TCONS_00045785 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045785
Unique NameTCONS_00045785
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045785 ID=TCONS_00045785|Name=TCONS_00045785|organism=Clytia hemisphaerica|type=transcript|length=1128bp
TTCTGGTTCTTCCTGATGTTTTCGATGGGAAAAATAACGTAAACTAAGAA
TAAGAAAAATTGTATccataaaatattataaatataaGGCATCATGTTAG
CCTAATAAATGATCATCTCAGTAGAAAATTCAAAGGTTAGATATGCGCat
cttttatcaaatgaaaTGACTAGAGCAATACATCACGTGAAtccaaaata
caaaatatacaTACAATCTCCGTAATTCATTGTTCACAAAATCATCTGTA
ACTTATGTGTATACAGTGAGTCAAGGGGTACAGCTGCAGGTGACCCATAG
CGGGGGTGGTGATGTCTAATtttgaatctaaaaaaagttagtaccttGTT
CTACAAAATTTCTTGAATATTAGGGTTAGTACTCTGCGGCATTATTCTCC
CCTGAATAAGATACCGTTATAAATCACTTGAAATTCGTCTATTCTAGCAT
TAAGTTTTAGTATTTCACACAAGAGAATTGCCGTTTTTATATTCCTCTCT
ATCTCAGTTACTCAGAGTCTTAAATATTTATTATAAGACATCTTTAGTAG
AAATTCTCATAACAATACTATCTTCCAGAGTTCCCACGTTTGACTCATCA
TCCGTGATCTTATaaacatttttacatttttcttcgTTCACAAGACTCTC
TAAACAAGCCAATGCTTTTGGAGCTCCTTCCACCATATTGAAAATAGCCT
GAGCGCCAGTCTCACCCTCTTCCACTTTACGTAAACATAAACAGAGCACG
GCATTCTGGCTATCTATAGCTCCGAAGGTTTTTAAGGAGTCTGTTATACT
GTTCGATGGAGACAAATTATACAGAACTTCAGTATGTAGCGACCTCGTTT
TCATTGATTTGTTCGTTTTTGCATAAATAGCTTTGTTGCAAGCAAGTAAC
ACAGGGAATACTCCAGTCACATAATCCACGTTGATTAACGCGCAGTCAAT
CTCCTTTTTCATGACTTTCTGACGTAATGATGAAATattggtgacgtcat
caaataatccAAATGTCGCACTGTAATCTGGATATAAATCCAACTTGAAC
GTTTCAGTCAATCCCATCGTTcttcgattttttattttttattttgtaat
tttttttctaattcttcTAACACTGAAA
Run BLAST on NCBI

protein sequence of TCONS_00045785-protein

>TCONS_00045785-protein ID=TCONS_00045785-protein|Name=TCONS_00045785-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MGLTETFKLDLYPDYSATFGLFDDVTNISSLRQKVMKKEIDCALINVDYV
TGVFPVLLACNKAIYAKTNKSMKTRSLHTEVLYNLSPSNSITDSLKTFGA
IDSQNAVLCLCLRKVEEGETGAQAIFNMVEGAPKALACLESLVNEEKCKN
VYKITDDESNVGTLEDSIVMRISTKDVL
Run BLAST on NCBI

transcript from alignment at scaffold_100:512838..513965

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045785 ID=TCONS_00045785|Name=TCONS_00045785|organism=Clytia hemisphaerica|type=transcript|length=1128bp|location=Sequence derived from alignment at scaffold_100:512838..513965 (Clytia hemisphaerica)
TTTCAGTGTTAgaagaattagaaaaaaaattacaaaataaaaaataaaaa
atcgaagAACGATGGGATTGACTGAAACGTTCAAGTTGGATTTATATCCA
GATTACAGTGCGACATTTggattatttgatgacgtcaccaatATTTCATC
ATTACGTCAGAAAGTCATGAAAAAGGAGATTGACTGCGCGTTAATCAACG
TGGATTATGTGACTGGAGTATTCCCTGTGTTACTTGCTTGCAACAAAGCT
ATTTATGCAAAAACGAACAAATCAATGAAAACGAGGTCGCTACATACTGA
AGTTCTGTATAATTTGTCTCCATCGAACAGTATAACAGACTCCTTAAAAA
CCTTCGGAGCTATAGATAGCCAGAATGCCGTGCTCTGTTTATGTTTACGT
AAAGTGGAAGAGGGTGAGACTGGCGCTCAGGCTATTTTCAATATGGTGGA
AGGAGCTCCAAAAGCATTGGCTTGTTTAGAGAGTCTTGTGAAcgaagaaa
aatgtaaaaatgtttATAAGATCACGGATGATGAGTCAAACGTGGGAACT
CTGGAAGATAGTATTGTTATGAGAATTTCTACTAAAGATGTCTTATAATA
AATATTTAAGACTCTGAGTAACTGAGATAGAGAGGAATATAAAAACGGCA
ATTCTCTTGTGTGAAATACTAAAACTTAATGCTAGAATAGACGAATTTCA
AGTGATTTATAACGGTATCTTATTCAGGGGAGAATAATGCCGCAGAGTAC
TAACCCTAATATTCAAGAAATTTTGTAGAACaaggtactaacttttttta
gattcaaaATTAGACATCACCACCCCCGCTATGGGTCACCTGCAGCTGTA
CCCCTTGACTCACTGTATACACATAAGTTACAGATGATTTTGTGAACAAT
GAATTACGGAGATTGTAtgtatattttgtattttggaTTCACGTGATGTA
TTGCTCTAGTCAtttcatttgataaaagatGCGCATATCTAACCTTTGAA
TTTTCTACTGAGATGATCATTTATTAGGCTAACATGATGCCttatattta
taatattttatggATACAATTTTTCTTATTCTTAGTTTACGTTATTTTTC
CCATCGAAAACATCAGGAAGAACCAGAA

