TCONS_00045777 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045777
Unique NameTCONS_00045777
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045777 ID=TCONS_00045777|Name=TCONS_00045777|organism=Clytia hemisphaerica|type=transcript|length=329bp
GCGACAGTTGGGCAGTGaaagagcatccagctacggtgcgcaaagtcgtg
ggttcaatccccggcCAAAAGACTTAGTACTCGATGCCTCTCAGCTTTAT
GCTCAGCAATTGAGAGAAAGATCAAGGATGAATGGAGCAATCCAAGTAGA
AAATGTGTCGCCcacccctaccttcgggtagatagctatcgaaagaggag
cctttgggtcTCCACCGACTGTGGTCGAAGACTTACCTCCTAGCCTTTGT
CgtgatttgttttttatttcaggtCTAAGAATATATCTTCTGTTTTATGA
ATttcattctgaatttttttataaagctG
Run BLAST on NCBI

transcript from alignment at scaffold_100:306494..306822

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045777 ID=TCONS_00045777|Name=TCONS_00045777|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at scaffold_100:306494..306822 (Clytia hemisphaerica)
CagctttataaaaaaattcagaatgaaATTCATAAAACAGAAGATATATT
CTTAGacctgaaataaaaaacaaatcacGACAAAGGCTAGGAGGTAAGTC
TTCGACCACAGTCGGTGGAgacccaaaggctcctctttcgatagctatct
acccgaaggtaggggtgGGCGACACATTTTCTACTTGGATTGCTCCATTC
ATCCTTGATCTTTCTCTCAATTGCTGAGCATAAAGCTGAGAGGCATCGAG
TACTAAGTCTTTTGgccggggattgaacccacgactttgcgcaccgtagc
tggatgctctttCACTGCCCAACTGTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029255XLOC_029255Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045777-exon-scaffold_100-1491911889:306494..306822TCONS_00045777-exon-scaffold_100-1491911889:306494..306822Clytia hemisphaericaexon
TCONS_00045777-exon-scaffold_100-1510915933:306494..306822TCONS_00045777-exon-scaffold_100-1510915933:306494..306822Clytia hemisphaericaexon
TCONS_00045777-exon-scaffold_100-1575043694:306494..306822TCONS_00045777-exon-scaffold_100-1575043694:306494..306822Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:306494..306822 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.295637	0.288293	0.688328	1.70298	0	0.315045	0	0.355834	0	0	0.302078	0	0	0.410501	0	0.369949	0.665801	0.457722	4.58486	1.99661	0.291499	0	0	0	0.317413	0.570743	0.810755	0	0.328134	0.338136
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045777 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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