TCONS_00006316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006316
Unique NameTCONS_00006316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006316 ID=TCONS_00006316|Name=TCONS_00006316|organism=Clytia hemisphaerica|type=transcript|length=335bp
GATTCAATATATCATGCCACTATGTGTGGTCATCTCCTTCATCTATTCGG
TGGCCATTTTGGTTCAAAGTATCGTCTATGAGAAAGAACAACGTTTGAAA
GAAGTAATGAAAATGATGGGTTTAAGTAATACAGTNTCCTTCATTTATTC
GGTGGCCATTTTGGTTCAAAGTATCGTCTATGAGAAAGAACAACGTTTGA
AAGAAGTAATGAAAATGATGGGTTTAAGTAATACAGTTCATTGGGCTGCT
TGGTTTATTACCAGTATCGTTGGAATGTTGACCATTGTTATTTTACTGAC
CATTGTCCTCAAGACTGGTCATATTTTACCGAACN
Run BLAST on NCBI

transcript from alignment at sc0000066:593263..593927-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006316 ID=TCONS_00006316|Name=TCONS_00006316|organism=Clytia hemisphaerica|type=transcript|length=665bp|location=Sequence derived from alignment at sc0000066:593263..593927- (Clytia hemisphaerica)
GATTCAATATATCATGCCACTATGTGTGGTCATCTCCTTCATCTATTCGG
TGGCCATTTTGGTTCAAAGTATCGTCTATGAGAAAGAACAACGTTTGAAA
GAAGTAATGAAAATGATGGGTTTAAGTAATACAGTNTCCTTCATTTATTC
GGTGGCCATTTTGGTTCAAAGTATCGTCTATGAGAAAGAACAACGTTTGA
AAGAAGTAATGAAAATGATGGGTTTAAGTAATACAGTTCATTGGGCTGCT
TGGTTTATTACCAGTATCGTTGGAATGTTGACCATTGTTATTTTACTGAC
CATTGTCCTCAAGGTGAGTGTGTGTAATTTCTCTTTTTGTATTCTGACGA
GGATATAAATATGATTTGGTGTATTACTTGTGTGTAAGGCTGACACATTA
TAACCCTTCGTGTAAACCAGCTGTCAGGCTATCAGGCTATTAATTTCTGA
GCAGATTCCGATTATTCCACGCATGGTACGTATGCATTCTAAAGGTCATG
GCTCCTTAAGAGAACCATAAATTTGTTTATATTTGATATCCTCAAAGATT
TTTGTCGTCTATTCCTTCTCTTCGTTTCATCAGAAAATAAATTGTTAAAA
CTGTGTTTAGCCGAATTATTCTTTCCATTTTCTCAATTTCCAGACTGGTC
ATATTTTACCGAACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003602XLOC_003602Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006316-exon-sc0000066-1575043694:593615..593927TCONS_00006316-exon-sc0000066-1575043694:593615..593927Clytia hemisphaericaexon
TCONS_00006316-exon-sc0000066-1575043694:593263..593284TCONS_00006316-exon-sc0000066-1575043694:593263..593284Clytia hemisphaericaexon
TCONS_00006316-exon-sc0000066-1510915933:593615..593927TCONS_00006316-exon-sc0000066-1510915933:593615..593927Clytia hemisphaericaexon
TCONS_00006316-exon-sc0000066-1510915933:593263..593284TCONS_00006316-exon-sc0000066-1510915933:593263..593284Clytia hemisphaericaexon
TCONS_00006316-exon-sc0000066-1491911889:593615..593927TCONS_00006316-exon-sc0000066-1491911889:593615..593927Clytia hemisphaericaexon
TCONS_00006316-exon-sc0000066-1491911889:593263..593284TCONS_00006316-exon-sc0000066-1491911889:593263..593284Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:593263..593927 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.553758	0	0	0	5.41782	5.68645	9.0632	10.203	4.58658	3.54827	3.96479	2.37422	4.01864	1.9956	3.71694	3.08979	1.77575	1.16444	3.76594	5.9775	3.71096	2.61503	0.471407	2.23385	11.2905	10.0409	2.13581	4.00085	9.14675	3.10972
Blast
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BLAST of TCONS_00006316 vs. Swiss-Prot (Human)
Match: ABCA2 (ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 8.061e-19
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:   77 YEKEQRLKEVMKMMGLSNTVSFIYSVAILVQSIVYEKEQRLKEVMKMMGLSNTVHWAAWFITSIVGMXXXXXXXXXXXKTGHIL 328
            Y ++  L  +  MM L   +S++YSVA+ +Q IV EKE RLKEVMK MGL+N VHW AWFIT  V +   V  LT +LK G +L
Sbjct:  694 YTRDDFLFVIEHMMPLCMVISWVYSVAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVL 777
The following BLAST results are available for this feature:
BLAST of TCONS_00006316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABCA28.061e-1951.19ATP-binding cassette sub-family A member 2 OS=Homo... [more]
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