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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006363 ID=TCONS_00006363|Name=TCONS_00006363|organism=Clytia hemisphaerica|type=transcript|length=2064bp
ATGAAACATTACAATAAATACCAAATAAATACACTTCAACTTTCAGCCAG
GTATTACATTCAATTTATAATCCTTCGACGCAACGCTTATGGCGGTTAGA
GCTTGCACCTGATTTacgatttttcaaatatttgtctttcttcttctttg
atgatttctcataaaattgtttTCGGTATTCTGTTGAAGTCTTTTTCAAT
TTCGAATTCTTATCCTTATTCTTACTAGAATCCAGTTTTGCCGTTAAATC
GAGAAAAATCGCCATCTTCAAATTTTCCAACTCGACAGGATCAAATGCCT
GTAACTCTGCCTCTTTCAACAGATCACGCGACGCGGAATCAACTTGTTCG
CGTACTGTAGATTTCAACAAATCAAGTTCAAATTCNTCTTTCAACAGATC
ACGCGACGCGGAATCAACTTGTTCGCGTACTGTAGATTTCAACGAATCAA
GTTCAAATTCATCCATCTCTGACTCAGACTCATCTTCTTTTTCTACTGAG
CATGCGTCAATTAATCGCATCGTCAAAGCAACCTCAATTTGGTCCCAGAT
CGTTTGTTCAGAAGGGTCCCGCTCTAAAGAACTAAAATGTCCCATTAAAA
CATCTCTGTTCTCACTTAAAATCACAAAATCGTTATCATTTTCACCAATG
AGATCACCAAACTCAACGTCGCCAGCTTCATCAAGCCTGTCAGTAACTTT
CAAATATTCTAAAACACTGGTGTAAATATCATCAAAAAAGGATGTGTGAA
TATGCTGGATGACTTGGTCTCGATTATTTTCATCTTCTATTTCTTCCGTT
TTGCTCGATTGTTCAATTAAATCTAAGACGGTCAAGATCTCTTCATTCAT
ATGAGCTTTATTACCACGATACCCATAATGGTTCTTTGCCTTTGTTTCTG
GTTCTGAAAAACTAGAAAAAGCAGAAAATCCAGATTCTGGTCGACCCGTC
ATTTCAGTGTCTGTCAAAAACCAACCATCCGCATCATCCTGAAAATCAAC
CTCTGAATCAAATTGACCAGAAGTACGGCGTAAATGCAGCCTCTGTCCTT
CCTTCTTGTACCAATCTCGAATTTCCGAGCTCGAAACAGAATCGTATGAA
ATCGAGCTTCCTTGCCTCGAGTTTGAGTCAGCAGATTTGGAGCTCTGTTC
TCTCGATTTGGGTCCGGTTGATTTTGGTAACCTCGGATTCAAAGCCGGCG
ATTTTCGACTTTGATTCGCGGACTGTTCGTCCCTTGTTGTAATTGGCTTA
GAGTTTCCTTGCCTTGAGTTTGAGGCATTGGATTTAGAGCTCGGTTCTCT
CGATTTGGGTTCGGTTGATTTTGGTAGCTTCGGATTCAAAGTAGTCGACT
TTCCGCTCACATTTCCATTTCTGGACTTTGAGGCATTGACCTTTGAGCTC
GTTTCTCTTGATTTAGTTTCGTTCGGGTTAATTTGCTGTGACCTTTGGTT
AGAAGCAGACTTTGTAAAGCTTGCTGAGATAGATGTTCGTAGATTTTTGG
GTTTTTTCTTTCCTCTCGCAATTTCATTggctgaaaaagaaattctctgC
TTTGTCTTCGAGTTTTTTAAAATGATAGGGCTTTGATTTCCAGGTTTCAG
TATTGTAGCTGGTTGTGATTTTTTTCTATCTTTCGTCGTGCTAGCTGAAA
AAGACACTTGTTGTCTCGGTATTCGAACGTTTTTATCAGCAATCACTTTC
TCTGATGGTATATTTCGTTCTCTGGGGCGTATGGGTGCCGAATGTCTTTC
ATTGGGCGGTGTGCGAAACTTGACAGAGCTTCCCGCACTCACCACATGTT
TTGCATTTTTATTAGTGACTGAACTCCACTGTCTGGAATCGATCGAGAGA
GAACTACCCTTTCTCGTGTTTGCTTTGCCAACCGTTGACGTACCATGTCT
