TCONS_00045778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045778
Unique NameTCONS_00045778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045778 ID=TCONS_00045778|Name=TCONS_00045778|organism=Clytia hemisphaerica|type=transcript|length=295bp
TGTGGCTTGCTAAACTGTCGTTAGTGTCCAGGCCTTCAGTTGAATGCCCG
TCTGTTGAACAAAGAGATTTGTAATATGATTTAATACGAGAATTCCGGGA
TAAATATATCATAGCGTTGACAGCAGAGTTGATTTGAGTCGGCAGGAAAC
AGTATATTAATGATATAGCGACACGCCTCATTGTTTCACGGTCGGTCGTG
TATAGAGCATAAAAACCGGCTGTTCCGGTTGCAACGGTACCCGGTATATA
ACAAATAATCAACGCTGCGGAAATCATACTTATAGTCCGGGAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_100:351548..351842

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045778 ID=TCONS_00045778|Name=TCONS_00045778|organism=Clytia hemisphaerica|type=transcript|length=295bp|location=Sequence derived from alignment at scaffold_100:351548..351842 (Clytia hemisphaerica)
CTCTCCCGGACTATAAGTATGATTTCCGCAGCGTTGATTATTTGTTATAT
ACCGGGTACCGTTGCAACCGGAACAGCCGGTTTTTATGCTCTATACACGA
CCGACCGTGAAACAATGAGGCGTGTCGCTATATCATTAATATACTGTTTC
CTGCCGACTCAAATCAACTCTGCTGTCAACGCTATGATATATTTATCCCG
GAATTCTCGTATTAAATCATATTACAAATCTCTTTGTTCAACAGACGGGC
ATTCAACTGAAGGCCTGGACACTAACGACAGTTTAGCAAGCCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029256XLOC_029256Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045778-exon-scaffold_100-1491911889:351548..351842TCONS_00045778-exon-scaffold_100-1491911889:351548..351842Clytia hemisphaericaexon
TCONS_00045778-exon-scaffold_100-1510915933:351548..351842TCONS_00045778-exon-scaffold_100-1510915933:351548..351842Clytia hemisphaericaexon
TCONS_00045778-exon-scaffold_100-1575043694:351548..351842TCONS_00045778-exon-scaffold_100-1575043694:351548..351842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:351548..351842 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.56686	4.35005	0	8.6203	0	2.36375	0	2.25752	0.930364	1.49525	2.22403	0.491446	0.685698	1.40091	2.42637	2.89319	0	0.590035	0	0	0	0.522816	0	0.250614	1.86366	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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