Coding sequence (CDS) from alignment at scaffold_100:512838..513965

>TCONS_00045785 ID=TCONS_00045785|Name=TCONS_00045785|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_100:512838..513965 (Clytia hemisphaerica)
ATGGGATTGACTGAAACGTTCAAGTTGGATTTATATCCAGATTACAGTGC
GACATTTggattatttgatgacgtcaccaatATTTCATCATTACGTCAGA
AAGTCATGAAAAAGGAGATTGACTGCGCGTTAATCAACGTGGATTATGTG
ACTGGAGTATTCCCTGTGTTACTTGCTTGCAACAAAGCTATTTATGCAAA
AACGAACAAATCAATGAAAACGAGGTCGCTACATACTGAAGTTCTGTATA
ATTTGTCTCCATCGAACAGTATAACAGACTCCTTAAAAACCTTCGGAGCT
ATAGATAGCCAGAATGCCGTGCTCTGTTTATGTTTACGTAAAGTGGAAGA
GGGTGAGACTGGCGCTCAGGCTATTTTCAATATGGTGGAAGGAGCTCCAA
AAGCATTGGCTTGTTTAGAGAGTCTTGTGAAcgaagaaaaatgtaaaaat
gtttATAAGATCACGGATGATGAGTCAAACGTGGGAACTCTGGAAGATAG
TATTGTTATGAGAATTTCTACTAAAGATGTCTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029262XLOC_029262Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045785-proteinTCONS_00045785-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045785-exon-scaffold_100-1491911889:512838..513965TCONS_00045785-exon-scaffold_100-1491911889:512838..513965Clytia hemisphaericaexon
TCONS_00045785-exon-scaffold_100-1510915933:512838..513965TCONS_00045785-exon-scaffold_100-1510915933:512838..513965Clytia hemisphaericaexon
TCONS_00045785-exon-scaffold_100-1575043694:512838..513965TCONS_00045785-exon-scaffold_100-1575043694:512838..513965Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:512838..513965 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
74.6615	78.7548	74.2637	70.9877	7.02819	5.0601	7.84193	6.64454	8.03527	5.96373	5.20186	5.68203	3.87689	4.66612	5.67755	6.65747	8.5782	8.9409	2.05188	2.36186	7.689	8.52038	38.5534	34.8495	3.15006	4.88288	6.82858	7.00518	13.7114	15.585
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013926CGI121/TPRKB
Blast
[Close]
BLAST of TCONS_00045785 vs. Swiss-Prot (Human)
Match: TPRKB (EKC/KEOPS complex subunit TPRKB OS=Homo sapiens GN=TPRKB PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.423e-35
Identity = 70/175 (40.00%), Postives = 110/175 (62.86%), Query Frame = -2 
Query:  534 TFKLDLYPDYSATFGLFDDVTNISSLRQKVMKKEIDCALINVDYVTGVFPVLLACNKAIYAKTNKSMKTRSLHTEVLYNLSPSNSITDSLKTFGAIDSQNAVLCLCLRKVEEGE--TGAQAIFNMVEGAPKALACLESLVNEEKCKNVYKITDDESNVGTLEDSIVMRISTKDVL 1052
            T +LDL+P+   T  LF DV N   LR+K M+  ID +LIN   +   F +L+A NKA++      MKTR+L TE+++NLSP+N+I+++LK FG   +  ++L +    +EEGE     + + + VEG   +L  L  ++N  + K +YK++  E ++GTL D+I+ R+STKDVL
Sbjct:    4 THQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVY---IEEGEKQINQEYLISQVEGHQVSLKNLPEIMNITEVKKIYKLSSQEESIGTLLDAIICRMSTKDVL 175
The following BLAST results are available for this feature:
BLAST of TCONS_00045785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPRKB1.423e-3540.00EKC/KEOPS complex subunit TPRKB OS=Homo sapiens GN... [more]
back to top