TCONS_00045790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045790
Unique NameTCONS_00045790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045790 ID=TCONS_00045790|Name=TCONS_00045790|organism=Clytia hemisphaerica|type=transcript|length=461bp
CAAGTGAGTACGCTGTGGCTGTACAAGAGCTTTCTTTCGAAACTTTAAAA
AGTATTCAAATGATAATGTATAGGTCGATACCAATGGCTGGTGTATCAAT
ATGTTTTCTTTGCTTTATCGTTTGTATGCCAGTATCGATGGCTTTTCGAC
ATACGATTACAACATGCTTTGAAGTCAGGAATGTCAGTATTATTCCATAT
GTAGATGCCCCAGGCTCCACATTGCAAGATTCTACTGTGCAGTTGAGATA
TTTGGTCAAGTCAATGCTGTATGAACCTTGTTTTATAGTTTGGGCTTTCT
CACCAGTACAAAATCGTTTGATTCGACTAAGCGAAGAGAACTACACTCAA
TTTATCGAGACCCAATTCCAAGCAGTTACGCAAACAGACGAAAATGATTT
GCTGGAGCTTTTGTTAAATATACGTCAtcacaataataataatatgcaAA
CTCTTTTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00045790-protein

>TCONS_00045790-protein ID=TCONS_00045790-protein|Name=TCONS_00045790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
SEYAVAVQELSFETLKSIQMIMYRSIPMAGVSICFLCFIVCMPVSMAFRH
TITTCFEVRNVSIIPYVDAPGSTLQDSTVQLRYLVKSMLYEPCFIVWAFS
PVQNRLIRLSEENYTQFIETQFQAVTQTDENDLLELLLNIRHHNNNNMQT
LFF
Run BLAST on NCBI

transcript from alignment at scaffold_100:725782..726242

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045790 ID=TCONS_00045790|Name=TCONS_00045790|organism=Clytia hemisphaerica|type=transcript|length=461bp|location=Sequence derived from alignment at scaffold_100:725782..726242 (Clytia hemisphaerica)
GAAAAAAAGAGTTtgcatattattattattgtgaTGACGTATATTTAACA
AAAGCTCCAGCAAATCATTTTCGTCTGTTTGCGTAACTGCTTGGAATTGG
GTCTCGATAAATTGAGTGTAGTTCTCTTCGCTTAGTCGAATCAAACGATT
TTGTACTGGTGAGAAAGCCCAAACTATAAAACAAGGTTCATACAGCATTG
ACTTGACCAAATATCTCAACTGCACAGTAGAATCTTGCAATGTGGAGCCT
GGGGCATCTACATATGGAATAATACTGACATTCCTGACTTCAAAGCATGT
TGTAATCGTATGTCGAAAAGCCATCGATACTGGCATACAAACGATAAAGC
AAAGAAAACATATTGATACACCAGCCATTGGTATCGACCTATACATTATC
ATTTGAATACTTTTTAAAGTTTCGAAAGAAAGCTCTTGTACAGCCACAGC
GTACTCACTTG

Coding sequence (CDS) from alignment at scaffold_100:725782..726242

>TCONS_00045790 ID=TCONS_00045790|Name=TCONS_00045790|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_100:725782..726242 (Clytia hemisphaerica)
GAAAAAAAGAGTTtgcatattattattattgtgaTGACGTATATTTAACA
AAAGCTCCAGCAAATCATTTTCGTCTGTTTGCGTAACTGCTTGGAATTGG
GTCTCGATAAATTGAGTGTAGTTCTCTTCGCTTAGTCGAATCAAACGATT
TTGTACTGGTGAGAAAGCCCAAACTATAAAACAAGGTTCATACAGCATTG
ACTTGACCAAATATCTCAACTGCACAGTAGAATCTTGCAATGTGGAGCCT
GGGGCATCTACATATGGAATAATACTGACATTCCTGACTTCAAAGCATGT
TGTAATCGTATGTCGAAAAGCCATCGATACTGGCATACAAACGATAAAGC
AAAGAAAACATATTGATACACCAGCCATTGGTATCGACCTATACATTATC
ATTTGAATACTTTTTAAAGTTTCGAAAGAAAGCTCTTGTACAGCCACAGC
GTACTCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029267XLOC_029267Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045790-exon-scaffold_100-1491911889:725782..726242TCONS_00045790-exon-scaffold_100-1491911889:725782..726242Clytia hemisphaericaexon
TCONS_00045790-exon-scaffold_100-1510915933:725782..726242TCONS_00045790-exon-scaffold_100-1510915933:725782..726242Clytia hemisphaericaexon
TCONS_00045790-exon-scaffold_100-1575043694:725782..726242TCONS_00045790-exon-scaffold_100-1575043694:725782..726242Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045790-proteinTCONS_00045790-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:725782..726242 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.79363	3.15232	1.38944	1.61259	0.954071	0	0.793135	1.45416	1.37164	7.45038	7.38361	2.19221	26.0022	7.97035	6.74328	12.678	2.81175	8.25244	12.4571	13.1875	0.666011	1.06239	2.50259	2.19607	0.954871	0.269803	4.81806	2.80014	6.05178	10.0396
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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