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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045800 ID=TCONS_00045800|Name=TCONS_00045800|organism=Clytia hemisphaerica|type=transcript|length=3820bpRun BLAST on NCBI protein sequence of TCONS_00045800-protein >TCONS_00045800-protein ID=TCONS_00045800-protein|Name=TCONS_00045800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1042bp MLNRCNFSQPGTTNNKNNIKTSKIMECRICCCLVLVAIMSLNFQYSDSIARun BLAST on NCBI transcript from alignment at scaffold_101:61196..78041+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045800 ID=TCONS_00045800|Name=TCONS_00045800|organism=Clytia hemisphaerica|type=transcript|length=16846bp|location=Sequence derived from alignment at scaffold_101:61196..78041+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_101:61196..78041+ >TCONS_00045800 ID=TCONS_00045800|Name=TCONS_00045800|organism=Clytia hemisphaerica|type=CDS|length=53193bp|location=Sequence derived from alignment at scaffold_101:61196..78041+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00045800 vs. Swiss-Prot (Human)
Match: HYOU1 (Hypoxia up-regulated protein 1 OS=Homo sapiens GN=HYOU1 PE=1 SV=1) HSP 1 Score: 559.296 bits (1440), Expect = 6.890e-179 Identity = 288/547 (52.65%), Postives = 382/547 (69.84%), Query Frame = 2
Query: 236 SDSIAVMSVDLGSEWLKVAIVKPGVPMEIALNKESRRKTPFAVSMKGIEREFGDPAMTVAVKQPPKSYIYLMNLLGKKFDSPAVETYRKRFPHYTLLKDEKRGTVLFQGEDDQKHSVEELVAMMLNNTRHTAENFASHPMKDVVLTVPVFFNQAERRALINAANMTKLNVLQLMNDNTAVALNYGIFRAATFNSTVKNVMFFDMGSSHTTVTIVGYGTTKVKDRGFVETVPQLVIKGVGFDTTLGGLEMDMRLREVLVXX-XXXXXXXXXXDITKNPRAMAKLLKESRRVRQVLSANTDHKAQIENVFEEKDFRMKVSRAQLEEIYADLFARVEKPIKMALDGAAMKMEDIETVILMGGGTRIPKVQEILLKTTQKSELGKNINTDEAAALGAVYKAADLTAGFKVKRFLVKDLNLFPIDIKFERSSQTDGETKS-KTITRNLYHRLNPLPQKKVMTFNRKPNDFHFNSSYGDLTFLNDELKGTLDLDTLINYRLSGVEEAHKKNEKLAQKGVKAYFELDESGLLNLEKVEAHFEKSPEQAEEDEQS 1870
SD++AVMSVDLGSE +KVAIVKPGVPMEI LNKESRRKTP V++K ER FGD A ++A+K P + Y +LLGK+ D+P V Y+ RFP + L D +R TV FQ + S EE++ M+LN +R AE+FA P+KD V+TVPVFFNQAERRA++ AA M L VLQL+NDNTA AL+YG+FR N+T +N+MF+DMGS T TIV Y K K+ G PQL I+GVGFD TLGGLEM++RLRE L +++ + KD+ +NPRAMAKLL+E+ R++ VLSAN DH AQIE + ++ DF+ KV+R + EE+ ADLF RV P++ AL A M +++IE VIL+GG TR+P+VQE+LLK K ELGKNIN DEAAA+GAVY+AA L+ FKVK F+V+D ++PI ++F R + + S K R L+ R+ P PQ+KV+TFNR +DF+F+ +YGDL FL E L +L GV ++ KK KG+KA+F LDESG+L+L++VE+ FE E + E+E +
Sbjct: 30 SDTLAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKNPKATLRYFQHLLGKQADNPHVALYQARFPEHELTFDPQRQTVHFQISSQLQFSPEEVLGMVLNYSRSLAEDFAEQPIKDAVITVPVFFNQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINTTAQNIMFYDMGSGSTVCTIVTYQMVKTKEAGM---QPQLQIRGVGFDRTLGGLEMELRLRERLAGLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRVEFEELCADLFERVPGPVQQALQSAEMSLDEIEQVILVGGATRVPRVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVVYPILVEFTREVEEEPGIHSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGDSFKKYPDYESKGIKAHFNLDESGVLSLDRVESVFETLVEDSAEEEST 573 HSP 2 Score: 122.865 bits (307), Expect = 3.904e-28 Identity = 83/209 (39.71%), Postives = 129/209 (61.72%), Query Frame = 2
Query: 2246 LNFMDLPSVEKEVFQASVKKLNDLQARDLAKFATEKARNELESHVFEFKDKLTNEEVEALSTEEERKKLTEALNQASDWLDEEGFDADEATFXXXXXXXXXXXXXXXXXXXXTEERPKAIASMLQSLNLTSGFLVSMKKLPDAKEIYAEKDFTDIEKVYTETKNWFTTNWKKHNESDPTKKPVFLSKDILYEQNKLDREMVYLINKAKY 2872
L +DLP + ++ SV+KL DL RDL K EKA N LE+ +FE +DKL E + +STEE+R++++ L+ AS WL++EG A K+KL EL++L + L R++E ++ P+ ++++ LN +S FL + +P+ +I+ E + T +EKV ET W + + T+KPV LSKDI + LDRE+ YL+NKAK+
Sbjct: 703 LVVLDLPDLPEDKLAQSVQKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREEISGKLSAASTWLEDEGVGATTVMLKEKLAELRKLCQGLFFRVEERKKWPERLSALDNLLNHSSMFLKGARLIPEMDQIFTEVEMTTLEKVINETWAWKNATLAEQAKLPATEKPVLLSKDIEAKMMALDREVQYLLNKAKF 911 The following BLAST results are available for this feature:
BLAST of TCONS_00045800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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