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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006324 ID=TCONS_00006324|Name=TCONS_00006324|organism=Clytia hemisphaerica|type=transcript|length=874bp
CGATAATCGAAGAGATGAAGATTCGAAGAGCACCGAACATAGTCTTAATG
TTAATGAGAAAACAGAGGCGCCAAGTGCATCTATATCATCAGCAACAAAA
GATAAAGTTATCGCATTGCGTTTGGAAGAATGGCCGATGGatataaaaaa
ggaatttctCGACAGGAACCCAAATCTCGAAAAATGTACAGAAGCTCCGT
TGTTCCTGATACCGAAAAGTCATCCTGAAAGTCAAAACCCTATGGTTGAA
TGGAGATTGTCATTTTCGTTGGTCGAAAAGGAAATTCTCCTAAATCTCCC
ATTGTCCTGGAGAAAAGTCTATTTGATCATTAAGTCAAAGCTCAAGAATT
TGAACAAGCAACATGCAACCGCAAGTAACCAAACCATGTCGCAAAATTAT
CAAACTCCCTTGAAAACATATCACCTCAAAACCGTTTTACTGTGGCTTTA
CGAGAAACATACTGACTTTGATGAAAACGATATCATAGGATTATTGCAAC
TTGTTGTCGATCGTTTATTAGAAGCATTCTCAGAGATGAAGCTGCCAAAC
TATTTCATACCcagtcaaaatattttaatcggtaaacaaaaacttgaacc
AAACAATatcgaaattttgaaacaggATTTTTCCATAGAGAGACTCTTTG
ATATACGTGGAAATATGACCTCTAGAGCAACaaagctaaaagaaaaagat
tttcgtgACAACATACGTGATAATGCTAACTTGAAGTTGATGTTTGTTGC
AGAAATTTATAATGAATGTATGATACACCTGACGTCATTTCTATCACTGC
TTTTCCATGAAGATAAAGATAACAATTTATCAAAGGATTATCTCTTCCTT
CTAAAATCAGTTTATCAATTGGCA Run BLAST on NCBI protein sequence of TCONS_00006324-protein >TCONS_00006324-protein ID=TCONS_00006324-protein|Name=TCONS_00006324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
DNRRDEDSKSTEHSLNVNEKTEAPSASISSATKDKVIALRLEEWPMDIKK
EFLDRNPNLEKCTEAPLFLIPKSHPESQNPMVEWRLSFSLVEKEILLNLP
LSWRKVYLIIKSKLKNLNKQHATASNQTMSQNYQTPLKTYHLKTVLLWLY
EKHTDFDENDIIGLLQLVVDRLLEAFSEMKLPNYFIPSQNILIGKQKLEP
NNIEILKQDFSIERLFDIRGNMTSRATKLKEKDFRDNIRDNANLKLMFVA
EIYNECMIHLTSFLSLLFHEDKDNNLSKDYLFLLKSVYQLA Run BLAST on NCBI transcript from alignment at sc0000066:637058..639405- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006324 ID=TCONS_00006324|Name=TCONS_00006324|organism=Clytia hemisphaerica|type=transcript|length=2348bp|location=Sequence derived from alignment at sc0000066:637058..639405- (Clytia hemisphaerica)
CGATAATCGAAGAGATGAAGATTCGAAGAGCACCGAACATAGTCTTAATG
TTAATGAGAAAACAGAGGCGCCAAGTGCATCTATATCATCAGCAACAAAA
GATAAAGTTATCGCATTGCGTTTGGAAGAATGGCCGATGGATATAAAAAA
GGAATTTCTCGACAGGAACCCAAATCTCGAAAAATGTACAGGTAAGCTAA
GTTGACGCTTCAAATGACATCACTCGATGAAAATTAGAAAGCTTCTAATT
AAATGCTTATTTTTTGAAATAAGAACTCAATTTTTGGTTAAATCCTAAGA
ACAGATTTAAAAAGCCCTCAAAAAAGCCCCAAAATTTACAGTAAACTCTT
GCTCATTCAAACTGCTATTATTCAAATCCAGTGCCGTAGCAACGGGGGGG
GGGGGGGGGAAGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTT
