TCONS_00045770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045770
Unique NameTCONS_00045770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045770 ID=TCONS_00045770|Name=TCONS_00045770|organism=Clytia hemisphaerica|type=transcript|length=519bp
CTCCGTTCTTCAAGTCATCCACCGTTAATTTCATAACATTTGCACCCTTT
TCACAttcaaaaatatgttctgtcTTTAGAACAAATTCCTCGCATCTTTC
GCATTTCTTTCCCACACTGGCCGTCCCTTTGAAATTATCGCTGAAGGGCA
GCATGTTAAGGCGAGCCTCCATAACACACTTGGCATCTCTTGCATTCATT
CCGGTGATATATTTCTTTCTCTCCCAGGTTGTTAAAAACCTCGATTTCGT
TTTATCGCATTCCTTGATCCTGCTGTTCATCCTTTCCGTTACCGCCTTTT
CAACCGTCCCCTTCCACTCGTTTCTGTTTTGTACTTTCGCTAGTTCTAAT
CCATCATCAATTTCAAATTCCGTGCAGATTTTTCCGACTTGGTGCCACCA
ACTGCTTTCCCTCTCTGCTTTTTCTTGTGCTTTTAAGATTTCTTTTGCCA
CTCTAGTGTCTTCCGAGTGCCATAGGTCGTGGTATAgcatcaattttttt
atcttaatttGAGCTATCA
Run BLAST on NCBI

protein sequence of TCONS_00045770-protein

>TCONS_00045770-protein ID=TCONS_00045770-protein|Name=TCONS_00045770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
IAQIKIKKLMLYHDLWHSEDTRVAKEILKAQEKAERESSWWHQVGKICTE
FEIDDGLELAKVQNRNEWKGTVEKAVTERMNSRIKECDKTKSRFLTTWER
KKYITGMNARDAKCVMEARLNMLPFSDNFKGTASVGKKCERCEEFVLKTE
HIFECEKGANVMKLTVDDLKNG
Run BLAST on NCBI

transcript from alignment at scaffold_100:74095..74613

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045770 ID=TCONS_00045770|Name=TCONS_00045770|organism=Clytia hemisphaerica|type=transcript|length=519bp|location=Sequence derived from alignment at scaffold_100:74095..74613 (Clytia hemisphaerica)
TGATAGCTCaaattaagataaaaaaattgatgcTATACCACGACCTATGG
CACTCGGAAGACACTAGAGTGGCAAAAGAAATCTTAAAAGCACAAGAAAA
AGCAGAGAGGGAAAGCAGTTGGTGGCACCAAGTCGGAAAAATCTGCACGG
AATTTGAAATTGATGATGGATTAGAACTAGCGAAAGTACAAAACAGAAAC
GAGTGGAAGGGGACGGTTGAAAAGGCGGTAACGGAAAGGATGAACAGCAG
GATCAAGGAATGCGATAAAACGAAATCGAGGTTTTTAACAACCTGGGAGA
GAAAGAAATATATCACCGGAATGAATGCAAGAGATGCCAAGTGTGTTATG
GAGGCTCGCCTTAACATGCTGCCCTTCAGCGATAATTTCAAAGGGACGGC
CAGTGTGGGAAAGAAATGCGAAAGATGCGAGGAATTTGTTCTAAAgacag
aacatatttttgaaTGTGAAAAGGGTGCAAATGTTATGAAATTAACGGTG
GATGACTTGAAGAACGGAG

Coding sequence (CDS) from alignment at scaffold_100:74095..74613

>TCONS_00045770 ID=TCONS_00045770|Name=TCONS_00045770|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_100:74095..74613 (Clytia hemisphaerica)
ATAGCTCaaattaagataaaaaaattgatgcTATACCACGACCTATGGCA
CTCGGAAGACACTAGAGTGGCAAAAGAAATCTTAAAAGCACAAGAAAAAG
CAGAGAGGGAAAGCAGTTGGTGGCACCAAGTCGGAAAAATCTGCACGGAA
TTTGAAATTGATGATGGATTAGAACTAGCGAAAGTACAAAACAGAAACGA
GTGGAAGGGGACGGTTGAAAAGGCGGTAACGGAAAGGATGAACAGCAGGA
TCAAGGAATGCGATAAAACGAAATCGAGGTTTTTAACAACCTGGGAGAGA
AAGAAATATATCACCGGAATGAATGCAAGAGATGCCAAGTGTGTTATGGA
GGCTCGCCTTAACATGCTGCCCTTCAGCGATAATTTCAAAGGGACGGCCA
GTGTGGGAAAGAAATGCGAAAGATGCGAGGAATTTGTTCTAAAgacagaa
catatttttgaaTGTGAAAAGGGTGCAAATGTTATGAAATTAACGGTGGA
TGACTTGAAGAACGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029248XLOC_029248Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045770-proteinTCONS_00045770-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045770-exon-scaffold_100-1491911889:74095..74613TCONS_00045770-exon-scaffold_100-1491911889:74095..74613Clytia hemisphaericaexon
TCONS_00045770-exon-scaffold_100-1510915933:74095..74613TCONS_00045770-exon-scaffold_100-1510915933:74095..74613Clytia hemisphaericaexon
TCONS_00045770-exon-scaffold_100-1575043694:74095..74613TCONS_00045770-exon-scaffold_100-1575043694:74095..74613Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:74095..74613 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.154335	0	0	0	0	0	0	0	0.0761133	0	0.0649853	0.0697392	0	0	0.243314	0.25461	0.110651	0	0	0.119298	0	0	0.156926	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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