TCONS_00045773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045773
Unique NameTCONS_00045773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045773 ID=TCONS_00045773|Name=TCONS_00045773|organism=Clytia hemisphaerica|type=transcript|length=302bp
TCCACATGgacctttttcagttcttcatttgCCTAGTGCTGACTGCTGTA
ATTTTGCTCCACCACCCTCCCCAGCATCTTTTGGGAAActtccttttttc
ctttttatgaTCAGCGTATATGGTTTTAGTGATGCCCTTTTTTGTCAATG
TTAGTTTATATTTCAGTATTTACTCATGTTTTTGTTATTAGTTTGTATTT
TTATGCTGTATTATTTTATATGTTTGTGATTTGTCCTTTTAAGCTTAGCT
Gtgtactcatttttattttattctagttcctgtacatattttgtctgtgc
cg
Run BLAST on NCBI

transcript from alignment at scaffold_100:107167..107468

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045773 ID=TCONS_00045773|Name=TCONS_00045773|organism=Clytia hemisphaerica|type=transcript|length=302bp|location=Sequence derived from alignment at scaffold_100:107167..107468 (Clytia hemisphaerica)
cggcacagacaaaatatgtacaggaactagaataaaataaaaatgagtac
aCAGCTAAGCTTAAAAGGACAAATCACAAACATATAAAATAATACAGCAT
AAAAATACAAACTAATAACAAAAACATGAGTAAATACTGAAATATAAACT
AACATTGACAAAAAAGGGCATCACTAAAACCATATACGCTGAtcataaaa
aggaaaaaaggaagTTTCCCAAAAGATGCTGGGGAGGGTGGTGGAGCAAA
ATTACAGCAGTCAGCACTAGGcaaatgaagaactgaaaaaggtcCATGTG
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029251XLOC_029251Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045773-exon-scaffold_100-1491911889:107167..107468TCONS_00045773-exon-scaffold_100-1491911889:107167..107468Clytia hemisphaericaexon
TCONS_00045773-exon-scaffold_100-1510915933:107167..107468TCONS_00045773-exon-scaffold_100-1510915933:107167..107468Clytia hemisphaericaexon
TCONS_00045773-exon-scaffold_100-1575043694:107167..107468TCONS_00045773-exon-scaffold_100-1575043694:107167..107468Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:107167..107468 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.10024	2.01614	1.68192	0	1.79247	0.528252	1.24132	0	1.73168	1.87936	0.38676	0.649132	0	0.441208	0.293201	0	0.42388	0.0569739	0	0.223827	0	0.858371	1.29623	1.56752	0.148502	0.422945	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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