CGATTCAATCCGAGGTTCAAGTCTTTCTGAGTTCATCAGAGTTATATCGC
CATCAGCGTCACTGCAAATGGACATTGACATCAGAGTTTCTGAGTAAGAT
CTATCTGCCAGTATCCTTTTTCCAGTATTAGGTGACATTTgtaccaaaaa
aaagtttaattgNt Run BLAST on NCBI protein sequence of TCONS_00006363-protein >TCONS_00006363-protein ID=TCONS_00006363-protein|Name=TCONS_00006363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=665bp
QLNFFLVQMSPNTGKRILADRSYSETLMSMSICSDADGDITLMNSERLEP
RIESRHGTSTVGKANTRKGSSLSIDSRQWSSVTNKNAKHVVSAGSSVKFR
TPPNERHSAPIRPRERNIPSEKVIADKNVRIPRQQVSFSASTTKDRKKSQ
PATILKPGNQSPIILKNSKTKQRISFSANEIARGKKKPKNLRTSISASFT
KSASNQRSQQINPNETKSRETSSKVNASKSRNGNVSGKSTTLNPKLPKST
EPKSREPSSKSNASNSRQGNSKPITTRDEQSANQSRKSPALNPRLPKSTG
PKSREQSSKSADSNSRQGSSISYDSVSSSEIRDWYKKEGQRLHLRRTSGQ
FDSEVDFQDDADGWFLTDTEMTGRPESGFSAFSSFSEPETKAKNHYGYRG
NKAHMNEEILTVLDLIEQSSKTEEIEDENNRDQVIQHIHTSFFDDIYTSV
LEYLKVTDRLDEAGDVEFGDLIGENDNDFVILSENRDVLMGHFSSLERDP
SEQTIWDQIEVALTMRLIDACSVEKEDESESEMDEFELDSLKSTVREQVD
SASRDLLKXEFELDLLKSTVREQVDSASRDLLKEAELQAFDPVELENLKM
AIFLDLTAKLDSSKNKDKNSKLKKTSTEYRKQFYEKSSKKKKDKYLKNRK
SGASSNRHKRCVEGL Run BLAST on NCBI transcript from alignment at sc0000066:444246..446309 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006363 ID=TCONS_00006363|Name=TCONS_00006363|organism=Clytia hemisphaerica|type=transcript|length=2064bp|location=Sequence derived from alignment at sc0000066:444246..446309 (Clytia hemisphaerica)
aNcaattaaacttttttttggtacAAATGTCACCTAATACTGGAAAAAGG
ATACTGGCAGATAGATCTTACTCAGAAACTCTGATGTCAATGTCCATTTG
CAGTGACGCTGATGGCGATATAACTCTGATGAACTCAGAAAGACTTGAAC
CTCGGATTGAATCGAGACATGGTACGTCAACGGTTGGCAAAGCAAACACG
AGAAAGGGTAGTTCTCTCTCGATCGATTCCAGACAGTGGAGTTCAGTCAC
TAATAAAAATGCAAAACATGTGGTGAGTGCGGGAAGCTCTGTCAAGTTTC
GCACACCGCCCAATGAAAGACATTCGGCACCCATACGCCCCAGAGAACGA
AATATACCATCAGAGAAAGTGATTGCTGATAAAAACGTTCGAATACCGAG
ACAACAAGTGTCTTTTTCAGCTAGCACGACGAAAGATAGAAAAAAATCAC
AACCAGCTACAATACTGAAACCTGGAAATCAAAGCCCTATCATTTTAAAA
AACTCGAAGACAAAGcagagaatttctttttcagccAATGAAATTGCGAG
AGGAAAGAAAAAACCCAAAAATCTACGAACATCTATCTCAGCAAGCTTTA
CAAAGTCTGCTTCTAACCAAAGGTCACAGCAAATTAACCCGAACGAAACT
AAATCAAGAGAAACGAGCTCAAAGGTCAATGCCTCAAAGTCCAGAAATGG
AAATGTGAGCGGAAAGTCGACTACTTTGAATCCGAAGCTACCAAAATCAA
