TCONS_00045794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045794
Unique NameTCONS_00045794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045794 ID=TCONS_00045794|Name=TCONS_00045794|organism=Clytia hemisphaerica|type=transcript|length=220bp
ATTGAAACGATTGAGAAGTTTACCTTAAATCGGGTTGTTTTAAATGTTGT
TGGTATAAATATTCATTTAGTGTGTTCCATAGTTTGTTTTGAAGTGATTG
TACACAtttgattggtcaaaaagaTGGTGTGACACATTTTTGTTATTTGT
AAGTTTCTCAGGCCATTTGAAATATGCTATCTAAAACTGAATATTCTACT
CAAAGAGTACCGTTAATAGC
Run BLAST on NCBI

transcript from alignment at scaffold_100:746708..746927

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045794 ID=TCONS_00045794|Name=TCONS_00045794|organism=Clytia hemisphaerica|type=transcript|length=220bp|location=Sequence derived from alignment at scaffold_100:746708..746927 (Clytia hemisphaerica)
GCTATTAACGGTACTCTTTGAGTAGAATATTCAGTTTTAGATAGCATATT
TCAAATGGCCTGAGAAACTTACAAATAACAAAAATGTGTCACACCAtctt
tttgaccaatcaaaTGTGTACAATCACTTCAAAACAAACTATGGAACACA
CTAAATGAATATTTATACCAACAACATTTAAAACAACCCGATTTAAGGTA
AACTTCTCAATCGTTTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029271XLOC_029271Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045794-exon-scaffold_100-1491911889:746708..746927TCONS_00045794-exon-scaffold_100-1491911889:746708..746927Clytia hemisphaericaexon
TCONS_00045794-exon-scaffold_100-1510915933:746708..746927TCONS_00045794-exon-scaffold_100-1510915933:746708..746927Clytia hemisphaericaexon
TCONS_00045794-exon-scaffold_100-1575043694:746708..746927TCONS_00045794-exon-scaffold_100-1575043694:746708..746927Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_100supercontigscaffold_100:746708..746927 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	15.015	0	11.1337	16.3793	3.12751	3.87393	0	0.823921	0.822776	2.56338	0	0.753872	0	0.951896	0	4.12846	1.19613	3.50057	2.83694	1.53966	1.32825	1.18543	8.48175	5.43117	1.37312	2.79798
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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