAA
AGGTTGGCATAAAAGAATTTGAAGCTGATAAAAACAAGCCAAGAGATAGG
GAAGAATTTCGTTTCGCTGATCCACCCTCAGGGACCAAACGAGGTATCAA
ATTAAAATTATTTCCACCCGCCCTTTCTTCCGCCCCTTTCGTTTACAAAG
ACATGATGACCATGAAAAAACATTCAATGGCGTTTATGGGTGGTTTAACC
ACCCTTGTTCAACACCCTGATGGTGCAATTGAGCCAAAAATGGGATGGGC
TGTCATGGATTCTGGCAAATGGGAACAGATTAAATAAATTAAAAGACTCT
TGAAACTGTTCAGTCACTTTTTGTAGTGTGTACTGATTCTTAAAACCAAT
GAAAAAGAAATACTGAAGACCTTGCTTTCTTCTTTAAAATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003593XLOC_003593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006294-exon-sc0000066-1575043694:191015..191238TCONS_00006294-exon-sc0000066-1575043694:191015..191238Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1575043694:190476..190580TCONS_00006294-exon-sc0000066-1575043694:190476..190580Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1575043694:189873..190082TCONS_00006294-exon-sc0000066-1575043694:189873..190082Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1575043694:189347..189649TCONS_00006294-exon-sc0000066-1575043694:189347..189649Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1575043694:188977..189117TCONS_00006294-exon-sc0000066-1575043694:188977..189117Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1575043694:183946..184336TCONS_00006294-exon-sc0000066-1575043694:183946..184336Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1510915933:191015..191238TCONS_00006294-exon-sc0000066-1510915933:191015..191238Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1510915933:190476..190580TCONS_00006294-exon-sc0000066-1510915933:190476..190580Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1510915933:189873..190082TCONS_00006294-exon-sc0000066-1510915933:189873..190082Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1510915933:189347..189649TCONS_00006294-exon-sc0000066-1510915933:189347..189649Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1510915933:188977..189117TCONS_00006294-exon-sc0000066-1510915933:188977..189117Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1510915933:183946..184336TCONS_00006294-exon-sc0000066-1510915933:183946..184336Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1491911889:191015..191238TCONS_00006294-exon-sc0000066-1491911889:191015..191238Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1491911889:190476..190580TCONS_00006294-exon-sc0000066-1491911889:190476..190580Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1491911889:189873..190082TCONS_00006294-exon-sc0000066-1491911889:189873..190082Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1491911889:189347..189649TCONS_00006294-exon-sc0000066-1491911889:189347..189649Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1491911889:188977..189117TCONS_00006294-exon-sc0000066-1491911889:188977..189117Clytia hemisphaericaexon
TCONS_00006294-exon-sc0000066-1491911889:183946..184336TCONS_00006294-exon-sc0000066-1491911889:183946..184336Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:183946..191238 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.09994	12.2605	12.3356	9.60483	5.76556	4.49473	2.59769	7.58314	10.2218	6.70205	24.0568	5.79485	31.0392	18.1537	5.4784	10.5017	5.85855	2.63788	8.89017	13.9053	8.9211	1.53895	8.1353	4.78523	35.7339	42.4116	9.87798	14.1391	5.58694	6.56826
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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