CCGAACCCAAATCGAGAGAACCGAGCTCTAAATCCAATGCCTCAAACTCA
AGGCAAGGAAACTCTAAGCCAATTACAACAAGGGACGAACAGTCCGCGAA
TCAAAGTCGAAAATCGCCGGCTTTGAATCCGAGGTTACCAAAATCAACCG
GACCCAAATCGAGAGAACAGAGCTCCAAATCTGCTGACTCAAACTCGAGG
CAAGGAAGCTCGATTTCATACGATTCTGTTTCGAGCTCGGAAATTCGAGA
TTGGTACAAGAAGGAAGGACAGAGGCTGCATTTACGCCGTACTTCTGGTC
AATTTGATTCAGAGGTTGATTTTCAGGATGATGCGGATGGTTGGTTTTTG
ACAGACACTGAAATGACGGGTCGACCAGAATCTGGATTTTCTGCTTTTTC
TAGTTTTTCAGAACCAGAAACAAAGGCAAAGAACCATTATGGGTATCGTG
GTAATAAAGCTCATATGAATGAAGAGATCTTGACCGTCTTAGATTTAATT
GAACAATCGAGCAAAACGGAAGAAATAGAAGATGAAAATAATCGAGACCA
AGTCATCCAGCATATTCACACATCCTTTTTTGATGATATTTACACCAGTG
TTTTAGAATATTTGAAAGTTACTGACAGGCTTGATGAAGCTGGCGACGTT
GAGTTTGGTGATCTCATTGGTGAAAATGATAACGATTTTGTGATTTTAAG
TGAGAACAGAGATGTTTTAATGGGACATTTTAGTTCTTTAGAGCGGGACC
CTTCTGAACAAACGATCTGGGACCAAATTGAGGTTGCTTTGACGATGCGA
TTAATTGACGCATGCTCAGTAGAAAAAGAAGATGAGTCTGAGTCAGAGAT
GGATGAATTTGAACTTGATTCGTTGAAATCTACAGTACGCGAACAAGTTG
ATTCCGCGTCGCGTGATCTGTTGAAAGANGAATTTGAACTTGATTTGTTG
AAATCTACAGTACGCGAACAAGTTGATTCCGCGTCGCGTGATCTGTTGAA
AGAGGCAGAGTTACAGGCATTTGATCCTGTCGAGTTGGAAAATTTGAAGA
TGGCGATTTTTCTCGATTTAACGGCAAAACTGGATTCTAGTAAGAATAAG
GATAAGAATTCGAAATTGAAAAAGACTTCAACAGAATACCGAaaacaatt
ttatgagaaatcatcaaagaagaagaaagacaaatatttgaaaaatcgtA
AATCAGGTGCAAGCTCTAACCGCCATAAGCGTTGCGTCGAAGGATTATAA
ATTGAATGTAATACCTGGCTGAAAGTTGAAGTGTATTTATTTGGTATTTA
TTGTAATGTTTCAT Coding sequence (CDS) from alignment at sc0000066:444246..446309 >TCONS_00006363 ID=TCONS_00006363|Name=TCONS_00006363|organism=Clytia hemisphaerica|type=CDS|length=1998bp|location=Sequence derived from alignment at sc0000066:444246..446309 (Clytia hemisphaerica)
caattaaacttttttttggtacAAATGTCACCTAATACTGGAAAAAGGAT
ACTGGCAGATAGATCTTACTCAGAAACTCTGATGTCAATGTCCATTTGCA
GTGACGCTGATGGCGATATAACTCTGATGAACTCAGAAAGACTTGAACCT
CGGATTGAATCGAGACATGGTACGTCAACGGTTGGCAAAGCAAACACGAG
AAAGGGTAGTTCTCTCTCGATCGATTCCAGACAGTGGAGTTCAGTCACTA
ATAAAAATGCAAAACATGTGGTGAGTGCGGGAAGCTCTGTCAAGTTTCGC
ACACCGCCCAATGAAAGACATTCGGCACCCATACGCCCCAGAGAACGAAA
TATACCATCAGAGAAAGTGATTGCTGATAAAAACGTTCGAATACCGAGAC
AACAAGTGTCTTTTTCAGCTAGCACGACGAAAGATAGAAAAAAATCACAA
CCAGCTACAATACTGAAACCTGGAAATCAAAGCCCTATCATTTTAAAAAA
CTCGAAGACAAAGcagagaatttctttttcagccAATGAAATTGCGAGAG