CCCCGGCCTTAATGCGTTTACCAACTACCAGCAAGTGACGAATTTTTCCC
CGACGAAAATTTTCCCCGATAAGGTAAATAAGATTCCCCTTTCGAGTTCG
AATTAGCGCTCCAAGTGTCCAAAATTTTTTGTTTTATTTGCCATTTTTCA
GCCAATGAAAAAGAAATGAGGACTTCTAACAAATTATATTTTGTTGAAAA
GATAATTCAGAGCAGTATATTTTCTAAGAAAAATAATTCAAAAAAAGTCT
AGAAAATTTTCAGATGAAAAATGAGTGAGAAAATGAACTTTGTATTATTT
GGTGTTAAAAATTTCATGTTTTATACAGAGGTACTTTGAAGCCTCCTGAT
TCCAGCCATATAGTTATTTTTCGTAATTTATTTGCAATGAAGGTTGCAAC
CTCTAGAAAGTAGCTCGTTGGAGTTAAAAAAAAACAGCTTTTTGCTATTT
TTTTACTCCAACTCTTTGCAAAATCAATATAAAAGTAATTTCATATTTGA
ATACAGGAGGCTTCAAAGTATCTCTGTACCAAAGATGAAGTTTTTAGCAC
TAAAGTATAAAAATTTTTATTTTGTTCTCTTAATTTTCTAAAATATCATA
GTGCTCTGAAATATCTTTCTAACCATATATTATACGTTAAATTTGTAGCA
TTCGTTGAAAAACGGCAAACAAAACAATTAGTGCACTCACTTACAAGCGA
CATTGACCATTTTTATTATATAGATTNACGGCAAACAAAAAAATTAGTGC
ACTCACTTACAAGCGACATTGGCCACTTTTATTATATAGATTCTCTTCCA
CTTTTTCCAGGTCCCCTTTATATAGTCACTCGAGTCATTAAATTGTGCCA
ATAATTTTCGTTTAGAAGCTCCGTTGTTCCTGATACCGAAAAGTCATCCT
GAAAGTCAAAACCCTATGGTTGAATGGAGATTGTCATTTTCGTTGGTCGA
AAAGGAAATTCTCCTAAATCTCCCATTGTCCTGGAGAAAAGTCTATTTGA
TCATTAAGTCAAAGCTCAAGAATTTGAACAAGCAACATGCAACCGCAAGT
AACCAAACCATGTCGCAAAATTATCAAACTCCCTTGAAAACATATCACCT
CAAAACCGTTTTACTGTGGCTTTACGAGAAACATACTGACTTTGATGAAA
ACGATATCATAGGATTATTGCAACTTGTTGTCGATCGTTTATTAGAAGCA
TTCTCAGAGATGAAGCTGCCAAACTATTTCATACCCAGTCAAAATATTTT
AATCGGTAAACAAAAACTTGAACCAAACAATATCGAAATTTTGAAACAGG
ATTTTTCCATAGAGAGACTCTTTGATATACGTGGAAATATGACCTCTAGA
GCAACAAAGCTAAAAGAAAAAGATTTTCGTGACAACATACGTGATAATGC
TAACTTGAAGTTGATGTTTGTTGCAGAAATTTATAATGAATGTATGATAC
ACCTGACGTCATTTCTATCACTGCTTTTCCATGAAGATAAAGATAACAAT
TTATCAAAGGATTATCTCTTCCTTCTAAAATCAGTTTATCAATTGGCA Coding sequence (CDS) from alignment at sc0000066:637058..639405- >TCONS_00006324 ID=TCONS_00006324|Name=TCONS_00006324|organism=Clytia hemisphaerica|type=CDS|length=1746bp|location=Sequence derived from alignment at sc0000066:637058..639405- (Clytia hemisphaerica)
AAGCTCCGTTGTTCCTGATACCGAAAAGTCATCCTGAAAGTCAAAACCCT
ATGGTTGAATGGAGATTGTCATTTTCGTTGGTCGAAAAGGAAATTCTCCT
AAATCTCCCATTGTCCTGGAGAAAAGTCTATTTGATCATTAAGTCAAAGC
TCAAGAATTTGAACAAGCAACATGCAACCGCAAGTAACCAAACCATGTCG
CAAAATTATCAAACTCCCTTGAAAACATATCACCTCAAAACCGTTTTACT
GTGGCTTTACGAGAAACATACTGACTTTGATGAAAACGATATCATAGGAT
TATTGCAACTTGTTGTCGATCGTTTATTAGAAGCATTCTCAGAGATGAAG
CTGCCAAACTATTTCATACCCAGTCAAAATATTTTAATCGGTAAACAAAA
ACTTGAACCAAACAATATCGAAATTTTGAAACAGGATTTTTCCATAGAGA
GACTCTTTGATATACGTGGAAATATGACCTCTAGAGCAACAAAGCTAAAA
