TCONS_00045783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045783
Unique NameTCONS_00045783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length736

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045783 ID=TCONS_00045783|Name=TCONS_00045783|organism=Clytia hemisphaerica|type=transcript|length=736bp
AATGGAAGGAAccccaaaattttgcaattccAGACCCTTGATCAGTTGAA
AGCTTAAATTAGAAATCTTGCAGCTAATCTCGACCCTCAAATTATTCGAA
ACGCTTTTACAGAATGGCTTAATTGTGTAAATAAGTGCTTTGGAAAAAGT
GGATAAACATTTCCTGATGACTAAACGACATTTATGTCTGTCTTACATCC
AGTATATGCTCggtcagggtcacttttttgcaaaatgttgAAGTTCACCA
TCGCTCGGCAAGGGTGGTTTCCCACCTGGGGCTCAAGTTCTAAGAAATTT
CTGAACGTCTTCTTATGTAAATTACGATCACAAGTCTCGTTTTATTTTCA
GAGGTTGCTCTGTCACCAAACGATcaccatgtttttattttcaagaagag
TGGAAACAAATGGGTTAAAGAAGCCACTCTGACTGAGGTAAGTATGAGTT
CTACTCTGGCTATTAGTATATTTTTTATGTGAATAAACCAAGCTTGAATG
ACGGATATAAAATTAGCAAATACTTTCTTTAGGCCATGGCCAGTGCCacc
aaaacgtttcacttttttttcaaaatgtccgtgACCAAGCTTTTAgaatt
gattttggtcaatttgagggtgctgattcggaatttgaatgttaccaagc
NCTtgtctagatcaaaagttatgggcgtttttgtgataaaaaagtgctat
aattttgcataaattatgcagattgtggggaaattc
Run BLAST on NCBI

transcript from alignment at scaffold_100:508978..509713

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045783 ID=TCONS_00045783|Name=TCONS_00045783|organism=Clytia hemisphaerica|type=transcript|length=736bp|location=Sequence derived from alignment at scaffold_100:508978..509713 (Clytia hemisphaerica)
gaatttccccacaatctgcataatttatgcaaaattatagcactttttta
tcacaaaaacgcccataacttttgatctagacaAGNgcttggtaacattc
aaattccgaatcagcaccctcaaattgaccaaaatcaattcTAAAAGCTT
GGTcacggacattttgaaaaaaaagtgaaacgttttggtGGCACTGGCCA
TGGCCTAAAGAAAGTATTTGCTAATTTTATATCCGTCATTCAAGCTTGGT
TTATTCACATAAAAAATATACTAATAGCCAGAGTAGAACTCATACTTACC
TCAGTCAGAGTGGCTTCTTTAACCCATTTGTTTCCActcttcttgaaaat
aaaaacatggtgATCGTTTGGTGACAGAGCAACCTCTGAAAATAAAACGA
GACTTGTGATCGTAATTTACATAAGAAGACGTTCAGAAATTTCTTAGAAC
TTGAGCCCCAGGTGGGAAACCACCCTTGCCGAGCGATGGTGAACTTcaac
attttgcaaaaaagtgaccctgaccGAGCATATACTGGATGTAAGACAGA
CATAAATGTCGTTTAGTCATCAGGAAATGTTTATCCACTTTTTCCAAAGC
ACTTATTTACACAATTAAGCCATTCTGTAAAAGCGTTTCGAATAATTTGA
GGGTCGAGATTAGCTGCAAGATTTCTAATTTAAGCTTTCAACTGATCAAG
GGTCTggaattgcaaaattttggggTTCCTTCCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029260XLOC_029260Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045783-exon-scaffold_100-1491911889:508978..509713TCONS_00045783-exon-scaffold_100-1491911889:508978..509713Clytia hemisphaericaexon
TCONS_00045783-exon-scaffold_100-1510915933:508978..509713TCONS_00045783-exon-scaffold_100-1510915933:508978..509713Clytia hemisphaericaexon
TCONS_00045783-exon-scaffold_100-1575043694:508978..509713TCONS_00045783-exon-scaffold_100-1575043694:508978..509713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:508978..509713 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
92.2844	91.2413	116.612	111.554	83.0673	69.7995	95.7251	110.846	103.983	110.322	73.0469	61.2367	53.4996	44.3448	56.9876	73.4279	80.3014	75.7739	47.5868	56.1529	65.4053	69.6116	44.4216	49.8892	64.3112	67.3381	67.0166	56.0483	79.7247	64.2411
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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