TCONS_00006371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006371
Unique NameTCONS_00006371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006371 ID=TCONS_00006371|Name=TCONS_00006371|organism=Clytia hemisphaerica|type=transcript|length=737bp
ttttattttgaaagttaaACCAATATTTTACATCGTACTTTTGAATAGAT
CCTGGATTAGGCTCAGATGccacttttatttttcaaaatatgtttttgtA
TTTAGATTGTCCTGATCTGGACTTTTCCAGAACTGGAGGTGTCCAAAGAG
GTCAAATGTTGGTTATGATGTTTATTTTTAAACATATGTTTTCGTAGTTT
TTGACTTCTATTTCCTAGGATGGGGTTCGTCGTTGGAGGTGAAGATTGTT
TCCTGGGAGATTGTAAGGTCTTGTAAGGGTCTGAATATGTCGCAGTTTTT
TTTAGGTGAAATACCCAGTTTTTGGATTGATATAGAAGCTTTCCTAGTCC
TGGATGAAGTTGAATTCGGTTGATTTACACAAAATGTCGATCGTTTGGCC
CCTTTCTAAAGGGAGGAATATATCCTTTCAAAGAATCTCAAATGGGAGGG
CTTGTGAGGAGAGAAGGGAAAGTTTTCAAAGGGTTTTCAATTGTCTTTTT
TTAATAGTTTGCAACaaagcttgttttttttctcgcaGAAATCGTTTCGC
TTACTGACCAGGATGGAAATTTACTGAAAGGTTTCAAAGAGAATtcgata
agaacaatttcaggctgaaaatgccaaaaaaataagatatGCTGAGCCTC
AACAAATTTTTACTGGTTAAAAAGTGAAAGGAAGAAATGTGTAAAACCTG
TTACTTTATCTCTTGgtagaagatagttggacagaca
Run BLAST on NCBI

transcript from alignment at sc0000066:623869..624605

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006371 ID=TCONS_00006371|Name=TCONS_00006371|organism=Clytia hemisphaerica|type=transcript|length=737bp|location=Sequence derived from alignment at sc0000066:623869..624605 (Clytia hemisphaerica)
tgtctgtccaactatcttctacCAAGAGATAAAGTAACAGGTTTTACACA
TTTCTTCCTTTCACTTTTTAACCAGTAAAAATTTGTTGAGGCTCAGCata
tcttatttttttggcattttcagcctgaaattgttcttatcgaATTCTCT
TTGAAACCTTTCAGTAAATTTCCATCCTGGTCAGTAAGCGAAACGATTTC
tgcgagaaaaaaaacaagctttGTTGCAAACTATTAAAAAAAGACAATTG
AAAACCCTTTGAAAACTTTCCCTTCTCTCCTCACAAGCCCTCCCATTTGA
GATTCTTTGAAAGGATATATTCCTCCCTTTAGAAAGGGGCCAAACGATCG
ACATTTTGTGTAAATCAACCGAATTCAACTTCATCCAGGACTAGGAAAGC
TTCTATATCAATCCAAAAACTGGGTATTTCACCTAAAAAAAACTGCGACA
TATTCAGACCCTTACAAGACCTTACAATCTCCCAGGAAACAATCTTCACC
TCCAACGACGAACCCCATCCTAGGAAATAGAAGTCAAAAACTACGAAAAC
ATATGTTTAAAAATAAACATCATAACCAACATTTGACCTCTTTGGACACC
TCCAGTTCTGGAAAAGTCCAGATCAGGACAATCTAAATacaaaaacatat
tttgaaaaataaaagtggCATCTGAGCCTAATCCAGGATCTATTCAAAAG
TACGATGTAAAATATTGGTttaactttcaaaataaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003644XLOC_003644Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006371-exon-sc0000066-1491911889:623869..624605TCONS_00006371-exon-sc0000066-1491911889:623869..624605Clytia hemisphaericaexon
TCONS_00006371-exon-sc0000066-1510915933:623869..624605TCONS_00006371-exon-sc0000066-1510915933:623869..624605Clytia hemisphaericaexon
TCONS_00006371-exon-sc0000066-1575043694:623869..624605TCONS_00006371-exon-sc0000066-1575043694:623869..624605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:623869..624605 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.453066	0.143207	0.172774	0.161749	0	0.140271	0.0680752	0.179	0.223439	0.232043	0.114463	0.0409453	0	0.103401	0	0.0747435	0.129931	0.095064	0	0.0700422	0.144284	0.321924	0.460673	0.589971	0.298315	0.0759838
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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