GAAAAAGATTTTCGTGACAACATACGTGATAATGCTAACTTGAAGTTGAT
GTTTGTTGCAGAAATTTATAATGAATGTATGATACACCTGACGTCATTTC
TATCACTGCTTTTCCATGAAGATAAAGATAACAATTTATCAAAGGATTAT
CTCTTCCTTCTAAAATCAGTTTATCAATTGGCAGATAATCGAAGAGATGA
AGATTCGAAGAGCACCGAACATAGTCTTAATGTTAATGAGAAAACAGAGG
CGCCAAGTGCATCTATATCATCAGCAACAAAAGATAAAGTTATCGCATTG
CGTTTGGAAGAATGGCCGATGGATATAAAAAAGGAATTTCTCGACAGGAA
CCCAAATCTCGAAAAATGTACAGAAGCTCCGTTGTTCCTGATACCGAAAA
GTCATCCTGAAAGTCAAAACCCTATGGTTGAATGGAGATTGTCATTTTCG
TTGGTCGAAAAGGAAATTCTCCTAAATCTCCCATTGTCCTGGAGAAAAGT
CTATTTGATCATTAAGTCAAAGCTCAAGAATTTGAACAAGCAACATGCAA
CCGCAAGTAACCAAACCATGTCGCAAAATTATCAAACTCCCTTGAAAACA
TATCACCTCAAAACCGTTTTACTGTGGCTTTACGAGAAACATACTGACTT
TGATGAAAACGATATCATAGGATTATTGCAACTTGTTGTCGATCGTTTAT
TAGAAGCATTCTCAGAGATGAAGCTGCCAAACTATTTCATACCCAGTCAA
AATATTTTAATCGGTAAACAAAAACTTGAACCAAACAATATCGAAATTTT
GAAACAGGATTTTTCCATAGAGAGACTCTTTGATATACGTGGAAATATGA
CCTCTAGAGCAACAAAGCTAAAAGAAAAAGATTTTCGTGACAACATACGT
GATAATGCTAACTTGAAGTTGATGTTTGTTGCAGAAATTTATAATGAATG
TATGATACACCTGACGTCATTTCTATCACTGCTTTTCCATGAAGATAAAG
ATAACAATTTATCAAAGGATTATCTCTTCCTTCTAAAATCAGTTTATCAA
TTGGCAGATAATCGAAGAGATGAAGATTCGAAGAGCACCGAACATAGTCT
TAATGTTAATGAGAAAACAGAGGCGCCAAGTGCATCTATATCATCAGCAA
CAAAAGATAAAGTTATCGCATTGCGTTTGGAAGAATGGCCGATGGATATA
AAAAAGGAATTTCTCGACAGGAACCCAAATCTCGAAAAATGTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006324-exon-sc0000066-1575043694:639215..639405 | TCONS_00006324-exon-sc0000066-1575043694:639215..639405 | Clytia hemisphaerica | exon |
| TCONS_00006324-exon-sc0000066-1575043694:637058..637740 | TCONS_00006324-exon-sc0000066-1575043694:637058..637740 | Clytia hemisphaerica | exon |
| TCONS_00006324-exon-sc0000066-1510915933:639215..639405 | TCONS_00006324-exon-sc0000066-1510915933:639215..639405 | Clytia hemisphaerica | exon |
| TCONS_00006324-exon-sc0000066-1510915933:637058..637740 | TCONS_00006324-exon-sc0000066-1510915933:637058..637740 | Clytia hemisphaerica | exon |
| TCONS_00006324-exon-sc0000066-1491911889:639215..639405 | TCONS_00006324-exon-sc0000066-1491911889:639215..639405 | Clytia hemisphaerica | exon |
| TCONS_00006324-exon-sc0000066-1491911889:637058..637740 | TCONS_00006324-exon-sc0000066-1491911889:637058..637740 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:637058..639405 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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