GAAAGAAAAAACCCAAAAATCTACGAACATCTATCTCAGCAAGCTTTACA
AAGTCTGCTTCTAACCAAAGGTCACAGCAAATTAACCCGAACGAAACTAA
ATCAAGAGAAACGAGCTCAAAGGTCAATGCCTCAAAGTCCAGAAATGGAA
ATGTGAGCGGAAAGTCGACTACTTTGAATCCGAAGCTACCAAAATCAACC
GAACCCAAATCGAGAGAACCGAGCTCTAAATCCAATGCCTCAAACTCAAG
GCAAGGAAACTCTAAGCCAATTACAACAAGGGACGAACAGTCCGCGAATC
AAAGTCGAAAATCGCCGGCTTTGAATCCGAGGTTACCAAAATCAACCGGA
CCCAAATCGAGAGAACAGAGCTCCAAATCTGCTGACTCAAACTCGAGGCA
AGGAAGCTCGATTTCATACGATTCTGTTTCGAGCTCGGAAATTCGAGATT
GGTACAAGAAGGAAGGACAGAGGCTGCATTTACGCCGTACTTCTGGTCAA
TTTGATTCAGAGGTTGATTTTCAGGATGATGCGGATGGTTGGTTTTTGAC
AGACACTGAAATGACGGGTCGACCAGAATCTGGATTTTCTGCTTTTTCTA
GTTTTTCAGAACCAGAAACAAAGGCAAAGAACCATTATGGGTATCGTGGT
AATAAAGCTCATATGAATGAAGAGATCTTGACCGTCTTAGATTTAATTGA
ACAATCGAGCAAAACGGAAGAAATAGAAGATGAAAATAATCGAGACCAAG
TCATCCAGCATATTCACACATCCTTTTTTGATGATATTTACACCAGTGTT
TTAGAATATTTGAAAGTTACTGACAGGCTTGATGAAGCTGGCGACGTTGA
GTTTGGTGATCTCATTGGTGAAAATGATAACGATTTTGTGATTTTAAGTG
AGAACAGAGATGTTTTAATGGGACATTTTAGTTCTTTAGAGCGGGACCCT
TCTGAACAAACGATCTGGGACCAAATTGAGGTTGCTTTGACGATGCGATT
AATTGACGCATGCTCAGTAGAAAAAGAAGATGAGTCTGAGTCAGAGATGG
ATGAATTTGAACTTGATTCGTTGAAATCTACAGTACGCGAACAAGTTGAT
TCCGCGTCGCGTGATCTGTTGAAAGANGAATTTGAACTTGATTTGTTGAA
ATCTACAGTACGCGAACAAGTTGATTCCGCGTCGCGTGATCTGTTGAAAG
AGGCAGAGTTACAGGCATTTGATCCTGTCGAGTTGGAAAATTTGAAGATG
GCGATTTTTCTCGATTTAACGGCAAAACTGGATTCTAGTAAGAATAAGGA
TAAGAATTCGAAATTGAAAAAGACTTCAACAGAATACCGAaaacaatttt
atgagaaatcatcaaagaagaagaaagacaaatatttgaaaaatcgtAAA
TCAGGTGCAAGCTCTAACCGCCATAAGCGTTGCGTCGAAGGATTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006363-exon-sc0000066-1491911889:444246..446309 | TCONS_00006363-exon-sc0000066-1491911889:444246..446309 | Clytia hemisphaerica | exon |
| TCONS_00006363-exon-sc0000066-1510915933:444246..446309 | TCONS_00006363-exon-sc0000066-1510915933:444246..446309 | Clytia hemisphaerica | exon |
| TCONS_00006363-exon-sc0000066-1575043694:444246..446309 | TCONS_00006363-exon-sc0000066-1575043694:444246..446309 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000066 | supercontig | sc0000066:444246..446309 . |
Blast
The following BLAST results are available for this feature:
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